BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479128
Length=2966
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16630.1 | Symbols: ATKINESIN-13A, KINESIN-13A | P-loop cont... 4405 0.0
> AT3G16630.1 | Symbols: ATKINESIN-13A, KINESIN-13A | P-loop containing
nucleoside triphosphate hydrolases superfamily protein
| chr3:5662384-5667803 REVERSE LENGTH=3033
Length=3033
Score = 4405 bits (2385), Expect = 0.0
Identities = 2834/3036 (93%), Gaps = 90/3036 (3%)
Strand=Plus/Plus
Query 1 AAAACTTCTTCAACGCCCCTCTGTTTCTCATCTCTCTGCGCCTAACGTCGCTTACGGAAG 60
||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 1 AAATCTTCTTCAACGCCCCTCTCTTTCTCATCTCTCTGCGCCTAACGTCGCTTAC-G--G 57
Query 61 AAGAAGACGAAATTTTTGAACAGAAG--CTCTCTCTC-A-------A----TC--TC-C- 102
|||||||||||| ||||||||||||| ||||||||| | | || || |
Sbjct 58 AAGAAGACGAAAATTTTGAACAGAAGCTCTCTCTCTCTATCTCTCTATCTCTCTATCTCT 117
Query 103 AACGCTAAACGATGTGCGTCTCTTAGGGCTCTTCACTCGTCGGATCTGATTGTATATTCT 162
||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| |
Sbjct 118 AACGCTATTCGATGTGCGTAAATTAGGGTTCTTCACTCGTCGGATCTGATTGTATATTGT 177
Query 163 -TAGATCACAGATCTC---T-T-TTTTC-AACACCGTTGCGTGTCTTCGTTTCCTTCTCT 215
| ||| |||||||| | | || || |||||||||||||||||||||||||||||
Sbjct 178 GAAAATCTCAGATCTCAGATCTCTTATCTAACACCGTTGCGTGTCTTCGTTTCCTTCT-G 236
Query 216 ATTTCGAAAGAAGTGAAG-AAAGTTGGGAGCTGTACATTTCCGCTTTCATGTTCTGTGTT 274
|||| ||| || |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 237 ATTTTGAAGGAGGTGAAGCAAAGTCGGGAGCTGTACATTTCCGCTTTCATGTTCTGTGTT 296
Query 275 GAATCCGAATTCTCTCCAC---A--------CACAGATCTCCCAAGTTGGCTCCTCAAAG 323
||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 297 GAATCCGAATTCTCTCCACATTAGTTGTTTTTACAGATCTCCGAAGTTGGCTCCTCAAAG 356
Query 324 AAGATCACAGCGCCACATGGGCGGCCAAATGCAGCAAAGCAATGCTGCGGCTGCGACGGC 383
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 357 AAGATCACAGCGCCTCATGGGCGGCCAAATGCAGCAAAACAATGCTGCGGCTGCGACGGC 416
Query 384 GCTATACGATGGGGCTTTACCCTCAAATGACGCAGGAGATGCAGTCATGGCACGGTGGCT 443
||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 417 GCTTTACGATGGGGCTTTACCCACTAATGACGCAGGAGATGCAGTCATGGCACGGTGGCT 476
Query 444 TCAATCCGCTGGATTGCAGCATTTGGGGTCTCCGGTTGCTTCTACAGGCAATGATCAGCG 503
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 477 TCAATCCGCTGGTTTGCAGCATTTGGCGTCTCCTGTTGCTTCTACAGGCAATGATCAGCG 536
Query 504 TCATCTCCCAAACCTTCTCATGCAGGGTTATGGAGCACAGACCGCTGAAGAGAAACAAAG 563
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 537 TCACCTCCCAAACCTTCTCATGCAGGGTTATGGAGCTCAGACTGCTGAAGAGAAACAAAG 596
Query 564 ACTGTTCAAACTAATGAGAAATCTCAATTTTAATGGGGAGTCGACTTCTGAATCATATAC 623
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ACTGTTCCAACTAATGAGAAATCTCAATTTTAATGGGGAGTCGACTTCTGAATCATATAC 656
