BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479137
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16700.1 | Symbols: | Fumarylacetoacetate (FAA) hydrolase f... 1151 0.0
AT4G15940.1 | Symbols: | Fumarylacetoacetate (FAA) hydrolase f... 689 0.0
> AT3G16700.1 | Symbols: | Fumarylacetoacetate (FAA) hydrolase
family | chr3:5687721-5689719 FORWARD LENGTH=818
Length=818
Score = 1151 bits (623), Expect = 0.0
Identities = 691/723 (96%), Gaps = 8/723 (1%)
Strand=Plus/Plus
Query 1 TTGACATAAAAATGGCGACTTCGATGATTCAGAGATTGTTCAAGCAAGGCACAAAGATCG 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 78 TTGACATAAAAATGGCGACTTCGATGATTCAGAGATTGTTCAAACAAGGCACAAAGATCG 137
Query 61 TCGGCGTTGGACTCAATTACGCTTCCCACGCCAAAGAACTTGGCAACGCCCTCCCAAAGG 120
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 138 TCGGCGTTGGACTCAATTACGCTTCTCACGCCAAAGAACTTGGCAATGCCCTCCCAAAGG 197
Query 121 ACCCGATTGTGTTCTTGAAGCCAACCTCTTCGTACCTGGAAAACGGTGGAACAATAGAGA 180
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 198 ACCCGATTGTGTTCTTAAAGCCAACTTCGTCGTACCTGGAAAACGGTGGAACAATAGAGA 257
Query 181 TCCCACATCCTCTGGATTCACTTCACCATGAGGTGGAACTTGCTGTAGTGATTGGACAGA 240
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 258 TCCCACATCCACTGGATTCACTTCACCATGAGGTGGAACTTGCTGTAGTAATTGGACAGA 317
Query 241 AAGCAAGAGATGTTCCAGAACGGTTAGCCATGGATTACATTGGAGGATATGCGCTTGCTC 300
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 318 AAGCAAGAGATGTCCCAGAACGGTTAGCCATGAATTACATTGGAGGATATGCGCTTGCTC 377
Query 301 TTGATATGACTGCTAGGGAACTCCAAGTTTCTGCCATGGCATCTGGTCTCCCATGTACGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TTGATATGACTGCTAGGGAACTCCAAGTTTCTGCCATGGCATCTGGTCTCCCATGTACGC 437
Query 361 TTGCTAAAGGACAGGATACCTTCACTCCCATCAGCTCCGTTTTACCAAAGGCAATGGTGG 420
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 438 TTGCTAAAGGACAGGATACCTTCACCCCCATCAGCTCCGTTCTACCAAAGGCAATGGTGC 497
Query 421 TGGTGGTGGATCCCAATAACCTGGAACTTTGGCTTAAGGTCGATGATGAGACAAGACAGA 480
||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 498 TGG------ATCCCAATAACCTGGAACTCTGGCTAAAGGTAGATGATGAGACAAGACAGA 551
Query 481 AAGGTTGGACAAAGGATATGATCTTCAAGGTCCCATATCTCATCAGCTACATAAGCTCTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 552 AAGGTTGGACAAAGGATATGATCTTCAAGGTCCCATATCTCATCAGCTACATAAGTTCTG 611
Query 541 TAATGACCCTTTTCAAAGGAGATGTTATATTGACAGGTACACCAGAAGGTATAGGACCTG 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 612 TAATGACCCTTTTCAAAGGAGATGTCATATTGACAGGTACACCAGAAGGTATAGGACCTG 671
Query 601 TAAAGATTGGTCAGAAGATAACCGCCGGAATCACCGGTCTTTCTGAAGTTCAGTTCGACG 660
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 TAAAGATAGGTCAGAAGATAACCGCCGGAATCACCGGTCTTTCTGAAGTTCAGTTCGACG 731
Query 661 TAGGTAGGCGTATAAAGCCATTGTTGAGATAGTGTTTTGTGAATC-TCTTGTTGTATAAT 719
| |||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 732 TCGGTAGGCGGCTAAAGCCATTGTTGAGATAGTATTTTGTGAATCAT-TTGTTGTATAAA 790
