BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479190
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17180.1 | Symbols: scpl33 | serine carboxypeptidase-like 33... 2322 0.0
> AT3G17180.1 | Symbols: scpl33 | serine carboxypeptidase-like
33 | chr3:5855861-5859157 REVERSE LENGTH=1437
Length=1437
Score = 2322 bits (1257), Expect = 0.0
Identities = 1378/1438 (96%), Gaps = 2/1438 (0%)
Strand=Plus/Plus
Query 1 ATGAATTTGACTCTTCCGATGAAAAAACAAAATTTTCTGCTAATCATCTCATTATTGATA 60
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAATTTGACACTTCCGATGAAAAAACAAAAATTTCTGCTAATCATCTCATTATTGATA 60
Query 61 TTATTATCATTACTTCATCAAGATTATCACATTGACGCTCAGAATTCAGACAAAGTAGTG 120
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 61 TTATTATCATTACTTCATCAAGATTATCACATTGAAGCTCAAAATTCAGACAAAGTAGTC 120
Query 121 AATCTTCCTCAACAACCATTGAATCCTAAGATCTCTCACGTCTCAGGATATATCAACGTG 180
||||||||| |||||||| |||| || ||||||||||| ||||||| ||| |||||||
Sbjct 121 AATCTTCCTGAACAACCACTGAACCCAAAGATCTCTCATTTCTCAGGTTATGTCAACGTC 180
Query 181 AATCAAGAAAATACACGATCACTCTTCTTTTGGTTCTTCGAAGCCTTGTCTGAATCTCCT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 AATCAAGAAAATACACGATCACTCTTCTTTTGGTTCTTCGAAGCATTGTCTGAATCTCCT 240
Query 241 TCAACAAGACCTCTAGTTCTCTGGCTCAACGGAGGTCCTGGATGTTCATCTATTGGATAT 300
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 241 TCAACAAGACCTCTAGTTCTCTGGCTCAATGGAGGTCCTGGATGTTCATCGATTGGATAT 300
Query 301 GGAGCAGCATCTGAATTAGGACCTTTTCGTGTTGTTGAAAATGGGACAAGCCTTAGTTTC 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 GGAGCAGCATCTGAATTAGGACCTTTTCGTGTTGTTGAAAATGGGACAAGTCTTAGTTTC 360
Query 361 AATCAATATTCTTGGGTCCAAGAAGCGAATATATTGTTTTTAGAATCACCAGTTGGAGTA 420
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 361 AATCAATACTCTTGGGTCCAAGAAGCGAATATGTTGTTTTTAGAATCACCAGTCGGAGTA 420
Query 421 GGGTTTTCGTACACGAACTCATCTTCCGATTTGGACAACCTCAACGACGCTTTCGTTGCG 480
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 421 GGGTTTTCGTACACGAACTCATCATCTGATTTGGAAAACCTCAACGACGCTTTCGTTGCG 480
Query 481 GAAGATGCATACAACTTTATGGTTGCTTGGTTTGCAAGGTATCCCCAATATAAGTCTCGT 540
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 481 GAAGATGCATACAACTTCATGGTTGCTTGGTTTGCAAGGTATCCTCAGTATAAGTCTCGT 540
Query 541 GATTTCTTCATAGCTGGTGAAAGCTATGCCGGTCACTACGCACCTCAGCTAGCCGAGCTT 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 GATTTCTTCATAGCTGGTGAAAGCTATGCCGGTCACTACTCACCTCAGCTAGCCGAGCTT 600
Query 601 ATATACGATCGGAACAAAGTTAAGCCAAAGGACTCCTTCATTAATCTCAAAGGCTTCATC 660
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATATACGATCGGAACAAAGTTCAGCCAAAGGACTCCTTCATTAATCTCAAAGGCTTCATC 660
Query 661 GTGGGAAATCCGTTGACGGATGATGAATACGATAACAAAGGGATTCTAGAATACGCATGG 720
