BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479200
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17250.1 | Symbols: | Protein phosphatase 2C family protein... 2152 0.0
> AT3G17250.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:5892561-5894446 REVERSE LENGTH=1603
Length=1603
Score = 2152 bits (1165), Expect = 0.0
Identities = 1355/1447 (94%), Gaps = 11/1447 (1%)
Strand=Plus/Plus
Query 1 GTAATTTATCCAAAATTAAAATGCGTCCAAGCAAAGCTTCAGTGACTCAAACATGGCTGC 60
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1 GTAATTTATCCAAAATTAAAATGCGTACAAGCAAAGCTTCAGTGACCCAAACATGGCTGC 60
Query 61 TTTACAGACAGCTTTGTCTTTGGAAAGATCTCTTAATCAGCTTTGTCCGTCAGTTCATAA 120
|||||| ||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||
Sbjct 61 TTTACACACAGCTTTGTCTTTGGAAAGATCTCATAATCCGCTATGTCCGTCAGATCATAA 120
Query 121 GAAGAGCAAAATCGATGCTTTTGAGTCATAACATGGTCGCTGATTCTGCTGAGATCAGTG 180
|||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||
Sbjct 121 GAAGAGCAAAATCGATGCTTTTCAGTCAAAACATGGTCGCTGATTCCGCCGAGATCAGTG 180
Query 181 TTATCGATGTCAAGTCTCATCTCTCCGTTGGGAAAGATCCTAGTAACTTTCAGATTGCTG 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 181 TTATCGATGTCAAGTCTCATCTCTCCGTTGCGAAAGATCCTAGTAACTTTCAGATTGCCG 240
Query 241 AAATTCGAATTCATGATTCAATCTGTATTGAGATTCCGGGCTCTGAAGAAACGCCTCTTT 300
|||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 241 AAATTCGAATTCATGATTCAATTTGTATTGATATTCCGAGCTCTGAAGAAACGCCTCTTT 300
Query 301 TAGGATCGGTCAAGAGTTGTTCTGCAGCTGCAACGATTGTTGAAGAGCCTGTTACTGAGT 360
||| |||| ||||||||||||||||| || || | ||||||||| |||||||||||
Sbjct 301 TAGAATCGATCAAGAGTTGTTCTGCAACT---AC---TATTGAAGAGCATGTTACTGAGT 354
Query 361 TTGTCCCAAATATAAGCTCTGGGAGTTATGCGGATAAGGGTGACTACCGGGAGTACATGG 420
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 355 TTGTACCAAATATAAGCTCAGGGAGTTATGCAGATAAGGGTGACTACCGGGAGTACATGG 414
Query 421 AAGATGAACACATATGCATAGACGACCTTTCAGATCATCTTGGGTCCTCCTTCTACAGAT 480
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 415 AAGATGAACACATATGCATAGACGACCTTTCAGATCATCTTGGGTCTTCCTTTTACAGAT 474
Query 481 TTCCGGTGCCTATCGCTTTCTACGGTGTGTTTGATGGCCATGGTGGATCTGAGGCATCAC 540
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 475 TTCCGGTGCCTATGGCTTTCTACGGTGTGTTTGATGGCCATGGTGGATCTGACGCATCAC 534
Query 541 AGTATATAAAAGAGAATGCAATGAGATTGTTCTTTGAAGATGCTGTTTTTCGAGAATCGC 600
||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 535 AGTATATAAAAGAGAATGCTATGAGCTTGTTCTTTGAAGATGCTGTTTTTCGACAATCGC 594
Query 601 CCTCCGTTGTGGACACTTTTTTCTTGAAAGAACTGGAGAAATCTCACCGGGAAGCTTATA 660
|||| ||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 CCTCTGTTGTGGACTCTCTTTTCTTGAAAGAACTGGAGACATCTCACCGGGAAGCTTATA 654
Query 661 GGCTTGCTGATCTCGCCATGGATGATGAAAGAATAGTTAGTAGTTCGTGCGGAACAACCG 720
