BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479135
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16690.1 | Symbols: SWEET16, AtSWEET16 | Nodulin MtN3 family... 1103 0.0
> AT3G16690.1 | Symbols: SWEET16, AtSWEET16 | Nodulin MtN3 family
protein | chr3:5684359-5686490 REVERSE LENGTH=962
Length=962
Score = 1103 bits (597), Expect = 0.0
Identities = 740/808 (92%), Gaps = 13/808 (2%)
Strand=Plus/Plus
Query 1 TCTCATCCTCTTTCAAGTC-TTCTCTATCTACCTTCCTCAGAAACCCATCCCCAGATATG 59
||||||||| ||||||||| |||||||||||| |||||||||||||||||| |||| |||
Sbjct 9 TCTCATCCTATTTCAAGTCTTTCTCTATCTACTTTCCTCAGAAACCCATCCTCAGAGATG 68
Query 60 GTAGACTTGAGTTTCTATGTTGGAGTCATAGGAAATGTGATATCGGTGCTTGTCTTCCTC 119
| |||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 69 GCAGACTTGAGTTTTTATGTCGGAGTCATAGGGAATGTTATATCGGTGCTTGTCTTCCTC 128
Query 120 TCCCCTGTGGAGACGTTTTGGAGGATAGTGCAACGTAGATCGACGGAGGAGTACGAGTGT 179
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 129 TCCCCTGTGGAGACGTTTTGGAGGATAGTGCAGCGGAGATCGACGGAGGAATACGAGTGT 188
Query 180 TTGCCGTACATTTGCACGTTGATGAGCTCGTCGTTATGGACATATTACGGAATAGTGACA 239
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 189 TTTCCGTACATTTGCACGTTAATGAGCTCGTCGTTATGGACATATTACGGAATAGTGACA 248
Query 240 CCTGGTGAATACTTGGTTTCTACGGTCAATGGCTTTGGTGCTCTTGCTGAATCCATTTAT 299
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 249 CCTGGTGAATACTTGGTTTCTACTGTCAATGGCTTTGGTGCTCTTGCTGAATCCATCTAC 308
Query 300 GTTCTCATTTTCCTCTTCTTTGTCCCCAAACCCAGATTCTTGAAAACAATTGTAGTGGTT 359
|||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||
Sbjct 309 GTTCTCATTTTCCTCTTCTTTGTCCCCAAATCCAGATTCTTGAAAACAGTTGTTGTGGTT 368
Query 360 CTAGCTTTGAACGTGTGTTTCCCAGTTTTGGCGATTGTGGGAACAAGAACTGC-GTTTGA 418
||||||||||||||||||||||||||| | ||||||| ||||||||||||| | |||||
Sbjct 369 CTAGCTTTGAACGTGTGTTTCCCAGTTATCGCGATTGCGGGAACAAGAACT-CTGTTTGG 427
Query 419 AGATGAAAACAAGCGTTCGAGTTCAATGGGTTTCATATGTGCTACTCTCAACATCGCCAT 478
||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 428 AGATGCAAACTCGCGTTCTAGTTCAATGGGTTTCATATGTGCTACTCTCAACATTATCAT 487
Query 479 GTATGGTTCTCCTCTTTCAGCTATTAAAACGGTTGTGACGACGAGGAGTGTGCAATTTAT 538
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 488 GTATGGTTCTCCTCTTTCAGCTATTAAAACGGTTGTGACGACGAGAAGTGTGCAGTTTAT 547
Query 539 GCCGTTTTGGTTGTCGTTTTTCCT-TTTCCTAAACG-CTGCGATTTGGGGTGTCTACGCT 596
||| ||||||||||| |||||||| |||| | |||| | |||||||||||||||||||||
Sbjct 548 GCCATTTTGGTTGTCATTTTTCCTCTTTC-TGAACGGC-GCGATTTGGGGTGTCTACGCT 605
Query 597 TTCCTCCTACATGATGTTTTTCTACTAGTGCCAAATGGAATGGGGTTCTTGCTTGGGACA 656
|| |||||||| ||| | |||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 606 TTACTCCTACACGATATGTTTCTACTAGTGCCAAATGGAATGGGATTCTTTCTTGGGATA 665
Query 657 ATGCAACTCCTAATTTATGCCTATTACAGAAATGCCCAACCTAAT-GTAGAAGATGAAGA 715
|||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||
Sbjct 666 ATGCAACTCCTAATTTATGCCTATTACAGAAATGCCGAACC-AATTGTAGAAGATGAAGA 724
Query 716 AGGCCTCATACCAAGCCAACCTCTTCTCTCTTAACCTCAG-CTTTTATCCATAAAAATAA 774
|||||||||||||| |||||||| ||| ||||||||| | |||||| |||| |||||
Sbjct 725 AGGCCTCATACCAAATCAACCTCTCCTCGCTTAACCTC-GTCTTTTACCCATCAAAATTT 783
Query 775 CTAAAACAATTCAATTCTTGACAAACAA 802
|||||| |||| | | || |||||||||
Sbjct 784 CTAAAATAATTTA-TCCT-GACAAACAA 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5