BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479131
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16650.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2562 0.0
AT4G15900.1 | Symbols: PRL1 | pleiotropic regulatory locus 1 | ... 1249 0.0
> AT3G16650.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:5671067-5675324 FORWARD LENGTH=1724
Length=1724
Score = 2562 bits (1387), Expect = 0.0
Identities = 1585/1678 (94%), Gaps = 23/1678 (1%)
Strand=Plus/Plus
Query 1 CCTATTTCCCTCTCTTCTC-TCCGTCTCTT-TCGTTCTGATTCTGATTGTTCGTGTAAAA 58
||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||
Sbjct 1 CCTATTTCCCTCTCTTCTCTTCCGTCT-TTCTCGTTCTGTTTCTGATTGTTCGTGTAAAA 59
Query 59 CCCTAG-ATGACGATGCTAAG-TTTGAGCACGGAAGTCGATACTCAGTCACTGAAAAAAC 116
|||||| ||||||||| | || ||||| || ||| ||||| |||||||||||||||||||
Sbjct 60 CCCTAGAATGACGATGAT-AGCTTTGAACAGGGAGGTCGAAACTCAGTCACTGAAAAAAC 118
Query 117 TCAGCCTCAAATCTGTAACACGAGCTCGTGAACTTTTCTCCCCCGTCCATGGCCAATTTC 176
|||| || |||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 119 TCAGTCTAAAATCTGTTAGACGAGCTCGTGAAATTTTCTCCCCCGTCCATGGCCAATTTC 178
Query 177 CTCCGCCTGATCCTGAAAGCAAAAGAATTCGGCTCTGCCATAAGATTCAAGTTTCATTTG 236
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 179 CTCAGCCTGATCCTGAAAGCAAAAGAATTCGGCTCTGCCATAAGATTCAAGTTGCATTTG 238
Query 237 GAGGCGTAGAACCTGCAAGTAAGCCTACACGTAGTGCTGAACATAACAGTGAAAAGACGG 296
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 239 GAGGCGTAGAACCTGCAAGTAAGCCTACACGTATTGCTGACCATAACAGTGAAAAGACGG 298
Query 297 CTCCATCGAATGCCCTTGCCCTTCCAGGTCCAGAAGGTTCCAAGGAACTTCGAAAAGGCA 356
|||||| ||| |||||||| |||||||||||| |||| |||||||||||||||||| ||
Sbjct 299 CTCCATTGAAAGCCCTTGCGCTTCCAGGTCCAAAAGGGTCCAAGGAACTTCGAAAAAGCG 358
Query 357 CAACAGAGAAAGCTTTAGTTGTTGGTCCAACTTTACCGTCAAGAGACTTGAACAATACTG 416
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 359 CAACAGAGAAAGCTTTAGTTGTTGGTCCAACTTTACCGCCAAGAGACTTGAACAATACTG 418
Query 417 GTAATCCAGGCAAAAGCACGGCCATTCTTCCTGCATCTGGATCCTTTTCTGAAAGAAATC 476
||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct 419 GTAATCCAGGCAAAAGCACGGCCATTCTTCCTGCACCTGGATCATTTTCCGAAAGAAATC 478
Query 477 TGTCAACTGCTGCTTTAATGGAGAGAATGCCTAGTAGATGGCCTCGTCCAGAGTGGCATG 536
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 TGTCAACTGCTGCTTTAATGGAGAGAATGCCTAGTAGATGGCCCCGTCCAGAGTGGCATG 538
Query 537 CACCATGGAAGAATTACAGGGTGATCCAGGGACACTTGGGTTGGGTCAGATCTGTTGCGT 596
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 CACCATGGAAGAATTACAGGGTGCTCCAGGGACACTTGGGTTGGGTCAGATCTGTTGCGT 598
Query 597 TTGACCCAAGTAATGAATGGTTTTGCACTGGTTCAGCTGATCGTACCATCAAGATATGGG 656
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGACCCAAGCAATGAATGGTTTTGCACTGGTTCAGCTGATCGTACCATCAAGATATGGG 658
Query 657 ATGTAGCGACCGGAGTTCTGAAACTCACACTTACTGGACATATAGGGCAAGTACGAGGCC 716
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATGTAGCGACTGGAGTTCTGAAACTCACACTTACTGGACATATAGGGCAAGTACGAGGCC 718
