BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479178
Length=1505
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17090.1 | Symbols: | Protein phosphatase 2C family protein... 2377 0.0
> AT3G17090.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:5826803-5829633 FORWARD LENGTH=1642
Length=1642
Score = 2377 bits (1287), Expect = 0.0
Identities = 1438/1510 (95%), Gaps = 14/1510 (1%)
Strand=Plus/Plus
Query 1 ATCTTCCCTTCCATTAAGACCTAGGGTTTTCTCTCTCTCCCATCATTCTCTTCTCCCGAT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCATCCCTTCCATTAAGACCTAGGGTTTTCTCTCTCTCCCATCATTCTCTTCTCCCGAT 60
Query 61 CTCATTTCCATTACCCAATCCCGCTCCTTTATCTCTAATTTGTGAATCGAACCCTTAATA 120
|||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct 61 CTCATTTCCATTACCCAATCCCGCTCCTTT-TCTCTGATTT-TGAATCGAACCCTTAATA 118
Query 121 CCCAACAAATCTCACGGTTCCGAGGAGTGGGTTTT-GGGG-TTAGGGTTTTCGAGAGATG 178
|||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 119 CCCAG-AAATCTCACGGTTCCGAGGAGTGGGTTTTTGGGGGTTAGGGTTTTCGAGAGATG 177
Query 179 TTGAATGTCAGGTTCATTGATGAATCTGTTTTCTCTCTGCTTCAAGCCATTCGGGCACAT 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 178 TTGAATGTCAGGTTCATTGATGAATCTGTTTTCTCTCTGCTTCAAGCCATTCGGGCACGT 237
Query 239 CTGTGATAATTCCGAAGCTGGATCGGGTGGTGGTGGTGGCGTTTCTGGTGGAAGCGGTGG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 238 CTGTGATAATTCCGAAGCTGGATCGGGTGGTGGTGGTGGCGTTTCTGGTGGAACCGGCGG 297
Query 299 TGAAGGCAAAGACGGACTT-CTTTGGTTTCGTGATCTCGGTAAATATTGCGGCGGAGATT 357
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 298 TGAAGGCAAAGACGGA-TTGCTTTGGTTCCGTGATCTCGGTAAATATTGCGGCGGAGATT 356
Query 358 TCTCCATGGCTGTGATTCAAGCCAATCAGGTTCTTGAAGATCAGAGCCAGATCGAATCCG 417
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 357 TCTCCATGGCTGTGATTCAAGCCAATCAGGTTCTTGAAGATCAGAGCCAGGTCGAATCCG 416
Query 418 GTAATTTCGGGACTTTCGTTGGTGTTTACGATGGTCATGGTGGCCCTGAAGCTGCTCGTT 477
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 417 GTAATTTTGGGACTTTTGTTGGTGTTTACGATGGTCATGGTGGTCCTGAAGCTGCTCGTT 476
Query 478 ATGTCTGTGATCATCTCTTTAACCATTTTCGAGAAATATCAGCGGAGACGCAAGGAGTTG 537
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 477 ATGTCTGTGATCATCTCTTTAACCATTTTCGAGAAATATCAGCGGAAACACAAGGAGTTG 536
Query 538 TGACAAGAGAGACAATACAAAGAGCCTTTCATGCGACCGAAGAAGGATTTGCTTCCATTG 597
|||| |||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 537 TGACGAGAGAGACGATAGAAAGAGCCTTTCATGCGACAGAAGAAGGATTCGCTTCCATTG 596
Query 598 TGTCAGAGCTGTGGCAAGAAATACCAAATTTGGCAACTGTTGGCACTTGTTGTCTAGTTG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 597 TGTCAGAGCTGTGGCAAGAAATACCAAATTTGGCAACTGTTGGCACTTGTTGTTTGGTTG 656
Query 658 GAGTGATATATCAAAATACTCTTTTCGTGGCTAGCCTCGGAGATTCACGGGTTGTTCTTG 717
||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||
Sbjct 657 GAGTGATATATCAAAATACTCTTTTTGTGGCAAGTCTTGGAGATTCACGGGTTGTTCTTG 716