Query 720 CTT 722
|||
Sbjct 791 CTT 793
> AT4G15940.1 | Symbols: | Fumarylacetoacetate (FAA) hydrolase
family | chr4:9038289-9040370 FORWARD LENGTH=948
Length=948
Score = 689 bits (373), Expect = 0.0
Identities = 582/681 (85%), Gaps = 21/681 (3%)
Strand=Plus/Plus
Query 9 AAAATGGCGACTTCGATGATTCAGA-GATTGTTCAAGCAAGGCACAAAGATCGTCGGCGT 67
||||||||||| |||||||| |||| || ||||||||||||| || ||||||||| ||||
Sbjct 70 AAAATGGCGACGTCGATGATACAGAGGA-TGTTCAAGCAAGGGACGAAGATCGTCTGCGT 128
Query 68 TGGAC-TCAATTACGCTTCCCACGCCAAAGAACTTGGCAACGCCCTCCCAAAGG-ACCCG 125
|| | | || ||||| | |||||||||||||| ||||||||| |||| |||| ||| |
Sbjct 129 CGGCCGT-AACTACGCCGCTCACGCCAAAGAACTAGGCAACGCCGTCCCCAAGGAACCAG 187
Query 126 ATTGTGTTCTTGAAGCCAACCTCTTCGTACCTGGAAAACGGTGGAACAATAGAGATCCCA 185
|| | |||||||||||||| || || ||| | ||||| || |||||||| |||||||||
Sbjct 188 -TTATATTCTTGAAGCCAACATCATCATACTTAGAAAATGGAGGAACAATTGAGATCCCA 246
Query 186 CATCCTCTGGATTCACTTCACCATGAGGTGGAACTTGCTGTAGTGATTGGACAGAAAGCA 245
|||||| ||||||||||||||||||| || ||||| ||| |||||||||||||||||||
Sbjct 247 CATCCTTTGGATTCACTTCACCATGAAGTAGAACTCGCTTTAGTGATTGGACAGAAAGCT 306
Query 246 AGAGATGTTCCAGAA-CGGTTAGCCATGGATTACATTGGAGGATATGCGCTTGCTCTTGA 304
|||||||| || ||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 307 AGAGATGTACCTGAATC-AATAGCCATGGATTACATTGGAGGATATGCGGTTGCTCTTGA 365
Query 305 TATGACTGCTAGGGAACTCCAAGTTTCTGCCATGGCATCTGGTCTCCCATGTACGCTTGC 364
||||||||||||||||||||||| |||||| | |||||||||||||||||| ||| ||||
Sbjct 366 TATGACTGCTAGGGAACTCCAAGCTTCTGCTAAGGCATCTGGTCTCCCATGGACGGTTGC 425
Query 365 TAAAGGACAGGATACCTTCACTCCCATCAGCTCCGTTTTACCAAAGGCAATGGTGGTGGT 424
|||||||| |||||||||||||| |||||||| ||| | |||||||| |||||| | |
Sbjct 426 GAAAGGACAAGATACCTTCACTCCTATCAGCTCTGTTCTGCCAAAGGCGATGGTGC-G-T 483
Query 425 GGTGGATCCCAATAACCTGGAACTTTGGCTTAAGGTCGATGATGAGACAAGACAGAAAGG 484
| ||||| |||| || ||||||||||| ||||| |||| ||| ||||||||||| ||
Sbjct 484 G----ATCCCGATAATCTAGAACTTTGGCTCAAGGTTGATGGTGAAACAAGACAGAAGGG 539
Query 485 TTGGAC-AAAGGATATGATCTTCAAGGTCCCATATCTCATCAGCTACATAAGCTCTGTAA 543
|| ||| |||| ||||||| ||||||||||| || ||||| ||||||||||| ||| |||
Sbjct 540 TTTGACCAAAG-ATATGATATTCAAGGTCCCCTACCTCATTAGCTACATAAGTTCTATAA 598
Query 544 TGACCCTTTTCAAAGGAGATGTTATATTGACAGGTACACCAGAAGGTATAGGACCTGTAA 603
||||||||| | |||||||| || |||||||| |||||||||||| | ||||||||||
Sbjct 599 TGACCCTTTAC---GGAGATGTCATCTTGACAGGCACACCAGAAGGTGTTGGACCTGTAA 655
Query 604 AGATTGGTCAGAAGATAACCGCCGGAATCACCGGTCTTTCTGAAGTTCAGTTCGACGTAG 663
|||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |
Sbjct 656 AGATAGGTCAGAAGATAACGGCCGGAATCACCGGTCTATCTGAAGTTCAATTCGATGTGG 715
Query 664 -GTAGGCGTATAAAGCCATTG 683
| |||||| ||||||| |||
Sbjct 716 AG-AGGCGTGTAAAGCCCTTG 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35013200459
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5