BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479214
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17380.1 | Symbols: | TRAF-like family protein | chr3:59502... 1616 0.0
> AT3G17380.1 | Symbols: | TRAF-like family protein | chr3:5950200-5952235
FORWARD LENGTH=1081
Length=1081
Score = 1616 bits (875), Expect = 0.0
Identities = 953/991 (96%), Gaps = 4/991 (0%)
Strand=Plus/Plus
Query 1 ATATTCACTAGTTTTCTTTCTGGTTTCTGCATATCTTCTCATGGCCAGTTCCGGTGATCA 60
||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATATTGACTAGTTTTCTCTCTCGTTTCTGCATATCTTCTCATGGCCAGTTCCGGTGATTA 60
Query 61 TGATGAAATTATAAAGTCTATATCTGATGCCCCACCAACACATTACATGGTCAAGATAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGATGAAATTATAAAGTCTATATCTGATGCCCCACCAACACATTACATGGTCAAGATAGA 120
Query 121 ATCATTCTCACTTGTGACAAAGCATGCTATAGAGAGATATGAAACTGAGAGCTTTGAAGC 180
|| |||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 GTCTTTCTCACTCCTTACAAAGCATGCTATTGAGAGATATGAAACTGAGAGCTTTGAAGC 180
Query 181 TGGAGGCTACAAATGGAAACTGGTTCTGTACCCAAATGGAAACAAGAGCAAGAATACGAA 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGTGGCTACAAATGGAAACTGGTTCTGTACCCAAATGGAAACAAGAGCAAGAATACGAA 240
Query 241 AGACCATGTTTCTGTTTACTTAG-CTCTTGCGGACTCTAGTTCACTAAGTCCAGGATGGG 299
||||||||||||||||||||| | |||||||||||||||||||| |||||||||| ||||
Sbjct 241 AGACCATGTTTCTGTTTACTT-GTCTCTTGCGGACTCTAGTTCATTAAGTCCAGGGTGGG 299
Query 300 AGGTTTATGCAGTTTTTCGTCTGTACTTACTGGATCAAAACAAAGATAATTATTTGATTC 359
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 300 AGGTTTATGCAGTTTTCCGTCTGTATTTACTGGATCAAAACAAAGATAACTATTTGATTC 359
Query 360 TACAAGGAAACGAGAGACGGTTTCATGCGGTGAAGCGTGAATGGGGATTTGATAAATTCA 419
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 360 TACAAGGAAACGAGAGACGGTTTCATTCGGTGAAGCGCGAATGGGGATTTGATAAATTCA 419
Query 420 TTCCAACCGGTACCTTCTCTGATGCGTCAAACGGTTACCTTATGGGAGACACATGTATGT 479
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TCCCAACCGGTACCTTCTCTGATGCGTCAAACGGTTACCTTATGGAAGACACATGTATGT 479
Query 480 TTGGAGCTGATGTGTTTGTTTCTAAGGAGAGAAGAAGTGGGAGAGGAGAATGTTTATCAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGGAGCTGATGTGTTTGTTTCTAAGGAGAGAAGAAGTGGGAGAGGAGAATGTTTATCAA 539
Query 540 TGATTAAAGATGCTACTAGCTCTAAGCACGTCTGGAAAATTGAGAATTTCTCCAAGTTAG 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 540 TGATTAAAGATGCTACTAGCTCTAAACACGTCTGGAAAATTGAGAATTTCTCCAAGTTAG 599
Query 600 ACAAAGAAAGCTACGACTCAAATGCTTTCTTCGCCGGAGATAGAAAATGGAAGGTAAG-G 658
||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| | || |
Sbjct 600 ACAAAGAGAGCTATGACTCTAATGCTTTCTTCGCTGGAGATAGAAAATGGAAGAT-AGAG 658
Query 659 TTTTATCCAACGGGAACGAAGCAAGGAACAGGAACCCATCTTTCTATCTATCTGACCCTT 718
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTTTATCCTACGGGAACAAAGCAAGGAACAGGAACCCATCTTTCTATCTATCTGACCCTT 718
Query 719 GTTGATCCTGAAACCATTTCAGATGGTACAAAGATATTTGCAGAGTTTACAATTCGAATA 778
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 719 GTTGATCCTGAAACCATTTCAGATGGTACAAAGATATTTGTAGAGTTTACAATTCGAATA 778
Query 779 TTTGATCAGTTACAAGGCAGACACATTGCCGGGAAAGTTACTAAATGGTTTAGTCGATCA 838
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 779 TTTGATCAGTTACAAGGCAGACACATTGCCGGGAAGGTTACTAAATGGTTTAGTCGATCA 838
Query 839 AGCTCGGAGCATGGATGGGTGAAATATGTATCGATGGTGTATTTCACGCAGCCAAACAGT 898
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 839 AGCTCGGAGCATGGATGGGTGAAATATGTATCCATGGTTTATTTCACGCAGCCAAACAGT 898
Query 899 GGTCTGTTGCTCAAAGATGTCTGTCTCGTTGAAGCTGATGTATGCGTTCATGGAATCACC 958
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 899 GGTCTGTTGCTCAAAGATGTATGTCTTGTTGAAGCTGATGTATGCGTTCATGGAATCACC 958
Query 959 AGTGCAATCTAATCTCATCATGTTTTAACTC 989
|||||||||||||||||||||||||||||||
Sbjct 959 AGTGCAATCTAATCTCATCATGTTTTAACTC 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48425717708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5