BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479168
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17000.1 | Symbols: UBC32 | ubiquitin-conjugating enzyme 32 ... 1696 0.0
> AT3G17000.1 | Symbols: UBC32 | ubiquitin-conjugating enzyme 32
| chr3:5797179-5799683 FORWARD LENGTH=1263
Length=1263
Score = 1696 bits (918), Expect = 0.0
Identities = 1125/1224 (92%), Gaps = 18/1224 (1%)
Strand=Plus/Plus
Query 1 TTTGTGTATTTATTATTTTCTGTTAAAGACGAATCGGGCCGAGCGGACTGCGGCGGCGAA 60
|||||||||||||||||||||||| |||||||||||| | ||| | ||| |||||||| |
Sbjct 23 TTTGTGTATTTATTATTTTCTGTT-AAGACGAATCGGACAGAGAGAACTCCGGCGGCGGA 81
Query 61 TTGCATTTCCGGCAAGATCTGGCGGGG----ATAAGATGGCGGATGAGAGGTATAACCGG 116
||||| |||||||||||||| | |||| ||||||||||||||||||||||||| |||
Sbjct 82 TTGCACTTCCGGCAAGATCTCGTGGGGATAAATAAGATGGCGGATGAGAGGTATAATCGG 141
Query 117 AAGAATCCGGCGGTGAAGAGGATTTTGCAGGAGGTTAAGGAGATGCAAGCAAATCCGTCT 176
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 142 AAGAATCCGGCGGTGAAGAGGATTTTGCAGGAGGTTAAGGAGATGCAAGCTAATCCGTCT 201
Query 177 GATGATTTTATGTCTCTTCCTCTTGAGGAGAATATCTTTGAGTGGCAATTCGCCATCCGA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GATGATTTTATGTCTCTTCCTCTTGAGGAGAATATCTTTGAGTGGCAATTCGCCATCCGA 261
Query 237 GGTCCAGGTGACACTGAATTCGAGGGCGGGATTTATCATGGGAGAATTCAGCTGCCTGCA 296
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 262 GGTCCTGGTGATACTGAATTCGAGGGCGGGATTTATCATGGGAGAATTCAGTTGCCTGCA 321
Query 297 GATTACCCTTTCAAACCTCCTTCATTCATGTTATTGACGCCTAATGGTCGCTTTGAAACC 356
||||| || ||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 322 GATTATCCATTCAAACCTCCTTCATTCATGTTATTGACCCCTAACGGGCGCTTTGAAACT 381
Query 357 AATACCAAGATTTGCTTGAGCATTTCAAATTACCACCCCGAGCATTGGCAACCTTCATGG 416
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 382 AACACCAAGATTTGCTTGAGCATTTCAAACTACCACCCTGAGCATTGGCAACCTTCATGG 441
Query 417 AGTGTTCGGACTGCTTTGGTGGCTCTGATTGCATTCATGCCCACAAGTCCCAATGGGGCA 476
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 442 AGTGTTCGGACTGCTTTGGTGGCTCTCATTGCATTTATGCCCACAAGTCCCAATGGAGCA 501
Query 477 CTGGGCTCAGTAGATTATCCAAAGGAGGAGAGACGTACACTAGCAATTAAATCTCGTGAG 536
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 502 CTGGGCTCAGTAGATTATCCAAAGGATGAGAGACGTACACTAGCCATTAAATCACGTGAG 561
Query 537 ACACCACCCAAGTATGGCTCTCCTGAACGGCAAAAAATTATTGATGAGATTCATCACTAC 596
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 562 ACACCACCTAAGTATGGCTCTCCTGAACGGCAAAAAATTATTGATGAGATTCATCAGTAC 621
Query 597 ATCCTTAGCAAAGCAACCATTGTTCCAAACCCTCTTCCTCTGGAATGTAACCAAACATCT 656
|||||||||||||||||| | |||||||| ||||||||||||||||||| |||| || ||
Sbjct 622 ATCCTTAGCAAAGCAACCGTGGTTCCAAAACCTCTTCCTCTGGAATGTAGCCAAGCACCT 681
Query 657 TCCACCATATCAGAGGCTCACTCCCAAGCTGAGCCACAGGAATCCATAACAGTAGTGGAG 716
|||| | ||||||| ||||||||||||| ||||||||||||| | ||||| ||||| ||
Sbjct 682 TCCATCGTATCAGAAGCTCACTCCCAAGTTGAGCCACAGGAAGCGATAACTGTAGTAGAA 741
Query 717 GAGCAGTCCATCTCTACAACAGAAACCATAGTTGATGATCAAATCATAGAAGAGACAGCT 776
|||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 742 GAGCGGTCCATCGCTACAACAGACACCATAGTTGATGATCAAATCATAGAAGAGACAGCT 801
Query 777 GAAGCAGTCAATACAGCAGCTAATGTGGTTCCCGCTGCAGCAGCGTTAACAGCAGTTGAA 836
|||||||||||||||||||||| ||||||||||||||||||| | ||| |||| ||||||
Sbjct 802 GAAGCAGTCAATACAGCAGCTAGTGTGGTTCCCGCTGCAGCACCTTTACCAGCGGTTGAA 861
Query 837 GTTGCAGCCAAAGCTTCTGTAAGTGGTGAGCAAACGATGGCCAGAAGAACGGCACAGAAG 896
|||| | |||||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct 862 GTTGTGGTCAAAGCTTCTGTAAGTGGTGAGCAAAGGATGGCCAGAAGAGCGGCTCAGAAG 921
Query 897 CCCGTCGATGACAGACTGTTTACGTGGGCGGCGGTTGGGCTCACAATCGCTATCGTAGTT 956
|| |||||||||||||| || ||||||||||||||||||||||||||||||||| | |||
Sbjct 922 CCAGTCGATGACAGACTCTTCACGTGGGCGGCGGTTGGGCTCACAATCGCTATCATGGTT 981
Query 957 CTTCTTCTGAAGAAGTTCATAAGATCAACTGGTTATGGTGCTGGGTTTATGGAT---CAG 1013
|||||||||||||||||||||| ||||| |||||| || |||||||||||||| |||
Sbjct 982 CTTCTTCTGAAGAAGTTCATAAAATCAAATGGTTACAGTACTGGGTTTATGGATGATCAG 1041
Query 1014 TCTTGAACTCTGATGATAGTCAATGCTGCTGCTATTGGGAAAATAGGGTTGTTTTGTTTA 1073
|||||||||||||||| |||||||||||| | | || |||| | ||||||| |||||||
Sbjct 1042 TCTTGAACTCTGATGAAAGTCAATGCTGC-G-T-TTAAGAAA-TGGGGTTGTGTTGTTTA 1097
Query 1074 ATATTT-ATAAATATGATTAAAGTGCATAATGGGGTAAATAATTG-TGTGTGACATTGTC 1131
|||||| |||||||| ||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1098 ATATTTTATAAATATAATTAAAGTGCATAATGGCGTAAATAATTTCTGTGTGACATTGTC 1157
Query 1132 TTGCAACTTAGTTGATAGATTC--T-ATAGCTTGTGACGAAGTTAACAATATGTATTTTG 1188
||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||
Sbjct 1158 TTGCAACTTAGTTGATAGATTGGATTATAGCTTGTGACCAAGTTAACAATATGTATTTTG 1217
Query 1189 GAATTAAACACTGACGACC-TTTT 1211
||||| ||||||||||||| ||||
Sbjct 1218 GAATTGAACACTGACGACCGTTTT 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59487645825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5