BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479193

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17210.1 | Symbols: ATHS1, HS1 | heat stable protein 1 | chr...   595    1e-169


> AT3G17210.1 | Symbols: ATHS1, HS1 | heat stable protein 1 | chr3:5882284-5883200 
FORWARD LENGTH=668
Length=668

 Score =  595 bits (322),  Expect = 1e-169
 Identities = 399/433 (92%), Gaps = 18/433 (4%)
 Strand=Plus/Plus

Query  1    AGGATCAAAAATGGAGGAAGCAAAGGGAGCTGTGGTGAAGCACGTATTGCTTGCTAAG-T  59
            |||||||||||||||||||||||||||| |  | ||||||||||||||||||||| || |
Sbjct  25   AGGATCAAAAATGGAGGAAGCAAAGGGA-C-CT-GTGAAGCACGTATTGCTTGCT-AGTT  80

Query  60   TCAAAGATGGCGTAAGCCCTGAGAAAATGGAAGAGCTTATCAAAGGTTACGCCAATCTCG  119
            |||||||||| || || ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  81   TCAAAGATGGGGTTAGTCCTGAGAAAATCGAAGAGCTCATCAAAGGTTACGCCAATCTCG  140

Query  120  TCAATCTCATCGAACCTATGAAAGCTTTCCACTGGGGAGAAGATGTGAGCATTGAGAATC  179
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  141  TCAATCTCATCGAACCTATGAAAGCTTTCCACTGGGGAAAAGATGTGAGCATTGAGAATC  200

Query  180  TGCATCAAGGTTACACACACATCTTTGAATCCACATTTGAGAGCAAAGAAGCTGTTGCAG  239
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  201  TGCATCAAGGTTACACACACATCTTTGAATCCACATTTGAGAGTAAAGAAGCTGTTGCAG  260

Query  240  AGTACATTGCTCATCCTGCTCACGTTGAATTCGCCACCATCTTTCTTGGCAGCTTGGATA  299
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  261  AGTACATTGCTCATCCTGCTCACGTTGAATTCGCCACCATCTTCCTTGGCAGCTTGGATA  320

Query  300  AAGTATTGGTTATTGACTACAAGCCTACCTCTGTCTCTCTCTAATTATGTGTTGCAGCAG  359
            |||| ||||||||||||||||||||||||||||||||||||||||||| | | | |||||
Sbjct  321  AAGTTTTGGTTATTGACTACAAGCCTACCTCTGTCTCTCTCTAATTATCT-T-GTAGCAG  378

Query  360  CATTTTCCTCTTTGATCtttttttCTCGGGTATG--T-----ATGTCGAATAAAGT-TAT  411
            ||||||| || |||||||||||  ||||||||||  |     |||| ||||||||| |||
Sbjct  379  CATTTTCATCATTGATCTTTTT--CTCGGGTATGCATCTTGTATGTTGAATAAAGTATAT  436

Query  412  TTCTTTTTGAGTT  424
            | ||||| |||||
Sbjct  437  TCCTTTT-GAGTT  448



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22655600297


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5