BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479130
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16640.1 | Symbols: TCTP | translationally controlled tumor ... 1061 0.0
> AT3G16640.1 | Symbols: TCTP | translationally controlled tumor
protein | chr3:5669373-5670842 REVERSE LENGTH=956
Length=956
Score = 1061 bits (574), Expect = 0.0
Identities = 741/817 (91%), Gaps = 29/817 (4%)
Strand=Plus/Plus
Query 1 CTCGTCGCTGCGTCTCTCTCCCGCAACCTTCAATTTTCGTTAATTCACATCCATCGgaga 60
||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |
Sbjct 31 CTCGTCGCTGCGTCTCTCTCCCGCAACCTTCGATTTTCGTTTATTCGCATCCATC---G- 86
Query 61 gagagagaTAAATAAATCAAATAAGCGACCATGTTGGTGTA-CACAGATCTTCTCACCGG 119
|||||||| ||| |||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 87 GAGAGAGA-AAA-CAATC-AATAAGCGACCATGTTGGTGTACCA-AGATCTTCTCACCGG 142
Query 120 TGATGAGCTTCTGTCTGACTCTTTCCCTTACAAGGAGATTGAGAATGGAATTCTTTGGGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 143 TGATGAGCTTCTGTCTGACTCTTTCCCTTACAAGGAGATTGAGAATGGAATCCTCTGGGA 202
Query 180 AGTAGAAGGAAAGTGGGTTACTCTGGGAGCTGTAGATGTTAACATTGGTGCCAATCCATC 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 203 AGTAGAAGGAAAGTGGGTTACTGTGGGAGCTGTAGATGTTAACATTGGTGCCAATCCATC 262
Query 240 TGCTGAAGAAGGTGGTGAGGATGAGGGTGTTGATGACTCTGCTCAAAAGGTTGTTGACAT 299
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 263 TGCTGAAGAAGGTGGTGAGGATGAAGGTGTTGATGACTCTACTCAAAAGGTTGTTGACAT 322
Query 300 TGTCGACACCTTCAGACTTCAGGAGCAACCAACTTATGACAAGAAGGGATTCGTCGCTTA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 323 TGTCGACACCTTCAGACTTCAGGAGCAACCAACTTATGACAAGAAGGGATTCATCGCTTA 382
Query 360 TATTAAGAAATACATCAAGTCGTT-GACACCCAAGCTCAACGAAGAACAGCAGGAA-TCC 417
|||||||||||||| ||| | || |||||||||||||| ||||||| | || | ||
Sbjct 383 CATTAAGAAATACATTAAG-CTTTTGACACCCAAGCTCAGCGAAGAAGATCAAGCTGTC- 440
Query 418 TTCAAGAAGGGTATTGAGGGAGCTACCAAGTACCTT-CTCCCCAAGCTCAAAGACCTCCA 476
||||||||||||||||||||||||||||||| || ||||||| ||||| ||| ||||
Sbjct 441 TTCAAGAAGGGTATTGAGGGAGCTACCAAGTTT-TTGCTCCCCAGGCTCAGTGACTTCCA 499
Query 477 ATTCTTTGTTGGGGAGTCAATGCACGATGACAGCTCTTTGGTCTTTGCCTACTACAAGGA 536
|||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||
Sbjct 500 ATTCTTTGTTGGGGAGGGTATGCATGATGACAGCACTTTGGTCTTTGCTTACTACAAGGA 559
Query 537 TGGTGCAACTAACCCAACATTTTTGTACTTCGCACATGGTTTGAAGGAGGTCAAGTGCTG 596
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 560 GGGTTCAACTAACCCAACATTTTTGTACTTCGCTCATGGTTTGAAGGAGGTCAAGTGCTG 619
Query 597 AGAGAGAAGCTCTCTTTGGGTTACTCTGGTCGG-CGCAGCGACTCTCTAAGTTTATGTTT 655
|||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 620 AGAGAGAAGCTCTCGTTGGGTTACTGTGGTCGGTCGCAGCGACTCTCTAAGTTTATGTTT 679
Query 656 CTTTATATTGTC-TCGTGTTTCGTCGTC--CCC-TATTAAAATTACCTACCAGTTTGCTT 711
|||||||||||| | ||||||||||||| ||| |||||||||||||| ||||||| |||
Sbjct 680 CTTTATATTGTCCT-GTGTTTCGTCGTCGTCCCCTATTAAAATTACCTGCCAGTTTACTT 738
Query 712 TTGTCTCTTCTTCTCTCCTGTGTTGGAT--TTCTTTTAAGTTATTGAATCCG-AAAACAA 768
|| ||||||||| | | |||||||||| |||| |||||||| | |||| |||| ||
Sbjct 739 TTCTCTCTTCTTGTTTTCTGTGTTGGAAGATTCTC--AAGTTATTTATTCCGCAAAA-AA 795
Query 769 CGGTTTATCAGTTT-CTATTAGTTGAATTTTGGTCGT 804
|||||||||| ||| | ||||||||||||||||||||
Sbjct 796 CGGTTTATCA-TTTACAATTAGTTGAATTTTGGTCGT 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5