BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479138
Length=1513
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16710.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2132 0.0
AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 791 0.0
> AT3G16710.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:5690020-5691543 FORWARD LENGTH=1524
Length=1524
Score = 2132 bits (1154), Expect = 0.0
Identities = 1404/1524 (92%), Gaps = 19/1524 (1%)
Strand=Plus/Plus
Query 1 ATGCGTAGATCCATTACCACTGGGTTTGCGTCGATAGTGAAGAAGGGGTTTCA---TC-T 56
||||||||||||||| | |||||||||||||||||||| |||||| ||||| || |
Sbjct 1 ATGCGTAGATCCATTGCGACTGGGTTTGCGTCGATAGT---GAAGGGATTTCATCTTCAT 57
Query 57 --TCATAGACATCGTCTTCAGATAAGTAATCAC-GGAGCTTCTCCGACCTTAAGCCTTTG 113
||||||||||||||| ||||||||||| | | || || || | |||||||||||||
Sbjct 58 AGTCATAGACATCGTCTACAGATAAGTAA-CCCTAGAACTGCTGCTTCCTTAAGCCTTTG 116
Query 114 TGGTTTCTGTTTCTGGATTCGAGCTTTCTCTAACTACCGGAAGATTTTGAGAAATGGTCT 173
||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |||||
Sbjct 117 TGGTTTCTGTTTCTGGATTCGAGCTTTTTCTAGTTACCGAAAGATTTTGAGAAACGGTCT 176
Query 174 TCACAATCTTCAGTTTAACGAGGCTCTTGATTTGTTCACTCGTATGGTTCACTCTCGTCC 233
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 177 TCACAATCTTCAGTTTAATGATGCTCTTGATTTGTTCACTCGTATGGTTCACTCTCGTCC 236
Query 234 TCTTCCTTCAATTGTCGATTTCACTAGGCTGTTGAGTGTTATCGCAAAGATGAAGAGGTT 293
|||||||||||| ||||||||||||| | ||||||||||| ||||||||||| || |
Sbjct 237 CCTTCCTTCAATTATCGATTTCACTAGATTATTGAGTGTTATTGCAAAGATGAATAGATA 296
Query 294 TGATGTTGTGATCTCTCTATTCGAGCAAATGCAAATTCTGGGAATTTCACCTGTT-TTGT 352
|||||||||||| ||||| || |||||||||||||| ||||| ||| ||||| || || |
Sbjct 297 TGATGTTGTGATTTCTCTCTTTGAGCAAATGCAAATCCTGGGGATTCCACCTCTTCTT-T 355
Query 353 ATACCTGCAATATCGTTATGAATTGTGTTTGTCGATCTTCTCAACCTTGTCGTGCTTCGT 412
||| ||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||
Sbjct 356 GTACTTGCAATATCGTTATGCATTGTGTTTGTCTATCTTCTCAGCCTTGTCGTGCTTCGT 415
Query 413 GTTTTCTTGGGAAGATGATGAAACTTGGTTTTGAACCTGACTTAGTCACGTTTACTTCTC 472
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 416 GCTTTCTTGGGAAGATGATGAAACTTGGTTTTGAGCCTGACTTAGTCACGTTTACTTCTC 475
Query 473 TGCTTCATGGATACTGTCAGTGGAATAGAATTGAGGATGCTTTAGCTTTGTTTGATCAGA 532
||||| |||| |||||||| ||||||||||||||||||||| ||||| ||||||||||||
Sbjct 476 TGCTTAATGGTTACTGTCATTGGAATAGAATTGAGGATGCTATAGCTCTGTTTGATCAGA 535
Query 533 TTGTT-GGAATGGGATTTAGACCTAATGTTGTGACATACACTACATTGATTCACTGTCTT 591
|| || ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct 536 TT-TTGGGAATGGGATTTAAACCTAATGTTGTGACATACACCACATTGATTCGCTGTCTT 594
Query 592 TGTAAAAACCGACATTTGAACCACGCGGTGGAGATTTTTAACCAGATGGGGGA-TAATGG 650
|||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||
Sbjct 595 TGTAAAAACCGACATTTGAATCACGCGGTGGAGCTTTTTAACCAGAT-GGGGACTAATGG 653
Query 651 GATTAGACCGAATGTTGTTACCTATAACTCTCTTGTAAGCGGTTTTTGCGAGATTGGTAG 710
|| ||||||||||||||||||||| ||| ||||||| | |||| ||||||||||||||||
Sbjct 654 GAGTAGACCGAATGTTGTTACCTACAACGCTCTTGTTACCGGTCTTTGCGAGATTGGTAG 713
Query 711 ATGGAGCGATGCTGCTTGGCTTCTGAGGGATATGATGAAGAGGGGAATTCAACCTAATGT 770
|||| | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 714 ATGGGGTGATGCTGCTTGGCTTCTGAGGGATATGATGAAGAGGAGAATTGAACCTAATGT 773
Query 771 CATCACTTTCACTGCTTTGATCGATGCGTTTGTTAAAGTAGGGAAGATCATGGAGGCTAA 830
|||||||||||||| ||||||||||||||||| ||||| |||||| | |||||||||||
Sbjct 774 AATCACTTTCACTGCGTTGATCGATGCGTTTGTGAAAGTGGGGAAGCTTATGGAGGCTAA 833
Query 831 AGAACTGTACAAGGTGATGATCCAAATGTCTGTAG-ATCCTGATGTTTTCACTTACACTT 889
|||||||||||| |||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 834 AGAACTGTACAATGTGATGATCCAAATGTCTGT-GTATCCTGATGTTTTCACTTACGGTT 892
Query 890 CACTGATCAATGGGCTTTGCACGTACGGTCACCTAGATGAGGCTAGGCAAATGTTTTATT 949
||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||
Sbjct 893 CACTGATCAATGGGCTTTGCATGTATGGTCTCTTAGATGAGGCTAGGCAAATGTTTTATT 952
Query 950 TGATAGAAAGCAATGGTTGCTACCCAAATGAAGTGACTTATACTACTCTCATACATGGAT 1009
|||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 953 TGATGGAAAGGAATGGTTGCTACCCGAATGAAGTGATTTATACTACTCTCATACATGGAT 1012
Query 1010 TTTGCAAGTCTAAGAGGGTAGAGGACGGGACGAAAATCTTCTATGAGATGTCCCGGAAAG 1069
||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 1013 TTTGCAAGTCTAAAAGGGTAGAGGACGGGATGAAAATCTTCTATGAGATGTCGCAGAAAG 1072
Query 1070 GATTAGTTGCAAACACAATCACTTACACCGTTCTTATCCAGGGTTATTGTCTGGTGGGCA 1129
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1073 GAGTAGTTGCAAACACAATCACTTACACCGTTCTTATCCAGGGTTATTGTCTAGTGGGCA 1132
Query 1130 GGCCCGATGTTGCCCAAGAAGTTTTCAATCAGATGGGTTCTCGCCGTGCGCCTCCGGATA 1189
| || |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 1133 GACCTGATGTTGCCCAAGAAGTTTTCAATCAGATGAGTTCTCGTCGTGCGCCTCCAGATA 1192
Query 1190 TTAGAACCTACAACGTTTTGTTAGATGGTCTTTGTTATAATGGGTACGTAGAAAAGGCAT 1249
|||| || |||||||||||||||||||||||||||| ||||||| | ||||| |||||||
Sbjct 1193 TTAGGACATACAACGTTTTGTTAGATGGTCTTTGTTGTAATGGGAAAGTAGAGAAGGCAT 1252
Query 1250 TGATGATATTCAAATACATGCGGAAGAGGGAGATGGATATTAATATTGTTACATATACTA 1309
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1253 TGATGATATTCGAATACATGCGGAAGAGAGAGATGGATATTAATATTGTTACATATACCA 1312
Query 1310 TCATTATCCAAGGGATGTGCAAGGTTGGTAAGGTGGAAGATGCTTTTGATTTATTTTGTA 1369
