BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479171
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17030.1 | Symbols: | Nucleic acid-binding proteins superfa... 2342 0.0
> AT3G17030.1 | Symbols: | Nucleic acid-binding proteins superfamily
| chr3:5804509-5808462 REVERSE LENGTH=2007
Length=2007
Score = 2342 bits (1268), Expect = 0.0
Identities = 1377/1431 (96%), Gaps = 2/1431 (0%)
Strand=Plus/Plus
Query 1 ATGGGGGATTCAAACGGAGCATCGCTCATTGAAATTGATGACCAGGAAGAAGTAGAAGAT 60
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGGGGATACAAACGGAGCATCGCTCATTGAAATTGGTGACCAGGAAGAAGTAGAAGAT 60
Query 61 CCATTTCTGGCTTTCATCGACTACGCCAGAACTGTGATTTCACCGGAAGAAGACGAAGAT 120
||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CCATTTCTGGCTTTCCTGGACTACGCCAGAACTGTGATTTCACCGGAAGACGACGAAGAT 120
Query 121 GAGAAGGAAGAGAGCAAGAGGGATCCCAGCGAAGCCATGACTGAGAC-AGGTGGTCCGGG 179
|||||||||||||| ||||||| |||| ||||||||||||||||| | | ||||||||||
Sbjct 121 GAGAAGGAAGAGAGTAAGAGGGGTCCCGGCGAAGCCATGACTGAGGCTA-GTGGTCCGGG 179
Query 180 TTGGGGCTGGGTCGCCTCGCGTATTCTGAAAACCTGTACCGCTTATTCGAGCGGTGTCAC 239
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 180 TTGGGGCTGGGTCGCCTCGCGTATTCTGAAAACCTGTACTGCTTATTCTAGCGGTGTCAC 239
Query 240 TGCCGCGATTCTGTTGTCCGATCTCTCTCAGGCATGGCATGAGCAAAACAAACCAGGAAT 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGCCGCGATTCTCTTGTCCGATCTCTCTCAGGCATGGCATGAGCAAAACAAACCAGGAAT 299
Query 300 GTCAAAGAAGAAGCCGGAACTCATAGATCAGTTGAAGAAGAGTCACAGAAGAAGAAGACT 359
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 300 GTCAAAGAAGAAGCCGGAACTTATAGATCAGTTGAAGAAGGGTCACAGAAGAAGAAGACT 359
Query 360 CGCTAATACTGTCACAATAGACTCGATTTATGAGAAGAACTTTTTGTCCATGAACAGCGT 419
||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 CGCTAATACCGTTACAATTGACTCCATTTATGAGAAGAACTTTTTGTCCATGAACAGCGT 419
Query 420 TTTGGAAGCTGTTATTATCAATGCTGATGTTCTTCCTGGTACAAACATATTCATGCTTAC 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 TTTGGAAGCTGTTATTATCAATGCCGATGTTCTTCCTGGTACAAACATATTCATGCTTAC 479
Query 480 ACTAGGGGATTTTTGGAGCTCCAACACCATTGATCTCTATCTACATCGCAGGTATTATGA 539
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 ACTAGGGGACTTTTGGAGCTCCAACACCATTGATCTCTATCTACATCGGAGGTATTATGA 539
Query 540 GTTGGTGGAAACACCAAATGGGATTCTTCGGAAAGGCAGAGAGGTTTTGATCACTGGATG 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GTTGGTGGAAACACCAAATGGGATTCTTCGGAAAGGCAGAGAAGTTTTGATCACTGGATG 599
Query 600 CTACCTTCGTACCGCGAGAGAAGGATTCGGCACTCCACGGTTACTTCCAACAGAGTATCT 659
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 600 CTACCTTCGTACCGCGAGAGAAGGATTTGGCACTCCACGGTTACTTCCAACTGAGTATCT 659
Query 660 TGTCGTATTACTAGATGAGGACCAAGATGATGATGCAATCCTCATAGCAGCTCAATTTTG 719
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TGTCGTATTGCTAGATGAGGACCAAGATGATGATGCAATCCTCATAGCAGCTCAATTTTG 719
Query 720 TTCCGATACTTTCTCATCTGTTTCTCTTGATTCTTTCAACGATGGAACTTCATACTCTCT 779
||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||
Sbjct 720 TTCCGATACTTTCTCATCTGTTTCTCTTGATGCTTTCAACGATGGAGCTTCTTACTCTCT 779
Query 780 GTATGCTAGGATTGAATCTATAGGTCCTCTGGAATCTGAACTCACGTTTAGTACTGCACA 839
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTATGCTAGAATTGAATCTATAGGTCCTCTGGAATCTGAACTCACGTTTAGTACTGCACG 839
Query 840 TAGAAGGCAAATTTCACTTGTAGATGGTGATGGCGATAGGTTGAAATTTATCTTGTGGGG 899
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 840 TAGAAGGCAAATTTCACTTGTAGATGGTGATGGCGATAGGTTAAAATTTATCTTGTGGGG 899
Query 900 AGAGCAAGTCATTGTGGCAAACCTTCTAAGTGTGGGAAGCGTGCTTGGGCTTGAGAGGCC 959
