BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479194

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17220.1 | Symbols: ATPMEI2, PMEI2 | pectin methylesterase i...   730    0.0  


> AT3G17220.1 | Symbols: ATPMEI2, PMEI2 | pectin methylesterase 
inhibitor 2 | chr3:5883328-5883849 REVERSE LENGTH=522
Length=522

 Score =  730 bits (395),  Expect = 0.0
 Identities = 443/467 (95%), Gaps = 0/467 (0%)
 Strand=Plus/Plus

Query  1    ATGATTGGTGCCTTGAATGCACAAGTAGCAGACATAAAAGCAATCTGTGGGAAAGCGAAA  60
            |||| |||| | ||||| |||||||| |||||||||||||| || ||||| |||||||||
Sbjct  55   ATGACTGGTTCTTTGAACGCACAAGTGGCAGACATAAAAGCGATATGTGGAAAAGCGAAA  114

Query  61   AACCAATCCTTCTGCACTAGCTACATGAAATCCAACCCAAAGACCTCAGGTGCTGATCTT  120
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  115  AACCAATCCTTCTGTACGAGCTACATGAAATCCAACCCAAAGACCTCAGGTGCTGATCTT  174

Query  121  CAAACGCTAGCAAAGATCACCTTTGGTTCTGCACAAACAAGTGCATCAGAAGGTTTCAAG  180
            |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  175  CAAACGCTTGCAAATATCACATTTGGTTCTGCACAAACAAGTGCATCAGAAGGTTTCAGG  234

Query  181  AAAATTCAATCCCTAGTCAAGACAGCAACCAACCCCACTATGAAGAAAGCATACACCTCG  240
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  235  AAAATTCAATCTCTAGTCAAGACAGCAACCAACCCCACTATGAAGAAAGCATACACCTCA  294

Query  241  TGCGTACAACATTATAAGAGTGCAATCAGCAGTCTCAATGATGCTAAGCAGAGCCTGGCG  300
            || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  295  TGTGTACAACATTATAAGAGTGCAATAAGCAGTCTCAATGATGCTAAGCAGAGCCTGGCG  354

Query  301  TCAGGCGATGGGAAAGGGCTGAACATTAAGGTCTCAGCAGCTATGGAAGGACCTTCAACA  360
            ||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct  355  TCAGGCGATGGCAAAGGGTTGAACATTAAGGTTTCAGCAGCTATGGAAGGACCTTCAACA  414

Query  361  TGTGAACAAGACATGGCGAATTTCAAAGTAGATCCTTCAGCTGTGAAGAACAGTGGTGAT  420
            |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct  415  TGTGAACAAGACATGGCGGATTTCAAAGTTGATCCTTCAGCTGTGAAGAACAGTGGTGAT  474

Query  421  TTTCAGAATATTTGTGGCATTGTTCTTGTCATCTCAAACATGATGTG  467
            ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  475  TTTCAGAATATTTGTGGCATTGTACTTGTCATCTCAAACATGATGTG  521



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22203492974


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5