BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479202
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT2G13130.1 | Symbols: | pseudogene, F-box protein family, con... 883 0.0
AT3G17270.1 | Symbols: | F-box family protein | chr3:5902479-5... 390 1e-107
AT3G17570.1 | Symbols: | F-box and associated interaction doma... 165 8e-40
> AT2G13130.1 | Symbols: | pseudogene, F-box protein family, contains
Pfam PF00646: F-box domain; similar to F-box protein
family, AtFBX9 (GI:20197985) (Arabidopsis thaliana) | chr2:5419675-5420834
REVERSE LENGTH=1160
Length=1160
Score = 883 bits (478), Expect = 0.0
Identities = 611/675 (91%), Gaps = 10/675 (1%)
Strand=Plus/Plus
Query 290 AAAAACTCCGGGTTGCTGTGTTTGAAATCTATGATTTTGGATCTGATTCTTGG-AGGGTT 348
|||| || || || |||| ||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 454 AAAATCTTCGTGTAGCTGAGTTTGAAATCTTTGATTTTGGATCTGATT-GTGGAAGGGTT 512
Query 349 CTTGATGATGATATGATTTGGGGCATATTTTCTGCTGGCGTTTCTTTGAATGG-AGATAC 407
||||||||| ||| | |||||| ||||| |||||||| || ||||| ||||| | ||||
Sbjct 513 ATTGATGATGCTATCACTTGGGGAATATTCTCTGCTGGTGTGTCTTTCAATGGTA-ATAC 571
Query 408 TTTTTGGATTGGTGGAGACAAAGAAACTGGTTTTTTCTTGATGTATTTCGATTTCACAAC 467
|| |||||||||||||| |||||||||||||||||||||||| |||| |||||||||||
Sbjct 572 TTACTGGATTGGTGGAGAGAAAGAAACTGGTTTTTTCTTGATGGATTTTGATTTCACAAC 631
Query 468 AGAGAGATTTGGGCGTTTTCCTCTTCCGTATCAGAGTT-TCGATTATGAAGATATCGCGG 526
|||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 632 AGAGAGGTTTGGGCGTTTTCCTCTTCCGTATCAGAGTTAT-GATTATGAAGATATCGCGG 690
Query 527 TTCTATCACTTGTTAGGGAAGAAAAACTCTCCTTGTTGAATCAGAATCTTCATATAAATT 586
||||||| | |||| ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 691 TTCTATCGGTAGTTAAGGAAGAAAAACTCTCCTTGATGAATCAGAATATTCATATAAATT 750
Query 587 CATCAGAGATGAAGATATGGGTGACCAATAAGTTTGATGAGGCCAAAGACTTGTCATGGA 646
| ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 751 CTTCAGAGATGAAGATATGGGTGACTAATAAGTTTGATGAAGCCAAATACTTGTCATGGA 810
Query 647 GCCAGTTCTTAGTAGTGGATTTTGATAAATTTACGTTACCATATGTGAATAGCGTGATAA 706
||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||
Sbjct 811 GCCAGTTCTTAGTAGTGGATTTTGATAAATTTACGTTACCAAATTTGAACAGCGTGATAA 870
Query 707 GTTTCTTCTTGGACGAGGAGAGTAAAGTGGCAGTGTGTTGTTATACAGACATGGAAGATG 766
|||||| ||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 871 CTTTCTTGTTGGACGAGGAGAATAAAGTGGCACTGTGTTGTGATACAGACATGGAAGATG 930
Query 767 AAGAAAGGACCAAAATCTACATTGTTGGAGTGGATCTTTATAAAGAAGTCTATAAAGAGG 826
|||| |||||||||||||| ||||||||||||||||||| |||| |||||| ||||||||
Sbjct 931 AAGAGAGGACCAAAATCTATATTGTTGGAGTGGATCTTTGTAAACAAGTCTTTAAAGAGG 990
Query 827 TTACAAAGGGATCAATTCTCAATTGGCCATGTTTCGTCAGTTATGCTCCAAATTTGGTTC 886
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TTACAAAGGGATCAGTTCTTAATTGGCCATGTTTCGTCAGTTATGCTCCAAATTTGGTTC 1050
Query 887 ACATTCAGAAA-AC-CTCACCCAAAGGCAAAAAGAAAATGAGAGAAAAGGAGGTAACTCA 944
||||||||||| || ||| || |||| ||||||||| |||||| ||||||||||| ||
Sbjct 1051 ACATTCAGAAAGACACTC-CC-AAAGTTAAAAAGAAATTGAGAGCAAAGGAGGTAAGTCT 1108
Query 945 AATGAATCACCTTAG 959
|||| ||||||||||
Sbjct 1109 AATGGATCACCTTAG 1123
Score = 399 bits (216), Expect = 2e-110
Identities = 266/290 (92%), Gaps = 4/290 (1%)
Strand=Plus/Plus
Query 1 ATGATGAAGATTCCCAATCTTCCAGACGATTTGGAATCGGAAATACTCTGC-AGGGTTCC 59
|||| |||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||
Sbjct 16 ATGACGAAGATTCCCAATCTTCCAGACGATTTGGAATCGGAGATACTCT-CTAGGATTCC 74
Query 60 GGCGAAGTCTCTAACGAAACTGAAAACTACTTGTAAAAGATGGTACGCTTTGTTCAGAGA 119
||| ||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||
Sbjct 75 GGCAAAGTCTCTAACGAAATTGAAAACTACTTGTAAAAGATGGTACGTTTTATTCAGAGA 134
