BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479182
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17120.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2122 0.0
> AT3G17120.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G02380.1);
Has 67 Blast hits to 67 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:5841096-5843485
FORWARD LENGTH=1661
Length=1661
Score = 2122 bits (1149), Expect = 0.0
Identities = 1481/1629 (91%), Gaps = 71/1629 (4%)
Strand=Plus/Plus
Query 1 AAACGTATAAGAAAATAAAATAATGGGATCAAAGTGGAATAAAAGAATATTTGGGCGTCG 60
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 49 AAACGTATAAGAAAATAAAAGAATGGGATCAAAGTGGAATAAAAGAATATTAGGGCGTCG 108
Query 61 GTGACGTGAAGCGTCGCTGCT-GGAG-AAAAATCTCACATGCGTATTATCTCAGTCTCAG 118
|||||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 109 GTGACGTGAAGCTTCGCTGCTGGGAGAAAAAAGCTCACATGCGTATTATCTCAGTCTCAG 168
Query 119 CTATATTTAGAACAGCAACACATGTCCGAACACATTACAGTTCCTATATCTGTTTCGAAT 178
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 169 CTATATTTAGAACAACAACACATGTCTGAACACATTACAGTTCCTATATCTGTTTCGAAT 228
Query 179 TCAAATCTGCTGTCCtttttttcctttattaaaaatttctcttattaata-ttaat-aca 236
|||||||| |||||| ||||||| | || ||| || ||| | || |||| ||| | |
Sbjct 229 TCAAATCTCCTGTCC-TTTTTTCATATA-TAATAA-TTC-ATCATAAATATTTATTGATT 284
Query 237 taatt-t-tatc-t-tatata-tttCGATCTCTCCTGGaaaa-agaaaaaaGTTAGAAAC 290
| ||| | | || | |||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct 285 TGATTCTATCTCTTATATATATTTTCGATCTCTCCT-GAAAAGAGAAAAAAGTTGGAAAC 343
Query 291 TTCGACGAATGTGTGTATAAAtttttttttttCTTCTTCTTTGTCTTGAATTAGTTTTAT 350
|||||||||||||| |||||| | ||||| || ||| | | |||||||| ||||||||||
Sbjct 344 TTCGACGAATGTGTTTATAAA-TCTTTTTATT-TTC-TATCTGTCTTGATTTAGTTTTAT 400
Query 351 -TTCTTTGGAATCGGTCTGAAATTGGACAAAATAATCCGCCATTTTCTCCTCGGTCTCTC 409
|| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 401 CTTTTTTGGAATCGGTCTGAAGTTGGACAAAAGAATCCGCCATTTTCTCCTCGGTCTCTC 460
Query 410 TGCTCTTCTCTTCAGTATCGGATCTGGGTCTCCTTCGCTTTCGTTTCAAGGTTATTTTGG 469
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 461 TGCTCTTCTCTTCAGTATCGGATCTGGGTCTCCTTCGCTTTCGTTTCAAGATTATTTTGG 520
Query 470 GAGACGAGGAGGCGTTAGCTGTAATTCATTGTTTACTTGCTTTGGCTATTAAAGCCGT-- 527
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 521 GAGACGAGGAGGCGTTAGCTGTAATTCATTGTATACTTGCTTTGGCTATTAAAGCCGTCA 580
Query 528 CACaaaaaaaG--AAAGTAA-A-AGCA-AC-T---CACACAC-CTTTATTACGTATATGT 577
||||||||||| |||| || | | || || | | |||| |||| ||||||||||||
Sbjct 581 CACAAAAAAAGTAAAAGCAACACA-CACACATAAATAGACACACTTTTTTACGTATATGT 639
Query 578 GTGTCTTCTTTCGTCTCTATTGGGAATAGATCTTGTCCTAAGAGATCACTTCGAGTCTGA 637
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GTGTCTTCTTTCGTCTCTGTTGGGAATAGATCTTGTCCTAAGAGATCACTTCGAGTCTGA 699
Query 638 TCTAAAGTGAGAAACTTTGGTTCTT-TTTTGGTTCTTTGGAATCTTGTCTAATCTGGTGA 696
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct 700 TCTAAAGTGAGAAACTTTGGTTCTTGTTTTGGTT-TTTGGAATCTTGTCTAATCTGGGGA 758
Query 697 GATAGAATGGGAATGAGTCTCGATTTCGATGTTGATCTTGAGAAAGGAATCATAGATTGC 756
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GAT--AATGGGAATGAGTCTCGATTTCGATGTTGATCTTGAGAAAGGAATCATAGATTGC 816
