BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479167
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16990.1 | Symbols: | Haem oxygenase-like, multi-helical | ... 1181 0.0
> AT3G16990.1 | Symbols: | Haem oxygenase-like, multi-helical
| chr3:5795834-5796850 REVERSE LENGTH=836
Length=836
Score = 1181 bits (639), Expect = 0.0
Identities = 742/792 (94%), Gaps = 6/792 (1%)
Strand=Plus/Plus
Query 1 AAAGGAAGAAGCAGCAATTTCAATGGAGAAGAGAGGAATGATCGACACGTGGATTGATAA 60
||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 46 AAAGGAAGAAGAAGCAATTTCAATGGAGAAGAGAGGGGTGATCGACACATGGATTGATAA 105
Query 61 GCACCGTTCGATCTATTCGGCGGCGACACGCCATGCTTTTGTCGTCTCGATCCGCGACGG 120
|||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 106 GCACCGTTCGATCTATACGGCGGCTACACGTCATGCTTTTGTCGTCTCGATCCGTGACGG 165
Query 121 ATCCGTCGATCTCTCGTCCTTCAGAACTTGGCTGGGGCAAGATTATCTGTTCGTGAGG-G 179
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 166 ATCCGTTGATCTCTCGTCCTTCAGAACTTGGCTGGGGCAAGATTATCTGTTCGTGAGGAG 225
Query 180 GATTTGTGCCGTTTGTAGCGAGTGTGCTGATCAGAGCTTGCAAAGATTCCGGCGAGAGTT 239
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 226 G-TTTGTGCCGTTTGTAGCGAGTGTGTTGATCAGAGCTTGCAAAGATTCCGGCGAGAGTT 284
Query 240 CCGATATGGAAGTGGTGCTTGGTGGTTTGGCGTCGTTGAATGACGAAATTGAATGGTTTA 299
|||||||||||||||||||||||||| | || ||||||||||| ||||| ||||||||||
Sbjct 285 CCGATATGGAAGTGGTGCTTGGTGGTATAGCATCGTTGAATGATGAAATAGAATGGTTTA 344
Query 300 AAAGAGAAGGAACGAAATGGGATGTGGATTTCTCCACTGTTGTGCCTCAAA-ATGCTAAT 358
||||||||||| ||||||||||||| |||||||| || ||||||||||||| | ||||||
Sbjct 345 AAAGAGAAGGATCGAAATGGGATGTTGATTTCTCGACCGTTGTGCCTCAAAGA-GCTAAT 403
Query 359 CAAGAATATCGCAGGTTTTTGGATGCTCTGATGAGCAGTGAGGTGAAGTATGCAGTGATT 418
||||||||| ||||||||||||| | ||||||||||||||||||||||||| | ||||||
Sbjct 404 CAAGAATATGGCAGGTTTTTGGAAGATCTGATGAGCAGTGAGGTGAAGTATCCGGTGATT 463
Query 419 ATGACAGCTTTCTGGGCAATTGAAGCAGTGTACCAAGAGAGTTTTGCTCATTGTTTAGAA 478
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 464 ATGACAGCTTTCTGGGCAATTGAAGCAGTGTATCAAGAGAGCTTTGCTCATTGTTTAGAA 523
Query 479 GACGGGAACAAAACTCCGGTGGAGCTTACCGGAGCTTGTCATCGGTGGGGCAATGACGGG 538
|||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 524 GACGGGAACAAAACTCCGGTGGAGCTTACCGGTGCTTGTCATCGTTGGGGGAATGACGGG 583
Query 539 TTTAAACAGTATTGCTCATCTGTCAAGAACATCGCCGAACGTTGCCTGGAGAATGCATCC 598
|||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 584 TTTAAACAGTATTGTTCGTCTGTCAAGAACATTGCCGAACGTTGTCTGGAGAATGCCTCC 643
Query 599 GGAGAGGTGCTCGTTGAAGCTGAAGATGTACTTGTACGAGTTCTTGAAC-ACGAGGTCGC 657
|| |||||||||| ||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 644 GGTGAGGTGCTCGGTGAAGCTGAAGATGTACTTGTACGAGTTCTTGAACTA-GAGGTTGC 702
Query 658 CTTCTGGGAGATGAGCCGTGGAGGACAGTAACTAATGTTTGGGTTTGAGTTTCTCATTTC 717
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 703 CTTCTGGGAGATGAGCCGTGGAGGACAGTAGCTAATGTTTGGGTTTGAATTTCTCATTTC 762
Query 718 CTCTAAATTCCAATGAGAAACAAGTTTCAATCTTTATGTTTGGTGAAAAACAAGTTGAGA 777
|||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 763 CTCTAAATGCCAAAGAGAAACAAGTTCCAATCTTTATGTTTGGTGAAACACAAGTTGAGA 822
Query 778 TTATGATTTCAT 789
||||| ||||||
Sbjct 823 TTATGGTTTCAT 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5