Query 624 ACCAACTGCTCAGACATCAGCAGCTATGCCCTCTTCGGAAGGAtttttttCACCTGACTT 683
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 ACCAACTGCTCACACATCAGCAGCTATGCCCTCTTCGGAAGGATTTTTTTCACCTGAGTT 716
Query 684 CAGAGGTGATTTTGGAGCTGGATTATTGGATCTTCATGCAATGGATGATACAGAGCTTCT 743
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAGAGGTGATTTTGGAGCAGGATTATTGGATCTTCATGCAATGGATGATACAGAGCTTCT 776
Query 744 ATCTGAGCATGTGATTACCGAACCGTTTGAGCCGTCACCTTTCATGCCTAGTGTAAATAA 803
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 777 ATCTGAGCATGTGATTACCGAACCCTTTGAGCCGTCACCTTTCATGCCTAGTGTAAATAA 836
Query 804 AGAATTTGAAGAAGACTATAATTTGCCAGCTAATCATCAACAACGTCAACAGACAGAAGC 863
||||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||||
Sbjct 837 AGAATTTGAAGAAGACTATAATTTGGCAGCTAATCGTCAACAGCGGCAACAGACAGAAGC 896
Query 864 TGAA-CTTGTGGGTTTATTGCCTAAGAGTGAAAAAGAAAATAACAGTGTAGCCAAGATTA 922
|||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 897 TGAACCTT-TGGGTTTATTGCCTAAAAGTGATAAAGAAAATAACAGTGTAGCCAAGATTA 955
Query 923 AAGTAGTGGTAAGGAAAAGACCCCTAAACAAGAAAGAAACAGCTAGAAAGGAGGAGGATG 982
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 956 AAGTAGTGGTAAGGAAAAGACCCCTAAACAAGAAAGAAACAGCTAAAAAGGAGGAGGATG 1015
Query 983 TCGTGACGGTATCTGATAATTCTTTGACTGTCCATGAGCCCAAAGTGAAGGTGGATTTGA 1042
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1016 TCGTGACGGTATCTGATAATTCTTTGACTGTCCATGAGCCCAGAGTGAAGGTTGATTTGA 1075
Query 1043 CTGCTTATGTGGAAAAGCATGAGTTCTGCTTTGATGCTGTTCTAGATGAGGATGTCTCAA 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1076 CTGCTTATGTGGAAAAGCATGAGTTCTGCTTTGATGCTGTTCTAGATGAGGATGTTTCAA 1135
Query 1103 ATGACGAGGTGTATCGGGCCACAATTGAGCCGATAATTCCAATTATTTTCCAGAGAACTA 1162
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1136 ATGACGAGGTGTATCGGGCCACAATTGAGCCAATAATTCCCATTATTTTCCAGAGAACTA 1195
Query 1163 AAGCTACATGTTTTGCATATGGTCAAACAGGTAGTGGTAAGACATTCACAATGAAACCAC 1222
|||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1196 AAGCTACATGCTTTGCATATGGCCAAACAGGTAGTGGTAAGACATTTACAATGAAACCAT 1255
Query 1223 TACCCATACGAGCAGTTGAAGATCTTATGAGGTTGTTGCGTCAACCAGTATACAGCAATC 1282
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TACCTATACGAGCAGTTGAAGATCTTATGAGGTTGTTGCGTCAACCAGTATACAGCAATC 1315
Query 1283 AGAGGTTTAAATTGTGGCTCAGCTATTTTGAAATATATGGTGGAAAGCTGTTCGATCTTC 1342
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1316 AGAGGTTTAAATTGTGGCTCAGCTATTTTGAGATATATGGTGGAAAGCTGTTCGATCTTC 1375
Query 1343 TCAGTGAGAGAAAGAAACTTTGCATGAGAGAAGATGGTAGACAGCAAGTTTGCATTGTTG 1402
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1376 TCAGTGAGAGAAAGAAACTTTGCATGCGAGAAGATGGTAGACAGCAAGTTTGCATTGTTG 1435
Query 1403 GCCTGCAAGAATATGAAGTTTCAGATGTACAAATTGTAAAGGATTTTATCGAAAAAGGAA 1462