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1313 TCATTATTCAAGGGATGTGCAAGCTTGGTAAGGTGGAAGATGCTTTTGATTTATTTTGTA 1372
Query 1370 GCCTTTTCTCCAAAGGAATGAAGCCTAATGTTATAACCTACACCACAATGATATCGGGAT 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GCCTTTTCTCCAAAGGAATGAAGCCTAATGTTATAACCTACACCACAATGATATCGGGAT 1432
Query 1430 TTTGTAGGCGAGGCTTAATTCATGAAGCTGATGCGCTGTTTAAGAAAATGAAAGAAGATG 1489
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1433 TTTGTAGGCGAGGCTTAATTCATGAAGCTGATTCGCTGTTTAAGAAAATGAAAGAAGATG 1492
Query 1490 GGTTCTTACCAAATGAAAGTGTGT 1513
||||||||||||||||||||||||
Sbjct 1493 GGTTCTTACCAAATGAAAGTGTGT 1516
> AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:16478486-16480584 REVERSE LENGTH=2099
Length=2099
Score = 791 bits (428), Expect = 0.0
Identities = 941/1187 (79%), Gaps = 42/1187 (4%)
Strand=Plus/Plus
Query 122 GTTTCTGGATTCGAGCTTTCTCTAACTACCGGA-AGATTTTGAGAAATGGTCTTCACAAT 180
|||||||| |||||||||| | ||| |||| || ||||||||||||||||||||||| |
Sbjct 233 GTTTCTGGGTTCGAGCTTTTTGTAATTACC-GAGAGATTTTGAGAAATGGTCTTCACTCT 291
Query 181 CTTCAGTTTAACGAGGCTCTTGATTTGTTCACTCGTATGGTTCACTCTCGTCCTCTTCCT 240
||||||||||| || ||||| ||||||||||||| |||||| | |||||||||||||||
Sbjct 292 CTTCAGTTTAATGAAGCTCTCGATTTGTTCACTCACATGGTTGAGTCTCGTCCTCTTCCT 351
Query 241 TCAATTGTCGATTTCACTAGGCTGTTGAGTGTTATCG-CAAAGATGAAGAGGTTTGATGT 299
|||||| |||||||||||| | | |||| |||||| | |||| ||||||| |||||||||
Sbjct 352 TCAATTATCGATTTCACTAAGTTATTGAATGTTATTGCCAAA-ATGAAGAAGTTTGATGT 410
Query 300 TGTGATCTCTCTATTCGAGCAAATGCAAATTCTGGGAATTTCACCTGTTTTGTATACCTG 359
||||||| ||| | ||| || |||| || ||||| |||||| || | | ||||| ||
Sbjct 411 TGTGATCAATCTCTGCGACCATCTGCAGATAATGGGAGTTTCACATGATCTCTATACTTG 470
Query 360 CAATATCGTT-ATGAATTGTGTT-TGTCGATCTTCTCAACCTTGTCGTGCTTCGTGTTTT 417
|||| | || ||||||||| || || | ||||||||| |||| || ||| || | ||||
Sbjct 471 CAATCT-TTTGATGAATTGT-TTCTGCCAATCTTCTCAGCCTTATCTTGCCTCATCTTTT 528
Query 418 CTTGGGAAGATGATGAAACTTGGTTTTGAACCTGAC-TTAGTCACGTTTACTTCTCTGCT 476
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| |
Sbjct 529 CTTGGGAAGATGATGAAACTTGGTTTTGAGCCTGATATT-GTCACGTTTACTTCTCTGAT 587
Query 477 TCA-TGGATACTGTCA-GTGGAATAGAATTGAGGATGCTTTAG-CTTTGTTTGA-TCAGA 532
|| ||| | ||||| | |||||||||| ||||| ||| | | || || | || |||||
Sbjct 588 -CAATGGGTTCTGTCTCG-GGAATAGAATGGAGGAGGCTAT-GTCTATGGT-GAATCAGA 643
Query 533 TTGTTGGA-ATGGG-ATTTAGACCTAATGTTGTGACATACACTACATTGATTCACT-GTC 589
| || ||| ||||| ||| | |||| ||||||| | || || ||| | ||| | | |||
Sbjct 644 TGGT-GGAGATGGGGATTAA-ACCTGATGTTGTAATGTATACAACAATCATTGA-TAGTC 700
Query 590 TTTGTAAAAACCGACATTTGAACCACGCGGTGGAGATTTTTA-ACCAGATGGGGGA-TAA 647
