BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479181
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17110.1 | Symbols: | pseudogene, glycine-rich protein | ch... 861 0.0
> AT3G17110.1 | Symbols: | pseudogene, glycine-rich protein |
chr3:5837842-5838701 FORWARD LENGTH=860
Length=860
Score = 861 bits (466), Expect = 0.0
Identities = 649/731 (89%), Gaps = 37/731 (5%)
Strand=Plus/Plus
Query 1 TTCTACACTACAAACGGCTTCTCTAGCTAGCTTCGTTTACTCTTAAAACTTTTACAAAAA 60
||||| | ||||||||||||||||||||||| || ||| || ||||||||| ||||| |
Sbjct 16 TTCTAAATTACAAACGGCTTCTCTAGCTAGC-TC-TTTTTTC-TAAAACTTTCACAAAGA 72
Query 61 ACGATCTCTTGATTTGTGGCTGAC--A------TTCTTAATAAAGAAGTTGT-AAACATG 111
|||||||||| ||||||||||||| | ||||||||||||||||||| || |||
Sbjct 73 ACGATCTCTTAATTTGTGGCTGACATAGCTTGGTTCTTAATAAAGAAGTTGTGGAA-ATG 131
Query 112 GGAAGCCTCCAGTTCTTAGGAGCTGCTTTCTTGGTTTTAGTAGTTTTTGACTTCTGTTTA 171
||||||||| ||| |||||||| ||||||||| |||||||| ||||||||| ||||||||
Sbjct 132 GGAAGCCTCAAGTACTTAGGAGTTGCTTTCTTTGTTTTAGTTGTTTTTGACGTCTGTTTA 191
Query 172 GCAGCTAGATCACCAAAAGCTCTTGGTAGAGGGTCCGGTTCAGGTTCAGGATATGGTTCA 231
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 192 GCAGCTAGATCACCAAAAGCTCTTGGTAGAGGGTCCGGTTCAGGTTCTGGATATGGTTCA 251
Query 232 GGCTCTGGGGGAGGCAACggtggaggtggtggtggaggaggaggaggaggaggaggagga 291
|||||||||||||| |||||||| || || ||||| || || ||||| ||||| || |||
Sbjct 252 GGCTCTGGGGGAGGTAACGGTGGTGGGGGAGGTGGTGGTGGCGGAGGGGGAGGCGGCGGA 311
Query 292 ggagggggtggt-g-ga-ggagaaggttcagggagtggttacgggtcagggtatgggtac 348
||||| |||||| | || ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 312 GGAGGTGGTGGTGGAGATGGATCAGGTTCAGGGAGTGGTTACGGGTCAGGGTATGGGTCC 371
Query 349 ggtagtggttatggaggaggaaacggtggaggtggaggtggaggtggaggtggcggtaga 408
|||||||||||||||||||||||| || ||||| ||||||||| | || ||| |||
Sbjct 372 GGTAGTGGTTATGGAGGAGGAAACAACGGTGGTGGCGGTGGAGGT-G-GG-GGC---AGA 425
Query 409 ggtggtggaggtggaggcggaaacggaggtTCCGGATACGGATCAGGTTATGGAAGCGGC 468
||||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 426 GGTGGTGGAGGAGGAGGCGGAAATGGAGGTTCCGGAAACGGGTCAGGTTATGGAAGCGGC 485
Query 469 TCTGGATATGGAA---------gt---ggtggtggt---ggaggtggtggtggaggagga 513
||||||||||||| || ||||||||| ||||| || ||||||||||||
Sbjct 486 TCTGGATATGGAAGTGGTGCTGGTAGAGGTGGTGGTGGGGGAGGCGGCGGTGGAGGAGGA 545
Query 514 ggaggtggtggtggtggtAGCCGCGGAAATGGATCCGGCTATGGAAGTGGATATGGTGAA 573
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GGAGGTGGTGGTGGAGGTAGCCGCGGAAATGGATCCGGCTATGGAAGTGGATATGGTGAA 605
Query 574 GGGTATGGAAGCGGATACGGTGGTGGAGATAATAACGGTGACTCACCCTAAATCATTCTT 633
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 606 GGGTATGGAAGCGGATACGGTGGTGGAGATAATTACGGTGACTCACCCTAAATCATTCTT 665
Query 634 ATTGCTTATTGTTGCATGATTCTGAACTTATGATAATAAGGTGTTCGATGTTTTGTGGTT 693
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 666 ATTGCTTATTGTTTCATGATTCTGAACTTATGATAATAATGTGTTCGATGTTTTGTCGTT 725
Query 694 ACATATATATA 704
|||||||||||
Sbjct 726 ACATATATATA 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5