Query 717 TCGCTGTAAGCAATAGACATACCTATATGTTTTCTGCTGGTGATGACAAGCAAGTCAAAT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCGCTGTAAGCAATAGACATACCTATATGTTTTCTGCTGGTGATGACAAGCAAGTCAAAT 778
Query 777 GCTGGGACCTTGAGCAGAATAAGGTTATTCGATCTTATCATGGTCATTTGCATGGCGTTT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCTGGGACCTTGAGCAGAATAAGGTTATTCGATCTTATCATGGTCATTTGCATGGCGTTT 838
Query 837 ACTGTTTAGCTCTTCATCCAACGCTAGATGTTATACTAACCGGAGGGCGAGACTCTGTCT 896
||||||||||||||||||| || || |||||| |||||||||||||||||||||||||||
Sbjct 839 ACTGTTTAGCTCTTCATCCTACTCTTGATGTTGTACTAACCGGAGGGCGAGACTCTGTCT 898
Query 897 GCAGGGTATGGGATATCCGTACGAAGATGCAAATTTTTGTACTCCCACATAAC-GCAGAT 955
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 899 GCAGGGTATGGGATATCCGTACGAAGATGCAAATTTTTGTACTCCCACATGACAGC-GAT 957
Query 956 GTTTTTTCCGTTGTAGCCCGTCCAACTGATCCACAAGTTATTACAGGGTCTCATGACTCA 1015
|||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 958 GTTTTTTCCGTTTTGGCCCGCCCAACTGATCCACAAGTTATTACAGGGTCTCATGACTCA 1017
Query 1016 ACCATCAAATTTTGGGATCTCCGATTTGGCAAATCGATGTTAAATATAACGAATCATAAG 1075
||||||||||||||||| ||||||| ||||||||||||| || |||||||||||||||
Sbjct 1018 ACCATCAAATTTTGGGACCTCCGATATGGCAAATCGATGGCAACCATAACGAATCATAAG 1077
Query 1076 AAGACTGTCCGAGCAATGGCTCTCCATCCGAAAGAGAATGCTTTTGTTTCTGCATCAGCT 1135
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1078 AAGACTGTCCGAGCAATGGCTCTCCATCCGAAAGAGAATGATTTTGTTTCTGCATCAGCT 1137
Query 1136 GACAATATCAAGAAGTTTAGCCTTCCTAAGGGAGAGTTTTGCCACAACATGCTTTCTCTG 1195
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GACAACATCAAGAAGTTTAGCCTTCCTAAGGGAGAGTTTTGCCACAACATGCTTTCTCTA 1197
Query 1196 CAGAGAGACACAATTAACGCAGTGGCTGCGAACGAGGATGGCGTAATGGCCACTGGAGGT 1255
|||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 1198 CAGAGAGACATAATTAACGCAGTGGCTGTGAATGAGGATGGCGTAATGGTCACTGGAGGT 1257
Query 1256 GATAAAGGTGGCTTATGGTTCTGGGACTGGAAGAGTGGTCACAATTTCCAACAGGCAGAA 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1258 GATAAAGGTGGCTTATGGTTCTGGGACTGGAAGAGTGGTCACAATTTCCAACGGGCAGAA 1317
Query 1316 ACTATTGTACAGCCCGGTTCGCTGGAGAGTGAAGCCGGTATATACGCAGCGTGTTACGAT 1375
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1318 ACTATTGTACAGCCTGGTTCGCTGGAGAGTGAAGCAGGTATATATGCAGCGTGTTACGAT 1377
Query 1376 -AGGACGGGTTCAAGGCTGTTAACGTGTGAGGCAGACAAAACAATAAAGATGTGGAAGGA 1434
|| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1378 CAG-ACGGGTTCAAGGCTGGTAACGTGTGAGGGAGACAAAACAATAAAGATGTGGAAGGA 1436
Query 1435 AGACGAGAATGCAACTCCTGAAACTCATCCTCTCAACTTCAAACCTCCCAAAGAGATCAG 1494
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AGACGAGGATGCAACTCCTGAAACTCATCCTCTCAACTTCAAACCTCCCAAAGAGATCAG 1496
Query 1495 ACGCTTCTGAGGTTTCTCTCTCTTACAAGTTACACCTCTCTAATCCCAAACTCGAAGTCA 1554
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1497 ACGCTTCTGAGGTTTCCCTCTCTTACAAGTTACACCTCTCTAATATCAAACTCGAAGCCA 1556
Query 1555 GaaaaaaaaaC-CACTAATCTCACTCTGGATaaaaaaaaaaaaCCTTGTTTATGTGATAT 1613
