BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479213
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17370.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 776 0.0
AT1G63230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 215 5e-55
AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 202 4e-51
AT1G64100.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 145 6e-34
> AT3G17370.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:5949006-5949644 REVERSE LENGTH=639
Length=639
Score = 776 bits (420), Expect = 0.0
Identities = 555/616 (90%), Gaps = 25/616 (4%)
Strand=Plus/Plus
Query 1 ATGTTTAAGGTCATGCGGGAGAGTAATATGGATATGGATACTGCTGTTTATAACATCATC 60
|||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct 1 ATGTTTAAGGTCATGCGGGAGAGTAACATGGATATGGATACAGCTGGTTATAACATCATC 60
Query 61 ATCCATGGAATGTGCAAGGGTGGTAAGTTGGAGGAAGCATGGAATCTATTCACTAATCTG 120
||||||||| ||||||||| ||||||||| || |||||| ||||| |||||||||||||
Sbjct 61 ATCCATGGACTGTGCAAGGCTGGTAAGTTTGACGAAGCAGGGAATATATTCACTAATCTC 120
Query 121 CTCCTCAGTGGTTTGCAACCTGATGTTAAAACTTACAATATGATGATTAGATTCAGCGCG 180
||| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 121 CTCATCAGTGGATTGCAACCTGATGTTCAAACTTACAATATGATGATCAGATTCAGCTCG 180
Query 181 TTAGGGAGGGCTGAAAAATTATATGCAGAGATGCTCCGTAGAGGTATAGTACCCGATACC 240
||||| ||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct 181 TTAGGTAGGGCTGAAAAATTATATGCAGAGATGATCCGTAGAGGTCTAGTCCCCGATACT 240
Query 241 ATCACCTATAACTCAATGATCCATGGACTCTGCAAGCAGAACAAACTAGC-CGAGGCAAG 299
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 241 ATAACCTATAACTCAATGATCCATGGACTCTGCAAGCAGAACAAACTAGCTC-AGGCGAG 299
Query 300 AAAGGTGTTTGATTCCATGGATAACAAGAGCTGCTCAACTTTTAATACACTCATTAATGG 359
|||||| || ||| | |||||||||||| ||||||||||||||||||||
Sbjct 300 AAAGGT-----AT-CCA---A------GAGCTGCTCAACGTTTAATACACTCATTAATGG 344
Query 360 TTACTGTAAAGCAAGAAGGGTTGATGATGGGATTGA-TCTTTTCTGCGAGATGTATCGAA 418
|||||||||||||| ||||||| | |||||||| || |||||||||||||||||||||||
Sbjct 345 TTACTGTAAAGCAACAAGGGTTAAAGATGGGAT-GAATCTTTTCTGCGAGATGTATCGAA 403
Query 419 GAGGAATAGTTGCTAATGTAATTACTTACACTACTTTGATTCATGGGTTTCGTCAAGTTG 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 404 GAGGAATAGTTGCTAATGTAATTACTTACACCACTTTGATTCATGGGTTTCGTCAAGTTG 463
Query 479 GTGATTTTAAAACCGCTCT-AGGCATTTTCCAGGAGATGGTTTCTAGTGGTGTGCGTTCT 537
|||||||||| ||||| || || ||||||||||||||||||||||| ||||||| ||||
Sbjct 464 GTGATTTTAATACCGC-CTTAGACATTTTCCAGGAGATGGTTTCTAATGGTGTGTATTCT 522
Query 538 AGTTCGATAACTTTCCGCGATATTCTT-CC-CGAGTTATGCAGTAAGAAGGAGCTAAGAA 595
||||||||||| ||||| |||||| || || | |||||||||||| |||||| |||||||
Sbjct 523 AGTTCGATAACGTTCCGTGATATT-TTGCCAC-AGTTATGCAGTAGGAAGGAACTAAGAA 580
Query 596 AGGCAGTGGCAATGCT 611
||||||||||||||||
Sbjct 581 AGGCAGTGGCAATGCT 596
> AT1G63230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23450654-23452311 FORWARD LENGTH=1572
Length=1572
Score = 215 bits (116), Expect = 5e-55
Identities = 355/466 (76%), Gaps = 34/466 (7%)
Strand=Plus/Plus
Query 189 GGCTGAA-AAATTATATGCAGAGATGCTCCGTAGAGGTATAGTACCCGA-TACCATCACC 246
||||||| ||| |||| | || ||||| |||||||||||| | || | || |||||
Sbjct 982 GGCTGAAGAAA-TATACGGTGACATGCTTCGTAGAGGTATA-TTTCCTACCACAATCACA 1039
Query 247 TATAACTCAATGATCCATGGACTCTGCAAGCA-GAACAAACTAGCCGAGGCAAGAAAG-G 304
||||||||||||||| ||||| | |||||||| || | ||| || || | ||| |
Sbjct 1040 TATAACTCAATGATCGATGGATTTTGCAAGCAGGATC-GTCTAAATGATGC--G-AAGCG 1095