Query 120 TCCGAGATTCGTGAAGCAGAACTTGGGTAAATCAGCGAGGGAAGTGATGTTACTGATGAA 179
||||| ||||| |||| |||||||||||||||||||||| || ||||||||| |||||||
Sbjct 135 TCCGAAATTCGCGAAGAAGAACTTGGGTAAATCAGCGAGAGAGGTGATGTTAGTGATGAA 194
Query 180 TCATAGGGTT-CACTCAATTAGCGTCAATCGCCATGGAATTCACGACGGAGTTGATCCAT 238
||| ||| || ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 195 TCAAAGG-TTACACTCAATTAGCGTCAATCGCCATGGAATTCACGAGGGCGTTGATCCAT 253
Query 239 CTATGGAGTTCTCAGGTAAACTCATCAGGCTAAGCGATTCGAAAGATGTC 288
| |||||||| ||||||||||||||| ||||||||||||||||||| |||
Sbjct 254 CCATGGAGTTTTCAGGTAAACTCATCCGGCTAAGCGATTCGAAAGACGTC 303
> AT3G17270.1 | Symbols: | F-box family protein | chr3:5902479-5902883
REVERSE LENGTH=405
Length=405
Score = 390 bits (211), Expect = 1e-107
Identities = 261/285 (92%), Gaps = 4/285 (1%)
Strand=Plus/Plus
Query 9 GATTCCCAATCTTCCAGACGATTTGGAATCGGAAATACTCTGC-AGGGTTCCGGCGAAGT 67
||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct 9 GATTCCCAATCTTCCAGACGAATTGGAATCGGAAATACTCT-CTAGGGTTCCGGCGAAGT 67
Query 68 CTCTAACGAAACT-GAAAACTACTTGTAAAAGATGGTACGCTTTGTTCAGAGATCCGAGA 126
||||| ||||| | ||| |||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 68 CTCTAGCGAAA-TGGAAGACTATTTGCAAACGATGGTACGCTTTGTTCAGAGATCCGAGA 126
Query 127 TTCGTGAAGCAGAACTTGGGTAAATCAGCGAGGGAAGTGATGTTACTGATGAATCATAGG 186
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 127 TTCGTGAAGAAGAACTTGTGTAAATCAGCGAGGGAAGTGATGTTACTGATGAATGATAGG 186
Query 187 GTTCACTCAATTAGCGTCAATCGCCATGGAATTCACGACGGAGTTGATCCATCTATGGAG 246
||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||
Sbjct 187 GTTCACTCAATTAGCGTCAATCGCCATGGAATTGACGACAGATTTGAACCATCTATGGAG 246
Query 247 TTCTCAGGTAAACTCATCAGGCTAAGCGATTCGAAAGATGTCAAA 291
|| ||||||||||||| || |||| ||||||||||| ||||||
Sbjct 247 TTTTCAGGTAAACTCAGGAGTCTAATTGATTCGAAAGACGTCAAA 291
Score = 126 bits (68), Expect = 4e-28
Identities = 79/84 (94%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 968 GGAGGCAAACTTGGCAAGAAGCCTTAACGCAATCTGACGCGAAACTCAAATCCAA-CGCA 1026
|||||||||||||||||||||||||||| |||| | |||||||||||||||| || ||||
Sbjct 300 GGAGGCAAACTTGGCAAGAAGCCTTAACACAATGT-ACGCGAAACTCAAATCTAACCGCA 358
Query 1027 TATCCAAATTATGTGGTGGAGTAA 1050
||||||||||||||||||||||||
Sbjct 359 TATCCAAATTATGTGGTGGAGTAA 382
> AT3G17570.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6009407-6010562 FORWARD LENGTH=1156
Length=1156
Score = 165 bits (89), Expect = 8e-40
Identities = 246/320 (77%), Gaps = 18/320 (6%)
Strand=Plus/Plus
Query 584 ATTCATCAGAGATGAAGATATGGGTGACCAATA--AGTTT-GAT-GAGGCCAAAGACTTG 639
|||||||||||||||||||||||||||| |||| | | | | |||||||||||||||
Sbjct 803 ATTCATCAGAGATGAAGATATGGGTGACGAATACTAAAATCG-TCGAGGCCAAAGACTTG 861
Query 640 TCATGGAGCCAGTTCTTAGTAGTGGATTT-TGATAAATTTACGTTACCATATG-TGAATA 697
|| |||||| | ||||| |||||||||| | |||||||| | || || | | ||| |
Sbjct 862 TCGTGGAGCGACTTCTTGGTAGTGGATTCCTC-TAAATTTATGGTAACA-AGGATGACGA 919
Query 698 GCGTGATAAGTTTCTTCTTGGACGAGGAGAGTAAAGTGGCAGTGTGTT-GTTATACAGAC 756
||||| |||||| | |||||||||||| ||| ||| ||| ||| || ||||||||
Sbjct 920 ATGTGATGAGTTTCCTGGTGGACGAGGAGAAAAAAATGGTGGTG-GTTTGTGATACAGAC 978
Query 757 ATGGAAGATGAAGAAAGGACCAAAATCTACATTGTTGGAGTGGATCTTTATAAAGAAGTC 816
|| || | || | | || || | | |||||||| |||| |||| | || ||||||||
Sbjct 979 ATTGA---TCAACATATGAACAGATTTTACATTGTCGGAGAGGATATATACAAAGAAGTT 1035
Query 817 TATAAAGAGGTTACAAAGGGATCAATTCTCA-ATTGGCCATGTT-TCGTCAGTTATGCTC 874
|||||||| || || |||||| || || |||||||| || || ||||||||||||
Sbjct 1036 TATAAAGATATTGCACAGGGATGGTTT-TCCTATTGGCCAC-TTCTCATCAGTTATGCTC 1093
Query 875 CAAATTTGGTTCACATTCAG 894
||| | ||||||| ||||||
Sbjct 1094 CAAGTCTGGTTCAAATTCAG 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5