Query 757 GACAATGTTTATACTAAATCACCGGAGAAGCCGATGTCTCCTGATAACAAACCGGTTATT 816
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 817 GACAATGTTTATACAAAATCACCGGAGAAGCCGATGTCTCCTGATAACAAACCGGTAATA 876
Query 817 ACCGGAGAAGAAAGTGTTGGTTCGTTAGAGAATGGTGCAAGTCCAGTTCAATGTGGAATC 876
|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct 877 ACCGGAGAAGAAAGTGTTGGTTCGTTAGAGAATGATACAAGTCCGGTTCAATGTGGAATC 936
Query 877 AATAAACCGGGATGGGGGAGAAGCGATCGGAAGGAGAAGCGAAAGAAATCTGCGTCGAAG 936
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 937 AATAAACCGGGATGGGGGAGAAGCGATCGGAAGGAGAAACGGAAGAAATCTGCGTCGAAG 996
Query 937 CCTCCACGACCGCCGCGTGGACCGTCGCTAGATGCGGCGGATCAGAAACTTATCAGAGAG 996
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 997 CCTCCTCGACCGCCGCGTGGACCGTCGCTAGACGCGGCGGATCAGAAACTTATTAGAGAG 1056
Query 997 ATCGCTGAATTGGCGATGTTGAAACGCGCGAGAGTCGAACGTATGAGAGCTTTGAAGAAA 1056
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1057 ATCGCTGAATTGGCGATGTTGAAACGCGCGAGAATCGAACGTATGAGAGCTTTGAAGAAA 1116
Query 1057 TCAAGAGCTGCTAAAGCTGCGTCTGCGGCTTCTTCTTTAGGCAATGTATTGGCCACTCTT 1116
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1117 TCAAGAGCGGCTAAAGCTGCGTCTGCCGCTTCTTCTTTAGGCAATGTATTGGCCACTCTT 1176
Query 1117 TTCACCGCTATTTTCTTCTTTGTCCTTGTTTTTCAAGGATTGTCACCGAGAGCAGCTGGT 1176
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1177 TTCACCGCTATTTTCTTCTTTGTCCTCGTTTTCCAAGGATTGTCACCGAGAGCAGCCGGT 1236
Query 1177 AGCTCCGGTAAATCTCACGTAGTAGTCGCCGGCAAAGCCAATGGTGGTTTTGTTCCGGTT 1236
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1237 AGCTCCGGGAAATCTCACTTAGTAGTCGCCGGCAAAGCCAATGGTGGTTTTGTTTCGGTT 1296
Query 1237 CAGTATGCAGGAAATCCGTCTGCGAGCGAACCGGATCGAGGTTATACCGGACCGGTTTTA 1296
|| ||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 1297 CAATATGCGGGAAATCCGTCGGCGAGCGAACCGGATGGAGGTTATACCGGACCAGTTTTA 1356
Query 1297 GCACAGAGACCAAATTTACTAAAACCGGTGTCCGGTTTGGAGAATGAAAAGAAGAGTTCA 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 GCACAGAGACCAAATTTACTAAAACCGGTGTCCGGTTTGGAGAATGAAAAGAAGAGTTCA 1416
Query 1357 CAGTGAA-G-GT-------T----AAGAATTGGACAGTTTCATACTGGTTTGATCAAACC 1403
||||||| | || | ||||||||||||||| |||||||||||| |||||||
Sbjct 1417 CAGTGAAAGCGTAACGAAATGGTTAAGAATTGGACAGTTCCATACTGGTTTGCTCAAACC 1476
Query 1404 ATTTATCGGTTTAGATTGTCGGTGAGCCATGTATTC-ATTCA-TACC-GAAGAAAAATCG 1460
|||||||||||||||||||||||||| |||||| | || | | | ||||| |||
Sbjct 1477 ATTTATCGGTTTAGATTGTCGGTGAGACATGTAC-CGATAAACTTTTTGG-GAAAA-TCG 1533
Query 1461 GCTGCTTTCTCTGCGGCTG-----C--T--TAT---CCGATGTGGGTAAGAAAGTAGTTT 1508
||||||||||||||||||| | | ||| ||||||||||||||||||||||||
Sbjct 1534 GCTGCTTTCTCTGCGGCTGTGAAACGATAATATTATCCGATGTGGGTAAGAAAGTAGTTT 1593
Query 1509 TGTGTT-GATTTTTCTTGAGTAAACTGAGATAAGTT-ACAAAATAAGAAAA-TCAGTGTT 1565
||||| | |||||||||| |||||||||| ||||| ||||| ||| |||| ||||||||
Sbjct 1594 TGTGTCAGTTTTTTCTTGAATAAACTGAGAGAAGTTTACAAA-TAATAAAAATCAGTGTT 1652
Query 1566 ATGTTATTC 1574
|| ||||||
Sbjct 1653 ATATTATTC 1661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77710443660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5