BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479186

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17150.1 | Symbols:  | Plant invertase/pectin methylesterase...   394    4e-109


> AT3G17150.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr3:5847258-5848195 FORWARD 
LENGTH=641
Length=641

 Score =  394 bits (213),  Expect = 4e-109
 Identities = 282/315 (90%), Gaps = 5/315 (2%)
 Strand=Plus/Plus

Query  3    GTCTCAACCAATTCGGTCTACTACGGGATCTAATAAGCTCATACAAGTACTCTGCAAAAG  62
            ||||||||||||||||| | |||| ||| |   ||||| |||||||| ||||||||||  
Sbjct  90   GTCTCAACCAATTCGGTATGCTAC-GGAAC--CTAAGCCCATACAAGAACTCTGCAAATT  146

Query  63   TAATATTTATCCCAGCCTCTGCGACTCTACTCTCAATCTTGATCCTAGAAGCAAGAATTC  122
            ||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct  147  TAACATTAATCCAAGCCTCTGCGTCTCTACTCTCAATCTTGATCCTAGAAGCAAGAACTC  206

Query  123  AAATCTACGAGGGCTTGCGCCGATCTCTATCGACGCGACTTCaaaaaaaGTCAACGAGTT  182
            |||| |||||| |||||||  |||||||||||| ||||||||||| ||||||||| |  |
Sbjct  207  AAATTTACGAGAGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAAT  266

Query  183  GTTAAATTATCTCATTTTCGTCTCTAAGAACATCAAAGACCGTGAAGACTTAAAGAAGTA  242
            |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  267  GTTAAACTATCTCATCTCCGTCTCTAAGAACATCAAAGACCGTGAAGACTTAAAGAAGTA  326

Query  243  TAAAACTTGCATTGATGAGTATGGCACGAG-GGCTCGTAGGTTTTTACCGGCGGCGTTGG  301
             ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct  327  CAAAACTTGCATTGATGACTATGGCACG-GCGGCTCGTAGGTTTTTACCGGCGGCGTTGG  385

Query  302  CTGATCTTAAAGCTG  316
             ||||||||||||||
Sbjct  386  ATGATCTTAAAGCTG  400


 Score =  263 bits (142),  Expect = 1e-69
 Identities = 182/200 (91%), Gaps = 8/200 (4%)
 Strand=Plus/Plus

Query  321  TGTTGTGTCGATACCTGATCATTGTGAGGCGCAATTCGCTGGAATTTCGCCGTTGACCGG  380
            ||||||||||||||| |||||||||||||||||||||| ||| | ||| |||||||| ||
Sbjct  435  TGTTGTGTCGATACCCGATCATTGTGAGGCGCAATTCGGTGGGAGTTCACCGTTGACGGG  494

Query  381  ACGTAACAAAGCCGTC-CATGATATCGCTTATATGACTGCTGACATCATCAA-ATATCTT  438
            |||||||||||||  | |||||||||||| ||||||||||||||||||| || |||||||
Sbjct  495  ACGTAACAAAGCC-ACTCATGATATCGCTAATATGACTGCTGACATCAT-AAGATATCTT  552

Query  439  TTTGTCAATAATTAATAAATTTTTAGTCTTGTTCAAAGTACAATCGAGTAACG-A-A-T-  494
            |||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | | 
Sbjct  553  TTTGGCAATAATTAATAAGTTTTTAGTCTTGTTCAAAGTACAATCGAGTAACGCATAATG  612

Query  495  AAGAATAAGATATTTATTTC  514
            ||||||||||||||||||||
Sbjct  613  AAGAATAAGATATTTATTTC  632



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24614732030


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5