BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479179
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17100.1 | Symbols: | sequence-specific DNA binding transcr... 1190 0.0
> AT3G17100.1 | Symbols: | sequence-specific DNA binding transcription
factors | chr3:5831253-5832419 FORWARD LENGTH=1167
Length=1167
Score = 1190 bits (644), Expect = 0.0
Identities = 869/970 (90%), Gaps = 46/970 (5%)
Strand=Plus/Plus
Query 151 TCTCCATCAGATCCTCGATTCCGATCCAACAGTTCGATTTCAGTTTCTGATTCTGATCTC 210
||| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 205 TCTACA-CAGATCCTCGATTCCGATCCAACAGTTCGAATTCAGTTTCCGATTCTGATCTG 263
Query 211 ATCGAACCAAAACTCGCTGAGATTTGATCGGC-------GA---T-TA--T---G----G 250
|||||||||| |||| |||||||||||||||| || | || | | |
Sbjct 264 ATCGAACCAATACTCACTGAGATTTGATCGGCGATTATGGAGTCTATATCTCCGGTATCG 323
Query 251 -ATCAGCTTCTTCA-TC--CGACGACGAGCTCTAGTTCCGATCGTTCTCGTCGTAAGCGG 306
||||||||||||| | ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 324 AATCAGCTTCTTCAGCCGACGACGACGAGCTCTAATTCCGATCGCTCTCGTCGTAAGCGT 383
Query 307 AAGAAGAAATCATCGCCGA-CGTCTCTTGATTCATCTCCGTCACCATCCACATCGTTGGA 365
||||||||||||||||| | | || |||| |||||| || || || | |||||||||
Sbjct 384 AAGAAGAAATCATCGCC-ATCATCGGTTGAGAAATCTCCATCTCCGTCAATATCGTTGGA 442
Query 366 GAAATGGAGATCGGAGAAGCAGCAACAGATCTACTCAACGAAGCTAGTTCGTGCTTTAAA 425
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 443 GAAATGGAGATCGGAGAAGCAGCAACAGATCTACTCAACGAAGCTAGTTCATGCTTTAAG 502
Query 426 AGAGCTTCGAATCAGTCAACAACCATCTTCGTCATCGTCGTCTTCGGTTCCACGCGGCGG 485
|||||| |||||||| |||||||||||||| ||||| || |||||| ||||||| || ||
Sbjct 503 AGAGCTACGAATCAGCCAACAACCATCTTCATCATCATCTTCTTCGATTCCACGTGGAGG 562
Query 486 TAGAGCTGTGCGTGAAGTCGCCGATAGAGCTTTAGCAGTTGCGGCGAGGGGTAAAACGTT 545
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 563 TAGAGCCGTACGTGAAGTCGCCGATAGAGCTTTAGCAGTTGCGGCGAGAGGTAAAACGTT 622
Query 546 ATGGAGTCGAGCGATACTATCGAAAGCCGTAAAACTCAAATTCAGGAAGCAGAAACGGCA 605
|||||||||||||||||| || ||||| |||||||||||||||||||| || ||||| ||
Sbjct 623 ATGGAGTCGAGCGATACTTTCAAAAGCTGTAAAACTCAAATTCAGGAAACACAAACGCCA 682
Query 606 GAGAATCTCCAATCCGGTGACGACGACGACGTTAACCACCGGGAGTATCAGGTCAAAGAA 665
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 GAGAATCTCTAATCC---GACGACGACGACGTTAACCACCGGGAGTATCAGGTCAAAGAA 739
Query 666 ACAGAGAGCGACGGTTTTGAGGCTTAAGGCTAAAGGTTTGCCAGCTGTACAGAGGAAAGT 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 ACAGAGAGCGACGGTTTTGAGGCTTAAGGCTAAAGGTTTGCCAGCTGTACAGAGGAAAGT 799
Query 726 GAAACTTCTGAGCCGGTTAGTTCCCGGTTGCCGTAAACAAACATTACCGGTGGTTTTAGA 785
|||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 800 GAAAGTACTGAGCCGGTTAGTTCCCGGTTGCCGTAAACAATCATTACCGGTGGTTTTAGA 859
Query 786 AGAAACTACTGATTATATAGCTGCCATGGAGATGCAGATTCGTACTATGACTGCGATTCT 845
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 860 AGAAACCACTGATTATATAGCTGCGATGGAGATGCAGATTCGTACTATGACTGCGATTCT 919
Query 846 CTCCGCCGTCAGTTCTTCTCCTCCGCCGCCGCCGCCAGGTCATGATGGGGGACAAACACA 905
||||||||| |||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 920 CTCCGCCGTTAGTTCTTCTCCTCCGCCGCCAACGCCAGGTCACGAAGGGGGACAAACACA 979
Query 906 CATGCTTGGTTAGTTGCCCAAACTGTCCTTTTAAtttttttC-A-TTT-aaaaa--aaaa 960
|||||||||||||||| |||||||||||||||| |||||||| | ||| ||||| ||||
Sbjct 980 CATGCTTGGTTAGTTGGCCAAACTGTCCTTTTA-TTTTTTTCCAATTTTAAAAACCAAAA 1038
Query 961 aaaa--CTGTTTTTC-----CAT-T-ATTATTCTTCTCACTGTATTGTTTGTTGTTTGAA 1011
|||| |||||||| ||| | ||||||||||||||||||||||||||||||||||
Sbjct 1039 AAAAAACTGTTTTTTTTTATCATATTATTATTCTTCTCACTGTATTGTTTGTTGTTTGAA 1098
Query 1012 TATTTTACTATTCAACTTTATTTACCATTTCATCATGTATATCCTTATTTTCTTGAATCT 1071
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1099 TATTTTACTATTCAACTTTATTTACCATTTCGTCATGTATATCCTT-TTTTCTTGAATCT 1157
Query 1072 CTCTGTTACC 1081
|||| |||||
Sbjct 1158 CTCTATTACC 1167
Score = 128 bits (69), Expect = 1e-28
Identities = 107/123 (87%), Gaps = 12/123 (10%)
Strand=Plus/Plus
Query 45 aaaataaaatttaaaa-aaaaaaaaaGAAAG-AGAAAGGATTCGTCTTCC-TCTTCCACA 101
||||||||| ||||| || || ||| ||| |||||||||||||||||| |||||||||
Sbjct 14 AAAATAAAA-ATAAAAGGAAGAAGAAG-AAGAAGAAAGGATTCGTCTTCCTTCTTCCACA 71
Query 102 CCCTTTCTGACACCTCATCTC---TCCCACCTTCTCCTCCGTCCCGTTCCGTT-CTCCAT 157
||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct 72 CCCTTTCTGACACCTCATCTCCCCTCCCACCTTCTCC---GTCCCGTTCCGTTTCTCCAT 128
Query 158 CAG 160
|||
Sbjct 129 CAG 131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5