BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479156
Length=1962
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain p... 2898 0.0
> AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain
protein 40 | chr3:5768401-5770380 REVERSE LENGTH=1980
Length=1980
Score = 2898 bits (1569), Expect = 0.0
Identities = 1847/1981 (93%), Gaps = 20/1981 (1%)
Strand=Plus/Plus
Query 1 ATGAGAGGCTTTGCTTCTTCAGCATCTAGAATAGCGACGGCGGCAGCAGC-T-----TC- 53
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 ATGAGAGGCTTTGCTTCTTCAGCATCTAGAATAGCGACGGCGGCAGCAGCTTCCAAATCA 60
Query 54 C-AAA-G------C--CC-TAAACCCTAACCTCTCAAAAACCCTAAATTCCTCAGGTAAA 102
| ||| | | || |||||||||| ||||||||||||||||| || |||||||||
Sbjct 61 CTAAACGCTTCCACATCCGTAAACCCTAAGCTCTCAAAAACCCTAAACTCTTCAGGTAAA 120
Query 103 CCCACCAGTCCTCTGAACCAGCGTTACATTTCGCAAGTCATAGAGAGAAAAGATTGGTTT 162
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCACCAATCCTCTGAACCAGCGTTACATTTCGCAAGTCATAGAGAGAAAAGATTGGTTT 180
Query 163 TTGATACTGAATCAAGAATTCACCACTCATCGAATTGGTTTAAACACTCGATTCGTCATC 222
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 181 TTGATACTGAATCAAGAATTCACCACTCATCGAATTGGTCTCAACACTCGATTCGTCATC 240
Query 223 AGCGTTTTGCAGAATCAAGACAACCCATTACACTCCCTGCGATTTTACCTCTGGGTCTCC 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCGTTTTGCAGAATCAAGACAACCCATTACACTCCCTGCGATTTTACCTCTGGGTCTCC 300
Query 283 AACACCGACCCTGTTTACGCTAAGGATCAGTCTCTGAAGAGCGTTCTAGGGAACGCACTT 342
||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AACTTCGACCCGGTTTACGCTAAGGATCAGTCTCTGAAGAGTGTTCTAGGGAACGCACTT 360
Query 343 TTTCGTAAAGGCCCTTTATTGTTGTCTATGGAATTGCTTAAGGAGATTAGAGAATCAGGG 402
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 361 TTTCGTAAAGGCCCCTTATTGTTGTCTATGGAATTGCTTAAAGAGATTAGAGATTCAGGG 420
Query 403 TATCGAATTACTGATGAATTGATGTGTGTTTTGATCGGAAGCTGGGGAAGATTAGGTTTA 462
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TATCGGATTAGTGATGAATTGATGTGTGTTTTGATCGGAAGCTGGGGAAGATTAGGTTTA 480
Query 463 GCTAAGTATTGTAATGATCTTTTTGCTCAGATATCTTTTCTTGGAATGAAACCAAGTACA 522
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCTAAGTACTGTAATGATGTTTTTGCTCAGATATCTTTTCTTGGAATGAAACCAAGTACA 540
Query 523 AGGCTTTATAATGCTGTGATTGATGCGTTGGTGAAGTCTAATTCACTTGATTTGGCTTAC 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGGCTTTATAATGCTGTGATTGATGCGTTGGTGAAGTCTAATTCACTTGATTTGGCTTAC 600
Query 583 TTGAAGTTTCAGCAGATGCGTAGTGATGATTGTAAACCGGATCGTTTTACCTATAATATA 642
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 601 CTCAAGTTTCAGCAGATGCGTAGTGATGGCTGTAAACCGGATCGGTTTACCTATAATATA 660
Query 643 CTCATCCATGGTGTTTGCAAGAAGGGTGTGGTTGATGAGGCGATTCGATTGGTTAAACAG 702
|| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 661 CTTATACATGGTGTTTGCAAGAAGGGTGTGGTTGATGAAGCTATTCGATTGGTTAAACAG 720
Query 703 ATGGAACGAG-AAGGGAACAGACCTAATGTGTTCACTTATACGATTTTGATTGACGGGTT 761
||||||| || ||||||| ||||| ||||||||||| || ||||||||||| ||||||||
Sbjct 721 ATGGAAC-AGGAAGGGAATAGACCCAATGTGTTCACATACACGATTTTGATCGACGGGTT 779
Query 762 TTTGATCGCGGGGAGGATTGAGGAGGCATTGAAGCAATTGGAGATGATGCAGGCGAGAAA 821
|||||| || |||||| |||| ||||| |||||||||||||||||||||| || ||||||
Sbjct 780 TTTGATAGCAGGGAGGGTTGATGAGGCGTTGAAGCAATTGGAGATGATGCGGGTGAGAAA 839
Query 822 GTTGAATCCTAATGAAGCTACAATTAGAACTTTGGTTCATGGGATTTTTCGTTGCTTGCC 881
|||||||||||||||||||||||| |||||||| || || |||||||| |||||||||||
Sbjct 840 GTTGAATCCTAATGAAGCTACAATCAGAACTTTCGTACACGGGATTTTCCGTTGCTTGCC 899
Query 882 GCCGTGTGAAGCGTTTGAGGTTTTGCTTGGGTTTATGGAGAAAAACTCGATTTTGCAAAG 941
||||||| ||||||||||||||||| ||||||||||||||||| |||| | ||||||||
Sbjct 900 GCCGTGTAAAGCGTTTGAGGTTTTGGTTGGGTTTATGGAGAAAGACTCAAACTTGCAAAG 959
Query 942 AGTAGCTTATGATACTGTGTTGTATTGTCTTTCAAATAACTCAATGGCTAAAGAGACTGC 1001
||| | ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 960 AGTTGGTTACGATGCTGTGTTGTATTGTCTTTCAAACAACTCAATGGCTAAAGAGACTGG 1019
Query 1002 TCTTTTCTTGAGGAAAACGGGTGAGCGAGGTTATATTCCGGATAGCTCAACGTTCAATGC 1061
|| ||||||||||| | |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1020 TCAATTCTTGAGGAAGATAGGTGAGAGAGGTTATATTCCGGATAGCTCAACATTCAATGC 1079
Query 1062 TGCGATGAATTGTCTCTTAAAAGGGCATGATCTGGTTGAGACGTGTGGGATATTTGACGG 1121
|||||||| ||||||| |||||||||||||||| |||||||| ||| |||||||||||||
Sbjct 1080 TGCGATGAGTTGTCTCCTAAAAGGGCATGATCTTGTTGAGACTTGTAGGATATTTGACGG 1139
Query 1122 TTTTGTCAGTCGTGGAGTTAAGCCAGGATTTAACGGTTATCTTGTATTAGTTCAAGCTCT 1181
||||||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1140 TTTTGTCAGCCGTGGAGTTAAGCCAGGATTCAATGGTTATCTTGTGTTAGTTCAAGCTCT 1199
Query 1182 GTTGAATGCTCAGAGGTTCTCTGAAGGTGACCGGTATCTGAAACAACTGGGTGTTGATGG 1241
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1200 GTTGAATGCTCAGAGGTTCTCTGAAGGTGACCGGTATCTGAAACAAATGGGTGTTGACGG 1259
Query 1242 GCTTCTATCAAGTGTATATACTTATAATGCGGTTATTGACTGTCTCTGCAAGGCTCGTCG 1301
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 1260 GCTTCTATCAAGTGTATATAGTTATAATGCGGTAATTGACTGTCTCTGCAAGGCTCGACG 1319
Query 1302 GACAGAGCATGCAGCAATGTTCTTAACAGAGATGCAGGATAGAGGTATTTCTCCGAATCT 1361
| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CATAGAGAATGCAGCTATGTTCTTAACAGAGATGCAGGATAGAGGTATTTCTCCGAATCT 1379
Query 1362 CATAACTTTCAATACTTTTCTAAGCGGTTATAGCGCGGGGGGCGATGTAAAGAAGGTTCA 1421
| ||||||||||||| ||||| ||||||||||||| | |||| |||||||||||||||||
Sbjct 1380 CGTAACTTTCAATACCTTTCTGAGCGGTTATAGCGTGAGGGGTGATGTAAAGAAGGTTCA 1439
Query 1422 CGGCGTGCTAGAGAAGCTTCTTGAACATGGTTGCAAACCAGACGTGATCACTTTCAGTTT 1481
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1440 CGGCGTGCTAGAGAAGCTTCTTGTACATGGTTTCAAACCAGACGTGATCACTTTCAGTTT 1499
Query 1482 GATCATAAACTGTCTTTGCCGAGCAAAAGAAATCAAAGATGCATTTGACTGTTTCAAGGA 1541
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1500 GATCATAAACTGTCTTTGCAGAGCAAAAGAAATTAAAGATGCATTTGACTGTTTCAAGGA 1559
Query 1542 GATGTTGGAATGGGGGATTAAACCAAATGAGATCACATACAATATCCTGATTCGCTCCTC 1601
||||||||||||||| ||| | ||||| |||||||||||||||||| ||||||||||||
Sbjct 1560 GATGTTGGAATGGGGTATTGAGCCAAACGAGATCACATACAATATCTTGATTCGCTCCTG 1619
Query 1602 TTGTTCAACCGGAGATACCGGTAGATCAGTGAAGCTGTTTGCGAATATGAAGGAAAGCGG 1661
|||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 1620 TTGTTCCACCGGAGATACCGATAGATCAGTGAAGCTGTTTGCGAAGATGAAGGAAAACGG 1679
Query 1662 GTTAAGTCCAGACCTTTATGCCTACAATGCGATTATTCAGAGTTTTTGCAAGATGAAAAA 1721
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||
Sbjct 1680 GTTAAGTCCAGACCTTTATGCGTACAATGCGACTATTCAGAGTTTTTGCAAGATGAGAAA 1739
Query 1722 GGTTAAGAAGGCTGAGGAATTGCTTAAAACAATGTTGAGGATTGGTTTGAAACCAGATAA 1781
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1740 GGTTAAGAAGGCTGAGGAATTGCTTAAAACAATGCTGAGAATTGGTTTGAAACCAGATAA 1799
Query 1782 CTTTACATACAGCACTCTCATCAAAGCTCTAAGTGAATCTGGAAGAGAGAGTGAAGCGAG 1841
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1800 CTTTACATATAGCACTCTCATCAAAGCTCTAAGTGAATCTGGAAGAGAGAGTGAAGCAAG 1859
Query 1842 AGAGATGTTCAGTTCAGTGGAAAGACATGGATGTGTTCCGGATTCATATAGTAAGCGTCT 1901
|||||||||||||||| | |||||||||||||||||||| |||||||||| |||||||||
Sbjct 1860 AGAGATGTTCAGTTCAATCGAAAGACATGGATGTGTTCCAGATTCATATACTAAGCGTCT 1919
Query 1902 TGTTGAAGAACTTAACCTTAGACAAAGTGGACTCTCGAGAGAAACCGTGTCAGCCTCATA 1961
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1920 TGTTGAAGAACTTGACCTAAGAAAAAGTGGACTCTCGAGAGAAACCGTGTCAGCCTCATA 1979
Query 1962 G 1962
|
Sbjct 1980 G 1980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97188255120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5