BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479143
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16780.1 | Symbols: | Ribosomal protein L19e family protein... 1306 0.0
AT1G02780.1 | Symbols: emb2386 | Ribosomal protein L19e family ... 466 2e-130
> AT3G16780.1 | Symbols: | Ribosomal protein L19e family protein
| chr3:5708925-5710579 FORWARD LENGTH=1017
Length=1017
Score = 1306 bits (707), Expect = 0.0
Identities = 800/842 (95%), Gaps = 17/842 (2%)
Strand=Plus/Plus
Query 1 AACGCAGAGAGGCGGAGAGGAGAAGGAAGACGGTGAGAAGCAATGGTGTCGCTGAAGCTC 60
|||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| ||
Sbjct 16 AACGGAGAGAGGCGGAGAGGAGAAGGAAGACGGCGTGAAGCAATGGTGTCGCTGAAGATC 75
Query 61 CAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAGGGAAAAGTTTGGCTCGATCCC 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 76 CAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAGGAAAAGTTTGGCTCGACCCC 135
Query 121 AATGAATCTGGCGATATTTCTATGGCCAATTCCAGGCAGAACATTAGGAAGCTTGTGAAG 180
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 AATGAATCGGGCGATATCTCTATGGCCAATTCCAGGCAGAACATTAGGAAGCTTGTGAAG 195
Query 181 GATGGTTTCATTATCAGGAAGCCTACCAAGATCCACTCACGTTCTCGTGCCAGGGCTTTG 240
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 196 GATGGTTTCATTATCAGGAAGCCTACTAAGATCCACTCACGTTCTCGGGCTAGGGCTTTG 255
Query 241 AACGAGGCCAAGCGAAAGGGTCGTCACTCTGGATACGGTAAGAGAAAGGGTACAAGAGAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 AACGAGGCCAAGCGAAAGGGTCGTCACTCTGGATACGGTAAGAGAAAGGGTACAAGAGAG 315
Query 301 GCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAATGAGGGTGTTGAGGCGTTTCTTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAATGAGGGTGTTGAGGCGTTTCTTG 375
Query 361 AGCAAGTACCGTGAGTCAAAGAAGATTGATAGGCACATGTACCATGACATGTACATGAAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AGCAAGTACCGTGAGTCAAAGAAGATTGATAGGCACATGTACCATGACATGTACATGAAA 435
Query 421 GTGAAGGGTAATGTGTTCAAGAACAAGCGTGTGCTTATGGAGAGTATCCACAAGATGAAG 480
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 436 GTGAAGGGTAATGTTTTCAAGAACAAGCGTGTGCTTATGGAGAGCATCCACAAGATGAAG 495
Query 481 GCTGAGAAGGCCAGAGAGAAGACACTCTCTGACCAATTTGAGGCTAAGCGTATTAAGAAC 540
||||||||||| ||||||||||| ||| ||||||| |||||||| |||||||||||||||
Sbjct 496 GCTGAGAAGGCTAGAGAGAAGACTCTCGCTGACCAGTTTGAGGCCAAGCGTATTAAGAAC 555
Query 541 AAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAGAGAGGAGAGATTAGCTCAGGGACCTGGA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 AAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAGAGAGGAGAGATTAGCTCAGGGACCTGGA 615
Query 601 GGTGGAGAGACAACAACTCCTGCTGCTGCGCCAGCACCTCAACAAGCAGAGGTAACGAAG 660
|||||||||||||| |||||||||| |||| | | | ||||||| |||||||||| |||
Sbjct 616 GGTGGAGAGACAACGACTCCTGCTG--GCGC-A-C-C-TCAACAACCAGAGGTAACCAAG 669
Query 661 AAGAAGTCGAAGAAGTGATTTGGT-TCTGAACTTTTTTGCGATTGAATCTT-GAGTTTAC 718
|||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||