|||||||||| ||||||||||||||||||| |||||||| ||||| ||||| |||
Sbjct 1557 GAAAAAAAAAATCACTAATCTCACTCTGGATTAAAAAAAA---CCTTGGTTATGC--TAT 1611
Query 1614 ATTTTTACCAGTTCTTCTTCAAGATAGAGAAGGGAAAATAACAGCATTGTAGTTTCTT 1671
|| | | ||||||||||||||||| | || |||| |||||||||||||||||||
Sbjct 1612 AT----A--ATTTCTTCTTCAAGATAGATATGGAAAAA-AACAGCATTGTAGTTTCTT 1662
> AT4G15900.1 | Symbols: PRL1 | pleiotropic regulatory locus 1
| chr4:9023728-9027666 FORWARD LENGTH=1731
Length=1731
Score = 1249 bits (676), Expect = 0.0
Identities = 1195/1440 (83%), Gaps = 58/1440 (4%)
Strand=Plus/Plus
Query 101 CAGTCACTGAAAAAACTCAGCCTCAAATCTGT-AACACGAGCTCGTGAACTTTTCTCCCC 159
|||||||||||||| ||||| |||||||| | || |||| | | |||||| ||||| ||
Sbjct 87 CAGTCACTGAAAAAGCTCAGTCTCAAATCCCTCAA-ACGATCACTTGAACTCTTCTCTCC 145
Query 160 CGTCCATGGCCAATTTCCTCCGCCTGATCCTGAAAG-CAA-AAGAATTCGGCTCTGCCAT 217
||||||||||||||| ||||| ||||| || | ||| ||| || ||||| ||| |||||
Sbjct 146 CGTCCATGGCCAATTCCCTCCTCCTGA-CCCGGAAGCCAAGCAG-ATTCGTCTCAGCCAT 203
Query 218 AAGATTCAAGTTTCATTTGGAGGCGTAGAACC---TGCAAGT-AAGCCTACACGT-AGTG 272
||||| ||||| | |||||||| |||||||| || ||| || ||| ||||| |
Sbjct 204 AAGATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAA-CCTCCACGTCA-AC 261
Query 273 CTGAACATAACAGTGAAAAGAC-GGCTCCATCGAATGCCCTTGCCCTTC-CAGGTCCAGA 330
|||| | | || ||| || | || || || ||||| ||| ||| || ||| ||| ||
Sbjct 262 CTGACCGCATCAATGAGCAGCCAGG-ACCTTCAAATGCTCTTTCCC-TCGCAGCTCCTGA 319
Query 331 AGGTTCCAAGGAACTTCG-AAAA-GGCACAACAGAGAAAGCT-TTAGTTGTTGGTCCAAC 387
||| || || | | | || |||| || | ||||||| ||| || ||||||||||||||
Sbjct 320 AGGGTCTAA-G-AGTACGCAAAAGGGTGCGACAGAGAGTGCTATT-GTTGTTGGTCCAAC 376
Query 388 TTTAC--CGT-C-A-A--G-----AGACTTGAACAATACTGG-TAATCCAGGCAAAAGCA 434
||||| ||| | | | | || ||||||| |||| || | | |||| || ||||
Sbjct 377 TTTACTGCGTCCAATACTGCCTAAAGGCTTGAACTATACAGGTTCCT-CAGGGAAGAGCA 435
Query 435 CGGCCATTCTTCCTGCATCTGGATCCTT-TTCTGAAAGAAATCTGTCAACTGCTGCTTTA 493
| ||||| | |||||| || || ||| | | |||||||||||||||||||||| |||
Sbjct 436 CCACCATTATACCTGCAAATGTAT-CTTCATATCAAAGAAATCTGTCAACTGCTGCATTA 494
Query 494 ATGGAGAGAATGCCTAGTAGATGGCCTCGTCCAGAGTGGCATGCACCATGGAAGAATTAC 553
||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 495 ATGGAGAGAATACCAAGTAGATGGCCCCGGCCAGAGTGGCATGCACCATGGAAGAATTAC 554
Query 554 AGGGTGATCCAGGGACACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCCAAGTAATGAA 613
||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 555 AGGGTCATTCAGGGGCACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCCGAGTAATGAA 614
Query 614 TGGTTTTGCACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGCGACCGGAGTT 673
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 615 TGGTTTTGTACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGCAACTGGAGTT 674
Query 674 CTGAAACTCACACTTACTGGACATATAGGGCAAGTACGAGGCCTCGCTGTAAGCAATAGA 733
||||| || ||||||||||| ||||| | |||||||||||||||||||||||||||| ||