Query 718 GAAAGAAAGGCAACTGTGGCGGACTCTCTGCTATTCAGCTGTCGACTGAACACAATGCCA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 717 GAAAGAAAGGCAACTGTGGCGGACTCTCTGCTATTCAGCTGTCGACTGAACACAATGCTA 776
Query 778 ACAACGAGGATATTCGTTGGGAACTCAAGGACTTACATCCTGATGACCCACAGATCGTTG 837
|||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 777 ACAATGAAGATATTCGTTGGGAACTCAAGGACTTACATCCTGATGACCCGCAGATCGTTG 836
Query 838 TGTTCAGGCATGGAGTTTGGAGAGTTAAAGGCATCATTCAGGTTTCGAGGTCTATAGGAG 897
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 837 TGTTCAGGCATGGAGTTTGGAGAGTTAAGGGCATCATTCAGGTATCGAGGTCTATAGGAG 896
Query 898 ACATGTACATGAAACGGCCTGAATTTAACAAGGAGCCAATCAGTCAAAAGTTCAGACTTG 957
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 897 ACATGTACATGAAACGGCCCGAATTTAACAAGGAGCCAATCAGTCAAAAGTTCAGAATTG 956
Query 958 CAGAGCCAATGAAGAGACCATTGATGTCTGCAACACCGACCATACTTTCTCATCCTCTGC 1017
||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||||||||
Sbjct 957 CAGAGCCAATGAAAAGACCCTTGATGTCTGCAACACCAACAATACTCTCTCATCCTCTGC 1016
Query 1018 ATCCTAATGATTCGTTTCTCATTTTTGCGTCGGATGGTCTTTGGGAACATTTGACTAACG 1077
| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1017 ACCCTAATGATTCGTTTCTCATTTTTGCATCTGATGGTCTTTGGGAGCATTTGACTAACG 1076
Query 1078 AAAAAGCAGTTGAGATTGTTCATAACCATCCCCGTGCTGGAAGCGCAAAGAGACTGATAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AAAAAGCAGTTGAGATTGTTCATAACCATCCCCGTGCTGGAAGCGCAAAGAGACTGATAA 1136
Query 1138 AAGCTGCTCTTCACGAGGCAGCGAGGAAACGTGAGATGAGATATTCAGATCTAAGGAAGA 1197
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AGGCGGCTCTTCACGAGGCAGCGAGGAAACGTGAGATGAGATATTCAGATCTAAGGAAGA 1196
Query 1198 TTGACAAGAAAGTGAGACGCCATTTTCACGATGACATCACGGTTATAGTGGTGTTCTTGA 1257
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1197 TTGACAAGAAAGTGAGACGACATTTTCATGATGACATCACGGTTATAGTGGTGTTCTTGA 1256
Query 1258 ACCATGACCTCATATCCAGAGGCCACATCAACACAACCCAAGACACAACAGTCTCTATAC 1317
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1257 ACCATGACCTCATATCGAGAGGCCACATCAACTCAACCCAAGACACAACAGTCTCTATAC 1316
Query 1318 GGAGTGCTCTTGAACACTGAAAA-CCAAAAACATTTTACAACAATGTTTCTTATTACTTG 1376
|||||||||||||||||||| || || ||| ||||||||||||||||||||| |||||||
Sbjct 1317 GGAGTGCTCTTGAACACTGAGAATCCCAAA-CATTTTACAACAATGTTTCTTCTTACTTG 1375
Query 1377 GTTATATGACTTTTGCCTAGAATGAATAAAAGCTAGGCAACATATGGaaaaaaaaaaaca 1436
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1376 ATTATATGACTTTTGCCTAGAATGAATAAAAAAAAGGCAACATATGGAAAAAAC----CA 1431
Query 1437 aaaatgaaaaaa-CGACATCATTATCGTACGTAATGAGTTATCTCTTGTCTTAAGCGGCT 1495
|||||||||||| | ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1432 AAAATGAAAAAAACAACATCATTATCGTACGTAATGAGTTCTCTCTTGTATTAAGCGGCT 1491
Query 1496 ATGTTTGACT 1505
||||||||||
Sbjct 1492 ATGTTTGACT 1501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74246606055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5