Sbjct 670 AAGAAGTCGAAGAAGTGATTTGGTGT-TGAACTTTTTTGCAATTGAATCTTTGAGTTTAC 728
Query 719 CTGTAGAAGAAGCGTCTTTT----ATCCTA-A-ATGATTTTGTCGGAGATTCTTTTCTTC 772
|||||||||||||||||||| ||| | | |||||||||||||||||||||||||||
Sbjct 729 CTGTAGAAGAAGCGTCTTTTTTTTATCTTTTATATGATTTTGTCGGAGATTCTTTTCTTC 788
Query 773 AAAAATATTTCTTATGTTATGGATCTCACATTGCTTATTATGAATTTATCAGTTTTGTTT 832
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 789 AAAAATATTTCTTATGTTATGGATCTCA--TTGCTTATTATGAATTTCTCAGTTTTGTTT 846
Query 833 CT 834
||
Sbjct 847 CT 848
> AT1G02780.1 | Symbols: emb2386 | Ribosomal protein L19e family
protein | chr1:607808-609465 REVERSE LENGTH=1031
Length=1031
Score = 466 bits (252), Expect = 2e-130
Identities = 461/561 (82%), Gaps = 18/561 (3%)
Strand=Plus/Plus
Query 42 AATGGTGTCGCTGAAGCTCCAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAGGG 101
|||||| || ||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 74 AATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTGATGAAGTGCGGGAAGGG 133
Query 102 AAAAGTTTGGCTCGATCCCAATG-AATCTGGCGATATTTCTATGGCCAATTCCAGGCAGA 160
|||||||||||||||||||| | || || ||| || || |||||||||||| | || |
Sbjct 134 CAAAGTTTGGCTCGATCCCAACGAAAGCT-CCGACATCTCCATGGCCAATTCCCGCCAAA 192
Query 161 ACATTAGGAAGCTTGTGAAGGATGGTTTCATTATCAGGAAGCCTACCAAGATCCACTCAC 220
|||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 193 ACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCAAGATTCACTCTC 252
Query 221 GTTCTC-GTGC-CAGGGCTTTGAACGA-GGCCAAG-CGAAAGGGTCGTCACTCTGGATAC 276
|||| | | || | | |||| || |||||| | |||||||||||||||||||||
Sbjct 253 GTTC-CAGAGCTC-GCAAAATGAA-GATTGCCAAGATG-AAGGGTCGTCACTCTGGATAC 308
Query 277 GGTAAGAGAAAGGGTACAAGAGAGGCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGA 336
|||||||| |||||||| | || || ||| | ||||| ||| | || |||||| | ||
Sbjct 309 GGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGTAGG 368
Query 337 ATGAGGGTG-TTGAGGCGTTTCTTGA-GCAAGTACCGTGAGTCAAAGAAGATTGATAGGC 394
||| | || || |||||| | |||| | || ||| | ||| | ||||||||||| | ||
Sbjct 369 ATGCGTGTTCTT-AGGCGTCTGTTGAAGAAA-TACAGAGAGACGAAGAAGATTGACAAGC 426
Query 395 ACATGTACCATGACATGTACATGAAAGTGAAGGGTAATGTGTTCAAGAACAAGCGTGTGC 454
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 427 ACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGT-C 485
Query 455 TT-ATGGAGAGTATCCACAAGATGAA-GGCTGAGAAGGCCAGAGAGAAGACACTCTCTGA 512
|| |||||||||||||||||| | || |||||||||||| || |||||||| || |||||
Sbjct 486 TTGATGGAGAGTATCCACAAG-TCAAAGGCTGAGAAGGCTAGGGAGAAGACTCTGTCTGA 544
Query 513 CCAATTTGAGGCTAAGCGTATTAAGAACAAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAG 572
|| |||||||||||| | ||||||||||||||| | || || ||| ||| || ||
Sbjct 545 TCAGTTTGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTAGGAG 604
Query 573 AGAGGAGAGATTAGCTCAGGG 593
||||||| | |||||| ||||
Sbjct 605 AGAGGAGCGTTTAGCTAAGGG 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5