BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479143 Length=834 Score E Sequences producing significant alignments: (Bits) Value AT3G16780.1 | Symbols: | Ribosomal protein L19e family protein... 1306 0.0 AT1G02780.1 | Symbols: emb2386 | Ribosomal protein L19e family ... 466 2e-130 > AT3G16780.1 | Symbols: | Ribosomal protein L19e family protein | chr3:5708925-5710579 FORWARD LENGTH=1017 Length=1017 Score = 1306 bits (707), Expect = 0.0 Identities = 800/842 (95%), Gaps = 17/842 (2%) Strand=Plus/Plus Query 1 AACGCAGAGAGGCGGAGAGGAGAAGGAAGACGGTGAGAAGCAATGGTGTCGCTGAAGCTC 60 |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||| || Sbjct 16 AACGGAGAGAGGCGGAGAGGAGAAGGAAGACGGCGTGAAGCAATGGTGTCGCTGAAGATC 75 Query 61 CAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAGGGAAAAGTTTGGCTCGATCCC 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 76 CAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAAGGAAAAGTTTGGCTCGACCCC 135 Query 121 AATGAATCTGGCGATATTTCTATGGCCAATTCCAGGCAGAACATTAGGAAGCTTGTGAAG 180 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 136 AATGAATCGGGCGATATCTCTATGGCCAATTCCAGGCAGAACATTAGGAAGCTTGTGAAG 195 Query 181 GATGGTTTCATTATCAGGAAGCCTACCAAGATCCACTCACGTTCTCGTGCCAGGGCTTTG 240 |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| Sbjct 196 GATGGTTTCATTATCAGGAAGCCTACTAAGATCCACTCACGTTCTCGGGCTAGGGCTTTG 255 Query 241 AACGAGGCCAAGCGAAAGGGTCGTCACTCTGGATACGGTAAGAGAAAGGGTACAAGAGAG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 256 AACGAGGCCAAGCGAAAGGGTCGTCACTCTGGATACGGTAAGAGAAAGGGTACAAGAGAG 315 Query 301 GCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAATGAGGGTGTTGAGGCGTTTCTTG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 GCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGAATGAGGGTGTTGAGGCGTTTCTTG 375 Query 361 AGCAAGTACCGTGAGTCAAAGAAGATTGATAGGCACATGTACCATGACATGTACATGAAA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 AGCAAGTACCGTGAGTCAAAGAAGATTGATAGGCACATGTACCATGACATGTACATGAAA 435 Query 421 GTGAAGGGTAATGTGTTCAAGAACAAGCGTGTGCTTATGGAGAGTATCCACAAGATGAAG 480 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 436 GTGAAGGGTAATGTTTTCAAGAACAAGCGTGTGCTTATGGAGAGCATCCACAAGATGAAG 495 Query 481 GCTGAGAAGGCCAGAGAGAAGACACTCTCTGACCAATTTGAGGCTAAGCGTATTAAGAAC 540 ||||||||||| ||||||||||| ||| ||||||| |||||||| ||||||||||||||| Sbjct 496 GCTGAGAAGGCTAGAGAGAAGACTCTCGCTGACCAGTTTGAGGCCAAGCGTATTAAGAAC 555 Query 541 AAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAGAGAGGAGAGATTAGCTCAGGGACCTGGA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 556 AAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAGAGAGGAGAGATTAGCTCAGGGACCTGGA 615 Query 601 GGTGGAGAGACAACAACTCCTGCTGCTGCGCCAGCACCTCAACAAGCAGAGGTAACGAAG 660 |||||||||||||| |||||||||| |||| | | | ||||||| |||||||||| ||| Sbjct 616 GGTGGAGAGACAACGACTCCTGCTG--GCGC-A-C-C-TCAACAACCAGAGGTAACCAAG 669 Query 661 AAGAAGTCGAAGAAGTGATTTGGT-TCTGAACTTTTTTGCGATTGAATCTT-GAGTTTAC 718 |||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||| Sbjct 670 AAGAAGTCGAAGAAGTGATTTGGTGT-TGAACTTTTTTGCAATTGAATCTTTGAGTTTAC 728 Query 719 CTGTAGAAGAAGCGTCTTTT----ATCCTA-A-ATGATTTTGTCGGAGATTCTTTTCTTC 772 |||||||||||||||||||| ||| | | ||||||||||||||||||||||||||| Sbjct 729 CTGTAGAAGAAGCGTCTTTTTTTTATCTTTTATATGATTTTGTCGGAGATTCTTTTCTTC 788 Query 773 AAAAATATTTCTTATGTTATGGATCTCACATTGCTTATTATGAATTTATCAGTTTTGTTT 832 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 789 AAAAATATTTCTTATGTTATGGATCTCA--TTGCTTATTATGAATTTCTCAGTTTTGTTT 846 Query 833 CT 834 || Sbjct 847 CT 848 > AT1G02780.1 | Symbols: emb2386 | Ribosomal protein L19e family protein | chr1:607808-609465 REVERSE LENGTH=1031 Length=1031 Score = 466 bits (252), Expect = 2e-130 Identities = 461/561 (82%), Gaps = 18/561 (3%) Strand=Plus/Plus Query 42 AATGGTGTCGCTGAAGCTCCAGAAGCGGCTCGCCGCATCCGTAATGAAATGCGGGAAGGG 101 |||||| || ||||||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 74 AATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTGATGAAGTGCGGGAAGGG 133 Query 102 AAAAGTTTGGCTCGATCCCAATG-AATCTGGCGATATTTCTATGGCCAATTCCAGGCAGA 160 |||||||||||||||||||| | || || ||| || || |||||||||||| | || | Sbjct 134 CAAAGTTTGGCTCGATCCCAACGAAAGCT-CCGACATCTCCATGGCCAATTCCCGCCAAA 192 Query 161 ACATTAGGAAGCTTGTGAAGGATGGTTTCATTATCAGGAAGCCTACCAAGATCCACTCAC 220 |||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| | Sbjct 193 ACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCAAGATTCACTCTC 252 Query 221 GTTCTC-GTGC-CAGGGCTTTGAACGA-GGCCAAG-CGAAAGGGTCGTCACTCTGGATAC 276 |||| | | || | | |||| || |||||| | ||||||||||||||||||||| Sbjct 253 GTTC-CAGAGCTC-GCAAAATGAA-GATTGCCAAGATG-AAGGGTCGTCACTCTGGATAC 308 Query 277 GGTAAGAGAAAGGGTACAAGAGAGGCAAGGCTACCAACCAAGATTCTTTGGATGAGGAGA 336 |||||||| |||||||| | || || ||| | ||||| ||| | || |||||| | || Sbjct 309 GGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGTAGG 368 Query 337 ATGAGGGTG-TTGAGGCGTTTCTTGA-GCAAGTACCGTGAGTCAAAGAAGATTGATAGGC 394 ||| | || || |||||| | |||| | || ||| | ||| | ||||||||||| | || Sbjct 369 ATGCGTGTTCTT-AGGCGTCTGTTGAAGAAA-TACAGAGAGACGAAGAAGATTGACAAGC 426 Query 395 ACATGTACCATGACATGTACATGAAAGTGAAGGGTAATGTGTTCAAGAACAAGCGTGTGC 454 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | Sbjct 427 ACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGT-C 485 Query 455 TT-ATGGAGAGTATCCACAAGATGAA-GGCTGAGAAGGCCAGAGAGAAGACACTCTCTGA 512 || |||||||||||||||||| | || |||||||||||| || |||||||| || ||||| Sbjct 486 TTGATGGAGAGTATCCACAAG-TCAAAGGCTGAGAAGGCTAGGGAGAAGACTCTGTCTGA 544 Query 513 CCAATTTGAGGCTAAGCGTATTAAGAACAAGGCTAGCAGGGAGAGAAAGTTTGCCAGAAG 572 || |||||||||||| | ||||||||||||||| | || || ||| ||| || || Sbjct 545 TCAGTTTGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTAGGAG 604 Query 573 AGAGGAGAGATTAGCTCAGGG 593 ||||||| | |||||| |||| Sbjct 605 AGAGGAGCGTTTAGCTAAGGG 625 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40639424923 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5