BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479140
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16720.1 | Symbols: ATL2, TL2 | TOXICOS EN LEVADURA 2 | chr3... 1526 0.0
> AT3G16720.1 | Symbols: ATL2, TL2 | TOXICOS EN LEVADURA 2 | chr3:5692738-5694127
FORWARD LENGTH=1390
Length=1390
Score = 1526 bits (826), Expect = 0.0
Identities = 1004/1087 (92%), Gaps = 24/1087 (2%)
Strand=Plus/Plus
Query 1 TCTGCACTTTCTCACGAACCTCTCTGTCTCGTCCATTACTTCAAAACCAAatctttcatc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 16 TCTGCACTTTCTCACGAACCTCTCTGTCTCGTCCATTACTTAAAAACCAAATCTTTCATC 75
Query 61 atcttcttcttctttcttcaccagttgactctctttctatc--tctctcaatctctctga 118
| ||||| |||||||||||||||||||||| ||| ||||| |||||||| |
Sbjct 76 A------TCTTC---CTTCACCAGTTGACTCTCTTTCAATCTATCTCTGAATCTCTC--A 124
Query 119 atct-ctcactc-tcCACCATGAACACCAACGACCCGGATCCGATTCCCTTTAACAGACC 176
||| || || | ||||||||| ||||||||| |||||||||| || || ||||||
Sbjct 125 CTCTCCT-ACCCGAAAACCATGAACTCCAACGACCAGGATCCGATT-CCGTT--CAGACC 180
Query 177 CGAAG---ACAACTTCTCCGGTTCCAAAACCTACGCAATGAGCGGCAAAATCATGCTAAG 233
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CGAAGACAACAACTTCTCCGGTTCCAAAACCTACGCCATGAGCGGCAAAATCATGCTAAG 240
Query 234 CGCTATAGTAATCCTCTTCTTCGTCGTCATTTTAATGGTCTTCCTCCATCTTTACGCTCG 293
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGCAATAGTAATCCTCTTCTTCGTCGTCATTTTAATGGTCTTCCTCCATCTTTACGCTCG 300
Query 294 TTGGTATCTCCTCCGTGCTCGTAGACGTCATCTCCGTCGTCGTAGCCGTAACCGTCGCGC 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGTATCTCCTCCGTGCTCGTAGACGTCATCTCCGTCGTCGTAGCCGTAACCGTCGCGC 360
Query 354 TACGATGGTTTTCTTCACCGCTGATCCTTCCACCGCCGCTACCTCCGTCGTCGCTTCACG 413
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 361 TACGATGGTTTTCTTCACCGCTGATCCTTCCACCGCCGCAACTTCCGTCGTCGCTTCACG 420
Query 414 TGGACTTGATCCAAACGTGATTAAATCTCTTCCCGTTTTCACTTTCTCCGATGAGACTCA 473
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 421 TGGACTTGATCCAAACGTTATTAAATCTCTTCCTGTTTTCACTTTCTCCGACGAGACTCA 480
Query 474 TAAAGATCCGATCGAATGCGCCGTTTGTTTGTCGGAATTCGAAGAGAGTGAAACGGGTCG 533
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 481 TAAAGATCCGATCGAATGCGCCGTTTGTTTATCGGAATTCGAAGAGAGCGAGACGGGTCG 540
Query 534 GGTTTTGCCCAATTGTAAACATACTTTTCATGTTGATTGTATTGATATGTGGTTTCATTC 593
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGTTTTGCCCAATTGTCAACATACTTTTCATGTTGATTGTATTGATATGTGGTTTCATTC 600
Query 594 TCATTCCACTTGTCCTCTTTGTCGCTCTCTCGTTGAGCCTCTCGCCGGAATTGAATTAAT 653
|||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||
Sbjct 601 TCATTCCACTTGTCCTCTTTGTCGATCTCTCGTTGAGTCTCTCGCCGGGATTGAATCAAC 660
Query 654 GGAGGCGACGACGGAGGGGGAAGTTGTGATTGCGATTGATTCTGACCCGGTTTCTGC-AA 712
|| |||| ||| |||| ||||||||||||||||| |||||||||| ||||||| || ||
Sbjct 661 GGCGGCGGCGAGGGAGAGGGAAGTTGTGATTGCGGTTGATTCTGATCCGGTTT-TGGTAA 719
Query 713 TTGAACCGGGTTCTAGCTCTGGATTGAGGGATGAACCACATGGATCTGGATCTTCTCTGA 772
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 720 TTGAACCGAGTTCTAGCTCTGGATTGACGGATGAACCACATGGATCTGGATCTTCTCAGA 779
Query 773 CGCCGATTGAAGATTCCGGGAGAAAACCGGCGGCGATTGAGGTTCCGAGGAGGAATTTCC 832
|| || |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 TGCTGAGGGAAGATTCCGGGAGAAAACCGGCGGCGATTGAGGTTCCGAGGAGGACTTTTA 839
Query 833 GCGAGTTGGAAGATGAATTGACTCGGAGAGACTCGCCGGCGAGTCAGTCGTTTAGATCGC 892
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 840 GCGAGTTTGAAGATGAGTTGACTCGGAGAGACTCGCCGGCGAGTCAGTCGTTTAGGTCTC 899
Query 893 CGATGAGTCGGATGTTATCTTTCACTCGGATGTTGAGTAGAGATAGAAGAAGCGCTTCGT 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGATGAGTCGGATGTTATCTTTCACTCGGATGTTGAGTAGAGATAGAAGAAGCGCTTCGT 959
Query 953 CTCCTATCGCCGGAGCTCCGCCGGTATCTCCGTCGTTGAGTTGCCGGATACAGATGACCG 1012
||||||||||||||||||||||| |||| ||| |||| || |||||||||||||||||||
Sbjct 960 CTCCTATCGCCGGAGCTCCGCCGCTATCGCCGACGTTAAGCTGCCGGATACAGATGACCG 1019
Query 1013 AGTCAGATATCGAGCAGGGAGGAGAAGACAGTAGGTGACTTGCCACGTGGTGGTGTCTGA 1072
||||||||||||| | |||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct 1020 AGTCAGATATCGAACGGGGAGGAGAAGAGAGTAGGTGACTTGTCACGTGTTGGTGTCTGA 1079
Query 1073 TTGGTTT 1079
|||||||
Sbjct 1080 TTGGTTT 1086
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1253 ACAATCCAATGGTCATAATTGTGATAAA 1280
||||||||||||||||||||||||||||
Sbjct 1349 ACAATCCAATGGTCATAATTGTGATAAA 1376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5