|||| |||||| | ||| |||| ||||| || || |||| | || |||| | ||
Sbjct 701 TTTGCAAAAACGGGCATGTGAATTACGCGTTG-AGCCTTTTCGATCAAATGGAAAACTAC 759
Query 648 TGGGATTAGACCGAATGTTGTTACCTATAACTCTCTTGT-AAGCGGTTTTTGCGAGAT-T 705
|||||||||||| ||||||||| || | |||||| || || |||| |||| | | |
Sbjct 760 -GGGATTAGACCGGATGTTGTTATGTACACCTCTCTCGTGAA-CGGTCTTTGTAAC-TCT 816
Query 706 GGTAGATGGAGCGATGCTGCTTGGCTT-CTGAGGGATATGATGAAGAGGGGAATTCAA-C 763
||||||||||| ||||||| || || ||||||| ||||| ||||||| ||| ||| |
Sbjct 817 GGTAGATGGAGAGATGCTGATTCA-TTGCTGAGGGGTATGACGAAGAGGAAAAT-CAAAC 874
Query 764 CTAATGTCATCACTTTCACTGCTTTGATCGATGCGTTTGTTAAAGTAGGGAAGATCATGG 823
|| |||| |||||||||| ||| ||||||||||||||||| |||| ||| ||| | |||
Sbjct 875 CTGATGTAATCACTTTCAATGCATTGATCGATGCGTTTGTGAAAGAAGGAAAGTTTTTGG 934
Query 824 AGGCTAAAGAACTGTACAAGGTGATGATCCAAATGTCTGTAGATCCTGATGTTTTCACTT 883
| ||| ||||| ||||||| | |||||| | |||||| ||| |||| || ||||||| |
Sbjct 935 ATGCTGAAGAATTGTACAATGAGATGATTCGTATGTCTATAGCTCCTAATATTTTCACCT 994
Query 884 ACACTTCACTGATCAATGGGCTTTGCACGTACGGTCACCTAGATGAGGCTAGGCAAATGT 943
| |||||| ||||||||||| |||||| | | ||| |||||||||| || |||||||
Sbjct 995 ATACTTCATTGATCAATGGGTTTTGCATGGAAGGTTGTGTAGATGAGGCCAGACAAATGT 1054
Query 944 TTTATTTGATAGAAAGCAATGGTTGCTACCCAAATGAAGTGACTTATACTACTCTCATAC 1003
|||||||||| |||| ||| ||||| | ||| ||| |||| |||||||| ||||||||
Sbjct 1055 TTTATTTGATGGAAACCAAGGGTTGTTTTCCAGATGTAGTGGCTTATACTTCTCTCATAA 1114
Query 1004 ATGGATTTTGCAAGTCTAAGAGGGTAGAGGACGGGACGAAAATCTTCTATGAGATGTCCC 1063
| || |||||||||| ||||| |||||| || | || |||||||||||| ||||||||||
Sbjct 1115 ACGGGTTTTGCAAGTGTAAGAAGGTAGATGATGCGATGAAAATCTTCTACGAGATGTCCC 1174
Query 1064 GGAAAGGATT-AGTTGCAAACACAATCACTTACACCGTTCTTATCCAGGGTTATTG-TCT 1121
|||||||| | | | || ||| ||||||||||| ||||||||| |||| ||| ||
Sbjct 1175 AAAAAGGATTGACTGGGAA-CACTATCACTTACACTACTCTTATCCAAGGTT-TTGGTCA 1232
Query 1122 GGTGGGCAGGCCCGATGTTGCCCAAGAAGTTTTCAATCAGATGGGTTCTCGCCGTGCGCC 1181
||||||| || |||| |||||||||||||| | ||| |||| |||||| | | |||
Sbjct 1233 AGTGGGCAAACCTAATGTCGCCCAAGAAGTTTTTAGTCATATGGTTTCTCGTGGCGTGCC 1292
Query 1182 TCCGGATATTAGAACCTACAACGTTTTGTTAGATGGTCTTTGTTATAATGGGTACGTAGA 1241
||| ||||||| ||||| || ||||||||| || |||| |||||||| ||| | ||| |
Sbjct 1293 TCCCAATATTAGGACCTATAATGTTTTGTTACATTGTCTATGTTATAACGGGAAGGTAAA 1352
Query 1242 -AAAGGCATTGATGATATTCAAATACATGCGGAAGAGGGAGATGGAT 1287
|||| | ||||||||||| | | |||| ||||| || ||||||
Sbjct 1353 GAAAG-CGTTGATGATATTTGAGGATATGCAAAAGAGAGAAATGGAT 1398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74648210415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5