BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479155

Length=716
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16870.1 | Symbols: GATA17 | GATA transcription factor 17 | ...   527    6e-149


> AT3G16870.1 | Symbols: GATA17 | GATA transcription factor 17 
| chr3:5763586-5764654 REVERSE LENGTH=817
Length=817

 Score =  527 bits (285),  Expect = 6e-149
 Identities = 384/428 (90%), Gaps = 22/428 (5%)
 Strand=Plus/Plus

Query  1    tctctctctctctTCCTTATCATCAACAAACTTGCTCTGCTCCGA--TC----------A  48
            |||||||| ||||||||||||||| | ||||||||||||||||||  ||          |
Sbjct  18   TCTCTCTCCCTCTTCCTTATCATC-A-AAACTTGCTCTGCTCCGATCTCTTAAAAAAAAA  75

Query  49   AAGATGTCTGAGGGATCAGAAGAAACGAAAACAAAGGTCGACTCTGCCGGAGAGTTATCA  108
            ||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||
Sbjct  76   AAGATGTCTGAGGGATCAGAAGATACGAAAACAAAACTCGACTCTGCCGGAGAGTTATCA  135

Query  109  GATGTTGATAACGAGAACTGCAGTAGCAGCGGAAGTGGCGGTGGTAGT--T-CTGGTGAT  165
            ||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||
Sbjct  136  GATGTTGATAACGAGAACTGCAGTAGCAGCGGAAGTGGCGGTGGTAGTAGTTCTGGTGAT  195

Query  166  ACCAAGAGAACTTGCGTCGATTGCGGAACTATCCGAACTCCTCTTTGGCGTGGTGGCCCT  225
            ||||| || |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  196  ACCAAAAGGACTTGCGTTGATTGCGGAACTATCCGAACTCCTCTTTGGCGTGGTGGTCCT  255

Query  226  GCCGGACCAAAGTCATTGTGCAATGCTTGTGGGATCAAGAGTAGGAAGAAGAGACAAGCT  285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  256  GCCGGACCAAAGTCATTGTGCAATGCTTGTGGGATCAAGAGTAGGAAGAAGAGACAAGCA  315

Query  286  GCTCTTGGAATGAGATCAGATGAGAAGAAGAAAAACAGAAAAAGCA---GCGGTAATGAT  342
            || ||||| ||||||||||| ||||||||||| |||||||||||||   ||  |||||||
Sbjct  316  GCACTTGGTATGAGATCAGAGGAGAAGAAGAAGAACAGAAAAAGCAATTGCAATAATGAT  375

Query  343  CTAAACCTCGATCATCGAAACGCTaagaaca-acaagatcaacaaagatgatgatgccaa  401
            ||||||||||| ||||||||||| ||||| | |||| ||||||| || |||||||| |||
Sbjct  376  CTAAACCTCGACCATCGAAACGCCAAGAA-ATACAAAATCAACATAGTTGATGATGGCAA  434

Query  402  gaacgaca  409
            || |||||
Sbjct  435  GATCGACA  442


 Score =  268 bits (145),  Expect = 4e-71
 Identities = 172/184 (93%), Gaps = 5/184 (3%)
 Strand=Plus/Plus

Query  485  CGGTTGAGAAGAAGAGGTTATGGAGGAAACTCGGTGAGGAAGAAAGAGCTGCTGTGCTTC  544
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  557  CGGTTGAGAAGAAGAGGTTATGGAGAAAACTCGGTGAGGAAGAAAGAGCTGCTGTGCTTC  616

Query  545  TTATGGCGCTCTCTTGTAGCTCTGTTTACGCCTAAGTGTTTCTCTGTATTAGGGAATAAT  604
            | ||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct  617  TCATGGCTCTCTCTTGTAGCTCTGTTTACGCCTAAGTGTTTCTCTGTATTAGGTCATAAT  676

Query  605  TAAGTGAGAGCGATTTTGATTAACTTAATTAGATAGAGAGA-TATGTATGATATGAATGT  663
             |||||||||||||||||||||||||||||||||||||| | ||||||  ||  ||||||
Sbjct  677  CAAGTGAGAGCGATTTTGATTAACTTAATTAGATAGAGATAATATGTA--AT--GAATGT  732

Query  664  GTAA  667
            ||||
Sbjct  733  GTAA  736



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34711795577


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5