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GTGGGAAATCCATTGACGGACGATGAGTACGATAACAAAGGGATTCTAGAATACGCATGG 720
Query 721 AGCCATGCAGTGATCTCTGATGATCTCTACGACTCCGCAAAACGTAACTGCGACTTCAAG 780
||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct 721 AGCCATGCAGTGATCTCTGATCATCTTTACGACTCCGCAAAACATAACTGCGACTTCAAG 780
Query 781 TCTTCGAATTGGTCAGAGCCCTGCAACGTTGCCATGAACACAGTGTTCACAAAATACAAA 840
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 781 TCTTCGAACTGGTCAGAGCCATGCAACGTTGCTATGAACACAGTGTTCACAAAATACAAA 840
Query 841 GAGATTGATATTTATAACATATATGCTCCCAAGTGCATAGCTAATAGCTCATCAGGAGCT 900
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 841 GAGATTGATATTTATAACATATATGCTCCCAAGTGCATATCTAATAGCTCATCAGGAGCT 900
Query 901 TCCTACTTAGATTCCGGAGTCAATCATAAGTCTCCGGCGGTCAAAGACTGGTTCAAGAGA 960
|||||||||| || |||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 901 TCCTACTTAGGTTTCGGAGTCAATGATAAGTCTCCGGCGGTTAAAGACTGGTTCAAGAGA 960
Query 961 GTGAGATGGTTTGAAGGATACGATCCTTGTTACTCTAATTACGCTGAAGAATATTTCAAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTGAGATGGTTTGAAGGATACGATCCTTGTTACTCTAATTACGCTGAAGAATATTTCAAT 1020
Query 1021 AGGGTCGATGTTCGATCGTCTCTTCATGCCACTACACGAAATGTAGCAAGATGGAAAGTT 1080
|| ||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1021 AGAGTCGATGTTCGATTGTCTCTTCATGCTACTACACGAAATGTAGCAAGGTGGAAAGTT 1080
Query 1081 TGCAATGATTCGATATTGCAAACGTACCATTTTACAGTCTCCTCAATGTTGCCTACATAT 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1081 TGCAATGATTCGATATTGCAAACGTACCATTTTACAGTCTCCTCAATGTTGCCTACTTAT 1140
Query 1141 AGTAAGCTCATCAAAGCTGGCCTCAAGATATGGGTTTATAGTGGAGATGCCGACGGGAGA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGTAAGCTCATCAAAGCTGGCCTCAAGATATGGGTTTATAGTGGAGATGCCGACGGGAGA 1200
Query 1201 GTCCCAGTTATCGGAAGTCGGTATTGTGTTGAAGCTCTT-GGGCTTTCCGTCAAATCCGA 1259
||||| || ||||||||||||||||||||||||||| || ||| ||||||||||||| ||
Sbjct 1201 GTCCCGGTGATCGGAAGTCGGTATTGTGTTGAAGCT-TTAGGGATTTCCGTCAAATCGGA 1259
Query 1260 ATGGCGTTCTTGGTTCCACAATCATCAGGTGGGAGGGAGGATAACAGAGTACGAAGGAGG 1319
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 1260 GTGGCGTTCTTGGTTCCACAATCATCAGGTGGGAGGGAGAATAACGGAGTACGAGGGAGG 1319
Query 1320 GTTAACGTTCGTAACGGTGAGAGGAGCTGGACACTTGGTTCCTCTCAATAAACCTGAAGA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GTTAACGTTCGTAACGGTGAGAGGAGCTGGACACTTGGTTCCTCTCAATAAACCTGAAGA 1379
Query 1380 AGCTCTCGCGCTTTTCCGGTCCTTCCTTAACGGCCAAGAACTTCCGTCACGGCCCTAG 1437
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1380 AGCTCTCGCGCTTTTCCGGTCCTTCCTTAACGGCCAAGAACTTCCGTCAAGCCCCTAG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70832968995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5