||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 655 GGCTTGCTGATCTTGCAATGGAGGACGAAAGAATAGTTAGTAGTTCGTGCGGAACAACCG 714
Query 721 CATTGACCGCTCTTGTAATCGGAAGACATTTAATGGTCGCTAATGCTGGCGATTGTCGTG 780
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 715 CATTGACTGCTCTTGTAATCGGAAGACATTTAATGGTCGCTAATGTTGGTGATTGTCGTG 774
Query 781 CAGTGCTCTGTAGGAAAGGAAAGGCTGTTGATATGTCATTTGATCACAAATCTACATTTG 840
| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 775 CGGTGCTCTGCAGAAAAGGAAAAGCTGTTGATATGTCATTTGATCACAAATCTACATTTG 834
Query 841 AGCCAGAACGGAGACGGGTAGAGGATTTAGGAGGGTACTTTGAAGGCGAGTATCTCTACG 900
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 835 AGCCAGAACGGAGACGAGTAGAGGATTTAGGAGGGTACTTTGAAGGCGAGTATCTCTATG 894
Query 901 GTGACCTTGCTGTGACAAGAGCTCTTGGAGACTGGTCAATAAAGAGGTTTTCACCCCTTG 960
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GTGACCTTGCTGTTACAAGAGCTCTTGGAGACTGGTCAATAAAGAGGTTTTCACCCCTTG 954
Query 961 GTGGATCTTTCTCACCTCTGATCTCAGACCCGGACATTCAACAGATGATTCTAACCGAGG 1020
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 955 GTGAATCTTTGTCACCTCTGATCTCAGACCCGGACATTCAACAGATGATTCTAACTGAGG 1014
Query 1021 AAGACGAATTCTTGATTATGGGATGTGACGGTGTTTGGGATGTGATGACAAGTCAGTATG 1080
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1015 AAGACGAGTTCTTGATTATGGGATGTGACGGTGTTTGGGACGTGATGACAAGCCAGTATG 1074
Query 1081 CTGTCACTTTCGTCAGGCAAGGACTCAGGAGACAAGGTGACCCAAGAAGGTGCGCTCTGG 1140
|||| |||||||||||||||||||| |||||||| ||||| || |||||||||||| |||
Sbjct 1075 CTGTTACTTTCGTCAGGCAAGGACTTAGGAGACACGGTGATCCTAGAAGGTGCGCTATGG 1134
Query 1141 AGCTCGGAAGGGAAGCGTTGAGGCTAGACTCATCAGATAACGTTACAGTGGTGATCATCT 1200
| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1135 AACTTGGAAGGGAAGCGTTAAGGCTAGACTCATCAGATAACGTTACAGTGGTGGTCATCT 1194
Query 1201 GCTTCTCATCATCACCAGCTCCTCAGAGAAGAAGAATACGGTTCTGTGTTTCCGATGAAG 1260
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1195 GCTTCTCATCATCCCCAGCTCCTCAGAGAAGAAGGATACGGTTCTGTGTTTCCGATGAAG 1254
Query 1261 CCCGAGCCCGGTTACAGACAATGCTAGAAGGCTAACTGATGAAGGTTTTTGAGCTGTCTT 1320
| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1255 CTCGAGCCCGGTTACAGACAATGCTAGAAGGCTAACTGATGAAGGTTTTTTAGCGGTCTT 1314
Query 1321 GAGGAGGGGACAATGTATATATTATTGCAACAGAGATGGA-TTTTGACTTTTGAGATAAC 1379
|||||||| |||||||||||||||| |||||| |||||| |||||| | | | |||
Sbjct 1315 GAGGAGGGCACAATGTATATATTATAGCAACAAAGATGGGGTTTTGAGAT---A-ACAAC 1370
Query 1380 CCTGCCAAGGCCAAATGATTTGATGACATTATCACATCTCTCTGATATCGGATGAAATAA 1439
||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1371 CCTCCCAAGGCCAAATTATTTGATGACATTATTACATCTCTCTGATATTGGATGAAATAA 1430
Query 1440 AAGGAAG 1446
|||||||
Sbjct 1431 AAGGAAG 1437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75802822950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5