||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 900 AGAGCAAGTCATTGTGGCAAACCTTCTGAGTGTGGGAAGTGTGCTTGGGATTGAGAGGCC 959
Query 960 TTATATTTCTAGTCTCGAAGAGAGTGCAATTGAAGGAAAGGATGAGTTCTGCCTTGAATA 1019
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 960 TTATATTTCTAGTCTCGAAGAGAGTGCAATGGAAGGAAATTATGAGTTCTGCCTTGAATA 1019
Query 1020 TGGTAGCGCAACACATCTCTATCTAGTGCCATCAACCTTACAAGAGGAACGGGTTTGTGT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CGGTAGCGCAACACATCTCTATCTAGTGCCATCAACCTTACAAGAGGAACGGGTTTGTGT 1079
Query 1080 AGCATTGTCACAACATCAGTGTCAAGGATCTAAACTGCTTGGTTTAGTCGGAGTTTCACA 1139
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1080 AGCGTTGTCACAACATCAGTGTCAAGGATCTAAACTGCTTGGTTCAGTCGGAGTTTCACA 1139
Query 1140 GGTGACATTGCCTCGTGACGCCGATGGGTCTATAGACTTCAGTAATTATCCTTTTCGGAC 1199
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1140 GGTGACATTGCCTCGTGATGCCGATGGGTCTGTAGACTTCAGTAATTATCCTTTTCGGAC 1199
Query 1200 GATAATAACGGACATTCGCGACAAAACCACTGGCATCAGTCTTTATGGGGTTGTCACAGA 1259
||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1200 GATGATAACGGACATTCGTGACAAAACGACTGGCATCAGTCTTTATGGGGTTGTAACAGA 1259
Query 1260 CATTTCATGTGATCCAAATGCAACAGGAGTGGTCTATTCTTTGAAGATTGAGGACACAAC 1319
|||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||
Sbjct 1260 CATTTCATGTGATCCAAACGCCACAGGAGTGGTCTTTTCTTTGAAGATCGAGGACACAAC 1319
Query 1320 TGGAGCAATATGGGCTAAGCTCCATTTTACCAATTACTGGTCGGTGGGAAGGTTAGGGCT 1379
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1320 TGGAGCAATATGGGCTAAGCTCCATTTTACCAATTACTGGTCGTTGGGAAGGTTAGGGCT 1379
Query 1380 TGGTCATGTCGTGTACGTGTCTGGGTTATCGTGCAAAATCACAAAAGAGAA 1430
|||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1380 TGGTCATGTCGTGTACGTGTCTGGGTTATCCTGCAAAATCACAAAAGAGAA 1430
Score = 568 bits (307), Expect = 1e-160
Identities = 389/426 (91%), Gaps = 16/426 (4%)
Strand=Plus/Plus
Query 1507 CTGGATAAGATCGACCAATGCCATAACATTAACACTAGATTAGCTCATAGCCTTTGCGGC 1566
|||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1591 CTGGATGAGATCGACCAATGCCATAACATCAACACTAGACTAGCTCATAGCCTTTGCGGC 1650
Query 1567 CATTTCATAGACGAAGAatcatcatcatcatcatcat-catc-atcaCTGCATTGTAGTT 1624
||||||||||| ||||||||||||||||| | | || | | | | |||||||||||||
Sbjct 1651 CATTTCATAGATGAAGAATCATCATCATC-T--T-ATGGAGCGAAC-CTGCATTGTAGTT 1705
Query 1625 TCTGCCGAGTAAGCTGCAACAGTAACACAGGATCAGAAGTAGTGAGAACATTCCACATAA 1684
||||||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct 1706 TCTGCCGAGTAAGCTGCAACAGT-A-AC---A-CAGAAGTAGTGAGAACATTCCACATAA 1759
Query 1685 CGATAACACTTGCAGACGAGGAAACCAAACTATACGCGTGGTGTACTGGTCAGTCCGCAG 1744
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1760 CGATAACACTTGCAGACGAGGAAACCAAACTATACGCGTGGTGTACTGGTCAGTCTGCAT 1819
Query 1745 CAGCTATACTTCAGATATCTCCTGATGAATTCTATGACCTCCCTGAGGATGATCGGCTAA 1804
||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 1820 CAGCTATACTTCAAATATCTCCTGATGAATTCTGTGACCTCCCAGAGGATGATCAGCTAA 1879
Query 1805 TGTATCCGTC---ATTGGAGAACGAGTGGTTTCTAGTGACCTTAGCAAACAGCGGTAGCC 1861
|||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1880 TGTATCCGTCTTCATTGGAGAACGAATGGTTTCTAGTGATTTTAGCAAACAGCGGTAGCC 1939
Query 1862 GGAATTCGGGTTCCGGTCATGAGACGGAGGCCACTTGCTGGGAAATCACACGCGCTCTCA 1921
|||||| ||||||||||||||| ||||| | ||||||||||||||||||||| |||||||
Sbjct 1940 GGAATTTGGGTTCCGGTCATGAAACGGACGACACTTGCTGGGAAATCACACGAGCTCTCA 1999
Query 1922 AGATTT 1927
||||||
Sbjct 2000 AGATTT 2005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95531637135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5