BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479187
Length=589
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17152.1 | Symbols: | Plant invertase/pectin methylesterase... 883 0.0
AT3G17150.1 | Symbols: | Plant invertase/pectin methylesterase... 261 5e-69
> AT3G17152.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:5848787-5849614 FORWARD
LENGTH=623
Length=623
Score = 883 bits (478), Expect = 0.0
Identities = 556/593 (94%), Gaps = 7/593 (1%)
Strand=Plus/Plus
Query 1 CAAGATGAATAATTT-CATGA-ACTTATTCGCTGTTTTTGTCATGTTTATCCAAATCCAA 58
||| |||||| |||| ||| | ||||||||||| |||||||| || ||| ||||||||||
Sbjct 22 CAAAATGAAT-ATTTACAT-ATACTTATTCGCTATTTTTGTCGTGCTTAGCCAAATCCAA 79
Query 59 ATAGCCTTGTCTCAAGCAATTCAGTCTCCTCCGGGATCTAACCTTGTTCAACAACTCTGC 118
||||||||||| ||| |||||||||||||||||||||||| |||||| |||| |||||||
Sbjct 80 ATAGCCTTGTCACAAACAATTCAGTCTCCTCCGGGATCTAGCCTTGTACAACGACTCTGC 139
Query 119 AAAAGAAACCGTTATCAAGCCCTATGCATCTCTACTCTCAATCTTGATCCTAGAAGCAAA 178
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 140 AAAAGAAACCGTTACCAAGCCCTATGCATCTCTACTCTCAATGTTGATCCTAGAAGCAAA 199
Query 179 ACCTCAAATTTACAAGGGCTTGCGTCGATCTCTCTCGATGCTACGACAAAGAAATTCAAC 238
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 ACCTCAAATCTACAAGGGCTTGCGTCGATCTCTCTCGATGCTACGACAAAGAAATTCAAC 259
Query 239 GTGACGTTAACATATCT-TATCTCTGTCCTAAAGAATGTCACACGCCGTGAAGAATTTGA 297
||||||||||||||| | ||||||||||||||||||||||| | |||| | ||| |||||
Sbjct 260 GTGACGTTAACATAT-TATATCTCTGTCCTAAAGAATGTCAGAGGCCGCGTAGACTTTGA 318
Query 298 GACATACGGAACTTGCATCGAGGAGTACGGTGCGGCGGTTGATAGGTTTTTACCAGCGGT 357
|| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 319 GAGATACGGAACTTGCATCGAGGAGTATGGTGCGGCGGTTGATAGGTTTTTACCGGCGGT 378
Query 358 GGTGGCTGATCTAAAGGCGAAGAAATATTCTGAGGCTATGTCTGAAATGAAAGACGTTGT 417
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 379 GAAGGCTGATCTAAAGGCGAAGAAATATCCTGAGGCTATGTCTGAAATGAAAGACGTTGT 438
Query 418 GGCGAAGCCAGGTTATTGTGAGGACCAGTTCGCCGGGCAATCTCCGTTGACCGCACGTAA 477
||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 439 GGCGAAGCCAGGTTATTGTGAGGACCAGTTCGCCGGGGAATCTCCGGTGACGGCACGTAA 498
Query 478 CAAAGCCGTCCATGATATCGCCGATATGACTGCTGGCATCATCAAAACGTTGTGAAATAT 537
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 499 CAAAGCCGTCCATGATATCGCCGATATGACTGCTGACATCATCAAAACGTTGTGAAATGT 558
Query 538 CAACTAATTaaaaaaa-TTCAATGTTCAACGAGAAATGAATAAGATATTTTTA 589
|||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 559 CAACTAATTAAAAAAAATTCAATGTTCAACGAGAAATGAATAACATATTTTTA 611
> AT3G17150.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:5847258-5848195 FORWARD
LENGTH=641
Length=641
Score = 261 bits (141), Expect = 5e-69
Identities = 402/523 (77%), Gaps = 37/523 (7%)
Strand=Plus/Plus
Query 17 ATGAACTTATTCGCTGTTTTTGTCATGTTTATCCAAATCCAAATAGC-CT-T-GTCTCAA 73
||||| |||||| || |||||||| | ||||| ||||||||| |||| | | |||||||
Sbjct 37 ATGAAATTATTCTCTATTTTTGTCGTATTTATGCAAATCCAAGTAGCATTGTCGTCTCAA 96
Query 74 GCAATTCAGTCTCCTCCGGGATCTAA-CCTTGTTCAACAACTCTGCAAAAGAAACCGTT- 131
|||||| || | || ||| | |||| || | ||| ||||||||||| || | ||
Sbjct 97 CCAATTCGGTATGCTACGGAACCTAAGCC-CATACAAGAACTCTGCAAATTTAA-CATTA 154
Query 132 AT-CAAGCCCTATGCATCTCTACTCTCAATCTTGATCCTAGAAGCAA-AACCTCAAATTT 189
|| |||| ||| ||| ||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 155 ATCCAAG-CCTCTGCGTCTCTACTCTCAATCTTGATCCTAGAAGCAAGAAC-TCAAATTT 212
Query 190 ACAAGGGCTTGCGTCGATCTCTCTCGATGCTACGACAAAGAAATTCAACGTGACGTTAA- 248
|| || |||||||| ||||||| ||||||| || |||| ||| ||||| | |||||
Sbjct 213 ACGAGAGCTTGCGTGGATCTCTATCGATGCGACTTCAAACAAAGTCAACAAAATGTTAAA 272
Query 249 CATATCTTATCTCTGTC-CTAAAGAATGTCACACG-CCGTGAAGAATTTGAGACA-TACG 305
| ||||| ||||| ||| |||| ||| ||| | | ||||||||| || ||| | |||
Sbjct 273 C-TATCTCATCTCCGTCTCTAA-GAACATCAAA-GACCGTGAAGACTTAAAGA-AGTACA 328
Query 306 GAACTTGCATCGAGGAGTACGGTGCGGCGGTT-GATAGGTTTTTACCAGCGGTGGTGGCT 364
||||||||| || || || || |||||| | | |||||||||||| |||| | ||| |
Sbjct 329 AAACTTGCATTGATGACTATGGCACGGCGGCTCG-TAGGTTTTTACCGGCGGCGTTGGAT 387
Query 365 GATCT-AAAGGC-GAAGAAATATTCTG-AGGCTATGTCTGAAATG-AAAGACGTTGTGGC 420
||||| |||| | | | | |||| || | | |||||| ||| |||| |||||| |
Sbjct 388 GATCTTAAAG-CTGG-GTTCTTTTCTCTAG-CGAAGTCTGATATGGAAAGT-GTTGTGTC 443
Query 421 GA-AGCCAGGTTATTGTGAGGAC-CAGTTCGCCGGGCAAT-CTCCGTTGACCGCACGTAA 477
|| | || | | ||||||||| | || |||| ||| | | | |||||||| | ||||||
Sbjct 444 GATACCC-GATCATTGTGAGG-CGCAATTCGGTGGG-AGTTCACCGTTGACGGGACGTAA 500
Query 478 CAAAGCCG-TCCATGATATCGCCGATATGACTGCTGGCATCAT 519
||||||| || |||||||||| |||||||||||| ||||||
Sbjct 501 CAAAGCCACTC-ATGATATCGCTAATATGACTGCTGACATCAT 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28332058908
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5