Query 305 --TGTTTGATTCCATGGATAACAAGAGCTG--CT-C------A---ACTTTTAATACACT 350
|||| ||||| |||| || ||||||||| || | | ||||||| || ||
Sbjct 1096 CATGTTAGATTCGATGGCTAGCAAGAGCTGCTCTCCGGATGTAGTCACTTTTAGCACCCT 1155
Query 351 CATTAATGGTTACTGTAAAGC-AAGAAGGGTTGATGATGGGATTGATCTTTTCTGCGAGA 409
||| ||||| || ||||| || || ||||||||| |||| || || ||||||| ||||
Sbjct 1156 CATCAATGGCTATTGTAAGGCTAA-AAGGGTTGACAATGGAATGGAGATTTTCTGTGAGA 1214
Query 410 TGTATCGAAGAGGAATAGTTGCTAATGTAATTACTTACACTACTTTGATTCATGGGTTTC 469
|| ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct 1215 TGCATCGAAGAGGAATTGTTGCTAATACAGTTACTTACACTACTTTGATTCATGGGTTTT 1274
Query 470 GTCAAGTTGGTGATTTTAAAACCGCTCTAGGCATTTTCCAGGAGATGGTTTCTAGTGGTG 529
||||||| |||||| | | |||||| || | || || | | |||| | ||||||||||
Sbjct 1275 GTCAAGTGGGTGATCTCGATGCCGCTCAAGACCTTCTCAATGTGATGATCTCTAGTGGTG 1334
Query 530 TGCGTTCTAG-TT-CGATAACTTTCC-GCGATATTCTTCCCGAG-TTATGCAGTAAGAAG 585
|| | || | || | || ||||||| | | ||| || || || |||||||||||||||
Sbjct 1335 TG-GCTCCAAATTAC-ATCACTTTCCAGAG-TATGCTGGCC-AGCTTATGCAGTAAGAAG 1390
Query 586 GAGCTAAGAAAGGCAGTGGCAATGCTGGTGGATTTGCAGAAGAGTG 631
|| || |||||||| | ||||| ||| |||| ||||||||||||
Sbjct 1391 GAATTACGAAAGGCATTTGCAATATTGGAGGATCTGCAGAAGAGTG 1436
> AT1G63630.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23587298-23588220 FORWARD LENGTH=774
Length=774
Score = 202 bits (109), Expect = 4e-51
Identities = 238/300 (79%), Gaps = 10/300 (3%)
Strand=Plus/Plus
Query 337 ACTTTTAATACACTCATTAATGGTTACTGTAAAGC-AAGAAGGGTTGATGATGGGATTGA 395
||||||| || || || ||||| || ||||| || || ||||||||| |||| || ||
Sbjct 454 ACTTTTAGCACCCTAATCAATGGCTATTGTAAGGCTAA-AAGGGTTGACAATGGAATGGA 512
Query 396 TCTTTTCTGCGAGATGTATCGAAGAGGAATAGTTGCTAATGTAATTACTTACACTACTTT 455
||||||| |||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 513 GATTTTCTGTGAGATGCATCGAAGAGGAATAGTTGCTAATACAGTTACTTACACTACTTT 572
Query 456 GATTCATGGGTTTCGTCAAGTTGGTGATTTTAAAACCGCTCTAGGCATTTTCCAGGAGAT 515
||||||||||||| ||||||| |||||| | | |||||| || | || || | |||||
Sbjct 573 GATTCATGGGTTTTGTCAAGTGGGTGATCTCGATGCCGCTCAAGACCTTCTCAATGAGAT 632
Query 516 GGTTTCTAGTGGTGTGCGTTCTAG-TT-CGATAACTTTCCGC-GATATTCTTCCCGAG-T 571
| ||||| |||||||| | || || || | || ||||||| | | ||| || ||| | |
Sbjct 633 GATTTCTTGTGGTGTG-GCTCCAGATTAC-ATCACTTTCCACTG-TATGCTGGCCG-GCT 688
Query 572 TATGCAGTAAGAAGGAGCTAAGAAAGGCAGTGGCAATGCTGGTGGATTTGCAGAAGAGTG 631
||||||||||||| || || |||| ||| | ||||| ||| |||| ||||||||||||
Sbjct 689 TATGCAGTAAGAAAGAATTACGAAAAGCATTTGCAATATTGGAGGATCTGCAGAAGAGTG 748
> AT1G64100.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23791585-23793641 FORWARD LENGTH=2001
Length=2001
Score = 145 bits (78), Expect = 6e-34
Identities = 126/149 (85%), Gaps = 4/149 (3%)
Strand=Plus/Plus
Query 21 GAGTAATATGGATATGGATACTGCTGTTTATAACATCATCATCCATGGAATGTGCAAGGG 80
|||||| || ||| | ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1590 GAGTAAGATTGATCTTGATACTGTTGCTTATAACATCATCATCCATGGAATGTGCAAGGG 1649
Query 81 TGGTAAGTTGGAGGAAGCATGGAATCTATTCACTAATCTGCTCC-TC-AGTGGTTTGCAA 138
| ||||| |||| ||||||||| | |||||| || ||||| || || | |||| || ||
Sbjct 1650 TAGTAAGGTGGACGAAGCATGGGACCTATTCTGTAGTCTGC-CCATCCA-TGGTGTGGAA 1707
Query 139 CCTGATGTTAAAACTTACAATATGATGAT 167
||||||||| ||||||||||| | |||||
Sbjct 1708 CCTGATGTTCAAACTTACAATGTAATGAT 1736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5