Sbjct 675 CTGAAGCTAACACTTACTGGGCATATCGAGCAAGTACGAGGCCTCGCTGTAAGCAATCGA 734
Query 734 CATACCTATATGTTTTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAG 793
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CATACCTATATGTTCTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAG 794
Query 794 AATAAGGTTATTCGATCTTATCATGGTCATTTGCA-TGGCGTTTACTGTTTAGCTCTTCA 852
||||||||||| ||||||||||||||||| ||| | ||| || || || |||||||| ||
Sbjct 795 AATAAGGTTATCCGATCTTATCATGGTCACTTG-AGTGGTGTCTATTGCTTAGCTCTGCA 853
Query 853 TCCAACGCTAGATGTTATACTAACCGGAGGGCGAGACTCTGTCTGCAGGGTATGGGATAT 912
||||| | |||||| || |||| || ||||||||||||||||||||||| ||||||||
Sbjct 854 CCCAACTTTGGATGTTTTATTAACTGGGGGGCGAGACTCTGTCTGCAGGGTGTGGGATAT 913
Query 913 CCGTACGAAGATGCAAATTTTTGTACTCCCA---CATAACG-CAGATGTTTTTTCCGT-T 967
||||| |||||||||||||||| |||| || ||| || || |||| ||| || |
Sbjct 914 TCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGACAACACC-GTTTGTTCTGTAT 972
Query 968 GTAGCCCGTCCAACTGATCCACAAGTTATTACAGGGTCTCATGACTCAACCATCAAATTT 1027
|| | |||||||| || ||||||||| | || || || |||||| | ||||| ||||||
Sbjct 973 TTA-CTCGTCCAACAGACCCACAAGTTGTCACCGGATCCCATGACACGACCATTAAATTT 1031
Query 1028 TGGGATCTCCGATTTGGCAAATCGATGTTAAATATAACGA-ATCATAAGAAGA-CTGTCC 1085
||||| || |||| ||| ||| | |||| || |||| | |||||||||| | ||||||
Sbjct 1032 TGGGACCTTCGATATGGAAAAACAATGTCAACGCTAAC-ACATCATAAGAA-ATCTGTCC 1089
Query 1086 GAGCAATGGCTCTCCATCCGAAAGAGAATGCTTTTGTTTCTGCATCAGCTGACAATATCA 1145
|||||||| | |||||||| ||||||||||| |||| |||||||||||||||||| | ||
Sbjct 1090 GAGCAATGACCCTCCATCCTAAAGAGAATGCCTTTGCTTCTGCATCAGCTGACAACACCA 1149
Query 1146 AGAAGTTTAGCCTTCCTAAGGGAGAGTTTTGCCACAACATGCTTTCTCTGCAGAGAGAC- 1204
|||| ||||||||||| ||||||||||| ||||||||||||||||| | |||| | ||
Sbjct 1150 AGAAATTTAGCCTTCCAAAGGGAGAGTTCTGCCACAACATGCTTTCGCAACAGAAA-ACC 1208
Query 1205 ACAATTAACGCAGTGGCTGCGAACGAGGATGGCGTAATGGCCACTGGAGGTGATAAAGGT 1264
| |||||| ||| |||||| ||||||||||| || |||| ||||||||||||||| ||
Sbjct 1209 ATAATTAATGCAATGGCTGTAAACGAGGATGGTGTGATGGTCACTGGAGGTGATAATGGA 1268
Query 1265 GGCT-TATGGTTCTGGGACTGGAAGAGTGGTCACAATTTCCAACAGGCAGAAACTATTGT 1323
| | |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||
Sbjct 1269 AG-TATATGGTTCTGGGACTGGAAGAGTGGTCACAGTTTCCAACAGTCAGAAACTATCGT 1327
Query 1324 ACAGCCCGGTTCGCTGGAGAGTGAAGCCGGTATATACGCAGCGTGTTACGATAGGACGGG 1383
|||||| ||||| |||||||||||||| |||||||| ||||||||||| |||| || ||
Sbjct 1328 ACAGCCTGGTTCCCTGGAGAGTGAAGCGGGTATATATGCAGCGTGTTATGATAATACAGG 1387
Query 1384 TTCAAGGCTGTTAACGTGTGAGGCAGACAAAACAATAAAGATGTGGAAGGAAGACGAGAA 1443
|||||| || |||| || ||||| || || || |||||||||||||| ||||| |||||
Sbjct 1388 TTCAAGATTGGTAACATGCGAGGCTGATAAGACGATAAAGATGTGGAAAGAAGATGAGAA 1447
Query 1444 TGCAACTCCTGAAACTCATCCTCTCAACTTCAAACCTCCCAAAG-AGATCAGACGCTTCT 1502
||||||||| |||||||||||| |||| |||||||| || |||| |||| || |||||||
Sbjct 1448 TGCAACTCCAGAAACTCATCCTATCAATTTCAAACCACC-AAAGGAGATTAGGCGCTTCT 1506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5