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1436 GCCTGCAAGAATATGAAGTTTCAGATGTACAAATTGTAAAGGATTTTATCGAGAAAGGAA 1495
Query 1463 ATGCTGAAAGGAGCACAGGGTCAACTGGAGCAAATGAGGAATCTTCTAGATCACATGCTA 1522
|||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 1496 ATGCCGAAAGGAGCACAGGTTCAACTGGAGCAAATGAGGAATCTTCTAGATCGCATGCCA 1555
Query 1523 TCCTACAGCTTGTTGTAAAAAAGCATGTTGAGGTAAAAGACACTAGACGGAGGAATAATG 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TCCTACAGCTTGTTGTAAAAAAGCATGTTGAGGTAAAAGACACTAGACGGAGGAATAATG 1615
Query 1583 ATGGTAATGAATTGCCAGGGAAAGTTGTGGGAAAGATTTCTTTCATTGACCTTGCTGGCA 1642
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 ATAGTAATGAATTGCCTGGGAAAGTTGTGGGAAAGATTTCTTTCATTGACCTTGCTGGCA 1675
Query 1643 GTGAAAGAGGTGCAGACACTACAGACAATGACCGTCAGACAAGGATTGAAGGCGCAGAAA 1702
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1676 GTGAAAGAGGTGCAGACACCACAGACAATGATCGCCAGACAAGGATTGAAGGCGCAGAAA 1735
Query 1703 TCAACAAGAGTCTCTTGGCTCTTAAGGAATGTATACGTGCACTGGACAATGACCAGCTAC 1762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TCAACAAGAGTCTCTTGGCTCTTAAGGAATGTATACGTGCACTGGACAATGACCAGCTAC 1795
Query 1763 ATATACCATTTCGTGGAAGCAAACTAACGGAAGTGCTCCGTGACTCATTTGTTGGAAACT 1822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 ATATACCATTTCGTGGAAGCAAACTAACGGAAGTGCTCCGTGACTCATTTGTTGGAAACT 1855
Query 1823 CAAGAACGGTGATGATTTCCTGCATCTCTCCAAATGCAGGATCGTGTGAACATACCCTCA 1882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 CAAGAACGGTGATGATTTCCTGCATCTCTCCAAATGCAGGATCGTGTGAACATACCCTCA 1915
Query 1883 ATACTCTAAGATATGCTGATCGAGTCAAAAGTCTATCTAAAAGTGGAAATAGCAAGAAAG 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 ATACTCTAAGATATGCTGATCGAGTCAAAAGTCTATCTAAAAGTGGAAATAGCAAGAAAG 1975
Query 1943 ATCAAACTGCCAATTCAATGCCTCCGGTTAATAAGGATGCTTTGTTAGGCCCAAATGATG 2002
|||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1976 ATCAAACTGCGAATTCAATGCCTCCGGTTAATAAGGATCCTTTGTTGGGCCCAAATGATG 2035
Query 2003 TAGAAGATGTCTTTGAGCCTCCACAGGAAGTGAATGTAC-AGGAAACCAGGAGGAGGGTG 2061
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2036 TAGAAGATGTCTTTGAGCCTCCACAGGAAGTGAATGTACCAG-AAACCAGGAGGAGGGTG 2094
Query 2062 GTCGAGAAGGACAGCAACA-CTACTACGTCAGGTATTGAGTTTAGACAGCCTACAAATTA 2120
||||||||||||||||||| | | |||||| |||||||| || |||||||||||||||||
Sbjct 2095 GTCGAGAAGGACAGCAACAGC-AGTACGTCGGGTATTGACTTCAGACAGCCTACAAATTA 2153
Query 2121 TCGAGAGGAAAGTGGAATCCCATCATTCTCGATGGACAAGGGAAGATCAGAGATGAATAC 2180
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
Sbjct 2154 TCGAGAGGAAAGTGGAATCCCATCATTCTCAATGGACAAGGGAAGATCAGAGCCGAACAG 2213
Query 2181 TTCTTTTGGTGGCTCCACTAGTCAGAGGAACCACATGTCTTCATATCCCCAAGAAACTTC 2240
|||||||| |||||||||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct 2214 TTCTTTTGCTGGCTCCACTAGTCAGAGAAACAACATTTCTTCATATCCCCAAGAAACTTC 2273
