BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479173
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17060.1 | Symbols: | Pectin lyase-like superfamily protein... 2085 0.0
> AT3G17060.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:5816672-5818498 REVERSE LENGTH=1356
Length=1356
Score = 2085 bits (1129), Expect = 0.0
Identities = 1286/1361 (94%), Gaps = 13/1361 (1%)
Strand=Plus/Plus
Query 1 aaaagaaaactagaaaccccaagaaaaaaagaaagaaagaa-agaTGGATCATATAACAA 59
||||||||| ||||||||||||| |||||| ||| ||| || | |||| |||| |||||
Sbjct 1 AAAAGAAAAGTAGAAACCCCAAG-AAAAAATAAA-AAA-AATA-ATGGGTCATCGAACAA 56
Query 60 GAATGATCCTTGTCCTAACCCTAGTTGTAATGTCCGTATGGGGTTCGGACGCATCAGCAA 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 57 GAATGATCCTTGTCCTAACCCTAGTTGTAATGTCCATATGGGGTTCGGACGCATCAGCAA 116
Query 120 TGCAAAAGACGAAATTCGACGCACCGCTTCTAACTGAAAAAATCGCAACAAATAGATCGA 179
|||||||||||||||||||||| || ||| | |||||||||||||| |||||||||||||
Sbjct 117 TGCAAAAGACGAAATTCGACGCCCCACTTTTGACTGAAAAAATCGCGACAAATAGATCGA 176
Query 180 TAATTGTTGATATCGAAGGCAAAGGAGACTACACTTCGGTTCAAAAAGCCATCGATGCTG 239
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 177 TAATTGTAGATATCGAAGGCAAAGGAGACTACACTTCGGTTCAGAAAGCCATCGATGCTG 236
Query 240 TCCCTGTTGGTAACTCCAATTGGATCATCGTCCATGTCCGTAAAGGAATCTACAAGGAGA 299
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 237 TCCCTGTTGGTAACTCTAATTGGATTATTGTCCATGTCCGTAAAGGAATCTACAAGGAGA 296
Query 300 GGGTGCACATTCCGGAGAATAAGCCGTTCATATTCATGAGGGGTAATGGAAAAGGAAAGA 359
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 297 GAGTGCACATTCCGGAGAACAAGCCGTTCATATTCATGAGGGGTAATGGAAAAGGAAAAA 356
Query 360 CGGTGATCGAATCTTCGCAAAGTTCGGTTGACAATGTTGCTTCAGCCACTTTCAAAGTCG 419
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 357 CGGTGATCGAATCTTCGCAAAGTTCGGTCGACAATGTTGCTTCAGCTACTTTCAAAGTCG 416
Query 420 AAGCTAATCACTTTGTCGCTTTTGGTATCAGCATCAGAAATGATGCACCAATCGGAATGG 479
| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 417 AGGCTAATCACTTTGTCGCTTTTGGTATCAGCATCCGAAATGATGCACCTGTCGGAATGG 476
Query 480 CATTCACGTCGGAGAACCAATCGGTGGCAGCGTTTGTGGCTGCTGACAAAGTAGCATTTT 539
||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 477 CATTCACATCTGAGAACCAATCGGTGGCAGCGTTTGTGGCTGCTGACAAAGTAGCGTTTT 536
Query 540 ACCATTGTGCGTTCTACAGCTTACACAACACTTTGTTTGATAACAAAGGTAGACATTACT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACCATTGTGCGTTCTACAGCTTACACAACACTTTGTTTGATAACAAAGGTAGACATTACT 596
Query 600 ACCATGAGTGTTACATCCAAGGCTCCATCGACTTCATCTTCGGTCGCGCAACTTCCATTT 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 597 ACCATGAGTGTTACATCCAAGGCTCCATAGACTTCATCTTCGGTCGCGCAACTTCCATTT 656
Query 660 TCAACAATTGTGAGATATTTGTGATATCGGACAAGAGGGTGAAACCGTACGGATCAATCA 719
|||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 657 TCAACAATTGTGAGATATTTGTGATATCAGACAAGAGGGTGAAACCGTATGGGTCAATCA 716
Query 720 CAGCACACCATAGGGAAAACGCAGAGGAAAATACTGGTTACGTGTTCATAAGAGGCAAAG 779
|||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||
Sbjct 717 CAGCACACCATAGGGAAAGCGCAGAGGAAAAAACGGGTTACGTGTTCATAAGAGGCAAAG 776
Query 780 TGTACGGAATTGATGAGGTTTACTTGGGCCGAGCCAAAGGACCTTATTCCCGAGTCATCT 839
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 777 TGTACGGAATTGATGAGGTTTACTTGGGCCGAGCCAAAGGACCTTATTCTCGAGTCATCT 836
Query 840 TTGCCAAGACTTACTTGTCCAAGACCGTTGTGCCTGATGGTTGGACCAACTGGAGTTACC 899
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 837 TTGCCAAGACTTACTTGTCCAAGACCGTTGTGCCTGATGGTTGGACAAACTGGAGTTACC 896
Query 900 ACGGCTCAACCGAGAATTTATACCATGGGGAGTATAAATGTCATGGACCAGGAGCTGAGA 959
| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATGGCTCGACCCAGAATCTATACCATGGGGAGTATAAATGTCATGGACCAGGAGCTGAGA 956
Query 960 GGCAAAAAAGATCTGATTGGGCCAAAGAGCTAACTAAACAAGAAGTTGAGTCTTTCTTGT 1019
||||||| |||||||| ||||||||||| || || |||||||||||||||||||||||||
Sbjct 957 GGCAAAAGAGATCTGACTGGGCCAAAGATCTTACCAAACAAGAAGTTGAGTCTTTCTTGT 1016
Query 1020 CCATTGATTTTATTGATGGCACTTCTTGGCTCCCTGTTTGGCTTCAGCAAAAGTCTTAGA 1079
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1017 CCATTGATTTTATTGATGGCACTTCTTGGCTCCCTGTTTGGCTTCAGGAAAAGTTTTAGA 1076
Query 1080 ATTCCTTATGCTGTCGCGTTTGGCTTTTGGCATTTCGCGTTTTGGTGTGGCTTGGaaaaa 1139
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1077 GTTCCTTATGCTGTCGCGTTTGGCTTTTGACATTTCGCGTTTTGGTGTGGCTTGGAAAAA 1136
Query 1140 aaaaaCAACATACGAAGAAAGAAGAGTATTTCATCTTTTCTTCGACGGTATACTATACGA 1199
||| || || ||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1137 AAA--CAT-AT--GAAGAAAGAAGAGTACTTCATCCTTTCTTCGACGGTATACTATACGA 1191
Query 1200 AATAGTTTTCTCT-TAtttttttt-tGTACTTCTACTCTAAAATGTTCTTAGAGTGATTG 1257
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1192 AATAGTTTTCTCTCTTTTTTTTTTGTGTACTTCTACTCTAAAATGTTCTTAGAGTGATTG 1251
Query 1258 GAAACTCTTATGCTGTTTGCAAACATTATATAAGATGGTTTCCGTTTTAATAACATATGT 1317
|||||||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||||
Sbjct 1252 GAAACTCTTATGTTGTTTGCAAACATTATATAAGATTGTTTCCATCTTAATAATATATGT 1311
Query 1318 AACCTAAAGTTGAAATCATATAAATTAAAAATATTTTCCCG 1358
|||||||| || ||||| |||||||| ||||||||||||||
Sbjct 1312 AACCTAAATTT-AAATCCTATAAATTTAAAATATTTTCCCG 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66867125940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5