BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479188
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17160.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1066 0.0
> AT3G17160.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
54259 Blast hits to 25265 proteins in 1209 species: Archae -
350; Bacteria - 10795; Metazoa - 16137; Fungi - 8620; Plants
- 3305; Viruses - 957; Other Eukaryotes - 14095 (source: NCBI
BLink). | chr3:5852152-5853080 FORWARD LENGTH=779
Length=779
Score = 1066 bits (577), Expect = 0.0
Identities = 705/763 (92%), Gaps = 23/763 (3%)
Strand=Plus/Plus
Query 1 ACACGAAAATCTCTGAAAATCTTTTTGTTTGAAGAAGATGACGCATGTTGAAGATGATAA 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 19 ACACGAAAATCTCTGAAAGTCTTTTTGTTTGAAGAAGATGACGCATGTTGAAGATGATAA 78
Query 61 GGAATTCAAGGAGGAACCTTTGGTTCAGGTTCTGAGCGACGACGACAGTGAAGTGAAGGA 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 GGAATTCAAGGAGAAACCTTTGGTTCAGGTTCTGAGCGACGACGACAGTGAAGTGAAGGA 138
Query 121 AACCAAAGAC---GGAGGTGAAGAAATTACCGGCGGCGACGGTGAAGGAGAGGCTAACGT 177
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 139 AGCCAAAGACGGAGGAGGTGAAGAAGTTACCGGCGGCGACGGTGAAGGAGAGGCTAATGT 198
Query 178 AGAAGAGGAAgacgatgacgctgatgatgatgacgatgacgatgatgatgatgatgatga 237
||||||||||||||| || || || |||| |||||||| ||||||||||||||||||||
Sbjct 199 AGAAGAGGAAGACGACGAAGCAGAAAATGAAGACGATGATGATGATGATGATGATGATGA 258
Query 238 cgacgaggacgatga--A-GAAGA-GAAAAACGTGCAGGAGGAGGATCTTGGGACAGAGT 293
||||| ||||| || | || || ||| || | | |||||||||||||||||||||||
Sbjct 259 TGACGACGACGAGGACGAGGACGATGAAGAA-G-G--GGAGGAGGATCTTGGGACAGAGT 314
Query 294 ACCTAGTGAGGCCGGTTGGTGAGGTTGAAGATGAGGATGATGCAAGTGATTTTGACCCTG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 ACCTAGTGAGGCCGGTTGGTGAGGTTGAAGATGAGGATGATGCAAGTGATTTTGACCCTG 374
Query 354 AGGAGAATGGCGTGGATGAAGAAGACGGTGATGAAGAGATTGAAGAAGACGATGTTGATG 413
||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 375 AGGAGAATGGCTTGGATGAAGAAGAAGGTGATGAAGAGATTGAAGAAGATGATGTTGATG 434
Query 414 AGGACATCAGCTTGAGTGCTGGCAAATCTGAGCCTCTATCCAAGAGGAAGAGGGTTGCTA 473
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 435 AGGACATCAGCTTGAGTGCTGGCAAATCTGAGCCTCTGTCCAAGAGGAAGAGGGTTGCTA 494
Query 474 AAGACCACAATGAGCAAGGAGATGTCACTGGTGATGACATTAGGCCTTCTAAACGGTAGT 533
| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 495 AGGACCACAGTGAGCAAGGAGATGTCACTGGTGATAACATTAGGCCTTCTAAACGGTAGT 554
Query 534 TCTTCTAACTTCGAACTGATCTCAATCCAAGAA-ACAAGTCGGAACTGGATTCGAAAAC- 591
||||||||||||||||||||||||||||||||| | ||||| ||| | |||||||| |
Sbjct 555 TCTTCTAACTTCGAACTGATCTCAATCCAAGAAGA-AAGTCAGAAATTGATTCGAATTCT 613
Query 592 -AGTATTT-GAATCATTCATTGGGTTGATGTAGTTTTTAATCTAATGGTAGT-GT-T-GC 646
||||||| ||||||||| ||||||||||||||||||||||||||||||||| || | ||
Sbjct 614 CAGTATTTTGAATCATTCGTTGGGTTGATGTAGTTTTTAATCTAATGGTAGTAGTGTTGC 673
Query 647 TTAGAGCTTAATGGATTGTTGTTTCTT-T--ATGTTCCTTGAGACAGCTT-CAAACAAGT 702
||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||
Sbjct 674 TTAGAGCTTAATGGATTGTTGTTTCTTCTTTATGTTCCTTGAGACTGCTTTCAAACAAGT 733
Query 703 TTAAGTATCCAACGCTTTTCTTTTCAAAGGAAGAATTTAGTTT 745
|||||||| |||||||||||||||||| |||| | ||||||||
Sbjct 734 TTAAGTATTCAACGCTTTTCTTTTCAAGGGAATAGTTTAGTTT 776
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36168585840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5