Query 2241 GGGCCGTGAAGAGAAAGTGAAGAAAGTGTCACCACCTCGTGGGAAAGGGTTGCGGGAAGA 2300
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2274 AGACCGTGAAGAGAAAGTAAAGAAAGTGTCACCACCTCGTGGGAAAGGGTTGCGGGAAGA 2333
Query 2301 AAAGCCAGACAGACCACAAAACTGGTCTAAAAGAGATGTCAGTTCATCGGATATCCCTAC 2360
||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2334 AAAACCAGACAGACCACAAAATTGGTCTAAAAGAGATGTCAGTTCGTCGGATATCCCTAC 2393
Query 2361 CTTGACAAATTTTAGACAGAACACAAGTGAAACTGCTTCAAGGCAAT------C---T-- 2409
|||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 2394 CTTGACAAATTTTAGACAGAACGCAAGTGAAACTGCTTCAAGGCAATATGAAACCGCTTC 2453
Query 2410 --G--AA-A-----CCGACCCTTCGCTTGATGAAAACCTCGATGCACTGCTTGAGGAAGA 2459
| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 AAGGCAATATGAAACCGACCCTTCGCTTGATGAAAACCTCGATGCACTGCTTGAGGAAGA 2513
Query 2460 AGAAGCTCTGATTGCAGCACACAGAAAAGAAATTGAGGATACAATGGAGATTGTTCGCGA 2519
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2514 AGAAGCTCTGATTGCAGCGCACAGAAAAGAAATTGAGGATACAATGGAGATTGTTCGCGA 2573
Query 2520 GGAAATGAAACTTCTAGCGGAGGTGGACCAACCGGGAAGCATGATAGAAAACTATGTGAC 2579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574 GGAAATGAAACTTCTAGCGGAGGTGGACCAACCGGGAAGCATGATAGAAAACTATGTGAC 2633
Query 2580 GCAACTAAGCTTTGTGCTGTCCCGGAAAGCAGCAGGGCTAGTCAGTCTTCAAGCGAGGCT 2639
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2634 GCAACTGAGCTTTGTGTTGTCCCGGAAAGCAGCAGGGCTAGTCAGTCTTCAAGCCAGGCT 2693
Query 2640 TGCTCGGTTCCAACATCGTCTTAAGGAACAAGAAATACTGAGCCGTAAGAGAGTTCCTCG 2699
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2694 TGCTCGGTTCCAACACCGTCTCAAGGAACAAGAAATACTGAGCCGTAAGAGAGTTCCTCG 2753
Query 2700 ATAGTTGGTAGAAGAAGGAAA-CCAAAAGTGTGTTGTTGTT-AAGTGTGTGAAAGGTTC- 2756
|||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||
Sbjct 2754 GTAGTTGGTAGAAGAAGGAAAACCAAAAGTGTGGTGTTGTTTAAGTGTG--AAAGGTTGG 2811
Query 2757 TTGGGACAAGGTGATATCTTCTT-TA-AT-ACAAAGAAT--CAGAAATGTCCTTG-TGTT 2810
||||| |||| ||||||| || || ||||||||| ||||||||||||| ||||
Sbjct 2812 TTGGG------TGATCTCTTCTTATATATGACAAAGAATGACAGAAATGTCCTTCATGTT 2865
Query 2811 TGTGAAGTTGTGCATTTATTTCCTTTTAtttttttAATCTTAAATCATAAAATTATACCT 2870
|||||| ||| |||||| ||||||||||||||| |||||| | | ||||| ||||||||
Sbjct 2866 TGTGAATTTGGGCATTTCTTTCCTTTTATTTTTG-AATCTTTATT-ATAAAGTTATACCT 2923
Query 2871 TTTGTGTTTCCTATTTTTCTCTTCTCTTCTATCCTCCCAAAAAAGGTGGATACTGTCAAT 2930
|||||||||| ||||||||||||||| |||||||||||| ||| | ||||||||||||||
Sbjct 2924 TTTGTGTTTCTTATTTTTCTCTTCTCCTCTATCCTCCCAGAAA-GCTGGATACTGTCAAT 2982
Query 2931 GTGAATCAAACTCTATTCTATTAATCAACTGAAAAA 2966
|||||||||||||| || ||| ||||||||||||||
Sbjct 2983 GTGAATCAAACTCT-TT-TATCAATCAACTGAAAAA 3016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147440645477
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5