BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479215
Length=1616
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17390.1 | Symbols: MTO3, SAMS3, MAT4 | S-adenosylmethionine... 2569 0.0
AT2G36880.1 | Symbols: MAT3 | methionine adenosyltransferase 3 ... 830 0.0
> AT3G17390.1 | Symbols: MTO3, SAMS3, MAT4 | S-adenosylmethionine
synthetase family protein | chr3:5952187-5954084 REVERSE
LENGTH=1690
Length=1690
Score = 2569 bits (1391), Expect = 0.0
Identities = 1514/1572 (96%), Gaps = 14/1572 (1%)
Strand=Plus/Plus
Query 1 CTAGATCTCATTGTCTGAACACAGTTAGATGAAACCGGGAATGAATCTGGACGAAATTAC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CTAGATCTCATTGTCTGAACACAGTTAGATGAAACTGGGAATGAATCTGGACGAAATTAC 60
Query 61 GATCTTACACCACCACCCACCCCCTCGACGAGCTCGTATATATAAAGC-TACTACGCTCC 119
|||||| | ||||| |||||||||||||||||||||||||||||| || ||||||||
Sbjct 61 GATCTT--A-CACCA---ACCCCCTCGACGAGCTCGTATATATAAAGCTTA-TACGCTCC 113
Query 120 TCCTTCACCTTCG---TACTACTACCATTACATTTCTTTAGCTCAACCTCCATTACTAAT 176
||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 114 TCCTTCACCTTCGTACTACTACTACCACCACATTTCTTTAGCTCAACCTTCATTACTAAT 173
Query 177 CTCCTTTTAAGGTTTCTTTTTTGAATCGGATCGGAAAAATGGAATCTTTTTTGTTCACAT 236
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 174 CTCCTTTTAAGGTTTCTTTCGTGAATCAGATCGGAAAAATGGAATCTTTTTTGTTCACAT 233
Query 237 CTGAATCCGTCAACGAGGGACATCCCGACAAGCTCTGTGATCAGATCTCCGACGCTATCC 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 234 CTGAATCCGTCAACGAGGGACATCCCGACAAGCTTTGTGATCAGATCTCCGACGCTATCC 293
Query 297 TCGATGCTTGTCTTGAACAAGACCCTGAGAGCAAAGTTGCTTGTGAGACTTGTACCAAGA 356
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TCGATGCTTGCCTTGAACAAGACCCTGAGAGCAAAGTTGCTTGTGAGACTTGTACCAAGA 353
Query 357 CTAACATGGTCATGGTTTTTGGAGAAATCACCACCAAGGCTAATGTTGATTACGAGCAGA 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 354 CTAACATGGTCATGGTTTTTGGAGAAATCACCACCAAGGCTAACGTTGATTACGAGCAGA 413
Query 417 TTGTTCGTAAAACGTGCCGTGATATTGGATTCGTATCTGCTGATGTTGGTCTAGATGCTG 476
||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 414 TTGTTCGTAAAACATGCCGTGAGATTGGATTCGTCTCTGCTGACGTTGGTCTAGATGCTG 473
Query 477 ACAATTGTAAGGTTCTTGTTAACATTGAGCAACAGAGTCCTGACATTGCACAAGGTGTTC 536
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ACAATTGCAAGGTTCTGGTTAACATTGAGCAACAGAGTCCTGACATTGCACAAGGTGTTC 533
Query 537 ATGGTCATCTCACCAAGAAGCCAGAGGAGGTCGGAGCTGGTGATCAAGGTCACATGTTTG 596
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 534 ATGGTCATCTCACCAAGAAGCCAGAGGAGGTTGGAGCTGGTGACCAAGGTCACATGTTTG 593
Query 597 GGTATGCTACTGATGAGACTCCTGAGCTCATGCCGCTTACTCACGTTCTCGCTACTAAGC 656
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 594 GGTATGCTACTGATGAGACTCCTGAGCTCATGCCTCTTACTCACGTTCTCGCTACTAAGC 653
Query 657 TTGGAGCTAAACTCACTGAAGTTCGCAAGAATGGAACTTGCCCGTGGTTGAGGCCTGACG 716
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 654 TTGGAGCTAAACTCACTGAAGTTCGCAAGAATGGAACTTGCCCTTGGTTGAGGCCAGATG 713
Query 717 GTAAGACTCAAGTCACTATTGAGTACATCAACGAAAGCGGAGCCATGGTTCCTGTACGTG 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GTAAGACTCAAGTCACTATTGAGTACATCAACGAAAGCGGAGCCATGGTTCCTGTACGTG 773
Query 777 TCCACACTGTTCTCATCTCAACACAGCACGACGAGACTGTGACTAACGATGAGATCGCAG 836
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 774 TCCACACTGTTCTCATCTCAACACAGCATGACGAGACTGTGACTAACGATGAGATCGCAG 833
Query 837 CTGATCTTAAGGAGCATGTGATCAAGCCAGTGATCCCAGAGAAGTACCTTGATGAGAAAA 896
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 834 CTGATCTTAAGGAGCATGTGATCAAGCCAGTGATCCCAGAGAAATACCTTGATGAGAAAA 893
Query 897 CCATCTTCCATCTCAACCCATCTGGTCGTTTTGTTATTGGAGGTCCTCATGGAGATGCAG 956
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 894 CCATCTTCCATCTCAACCCATCTGGTCGTTTTGTTATCGGAGGTCCTCATGGAGATGCAG 953
Query 957 GGCTTACCGGCCGTAAGATCATCATCGATACTTACGGTGGTTGGGGTGCACATGGAGGTG 1016
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 954 GGCTTACCGGCCGTAAGATCATCATCGATACTTATGGTGGTTGGGGTGCACACGGAGGTG 1013
Query 1017 GTGCTTTCTCTGGGAAGGACCCAACCAAGGTTGACAGGAGTGGGGCTTACATCGTTAGGC 1076
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GTGCTTTCTCTGGAAAGGACCCAACCAAGGTTGACAGGAGTGGGGCTTACATCGTTAGGC 1073
Query 1077 AAGCAGCTAAGAGCATTGTAGCCAGTGGGCTTGCGAGGCGGGTCATTGTGCAAGTCTCCT 1136
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1074 AAGCAGCTAAGAGCATTGTAGCCAGTGGGCTAGCGAGGCGGGTCATTGTGCAAGTCTCGT 1133
Query 1137 ATGCCATTGGTGTCCCTGAGCCATTGTCTGTGTTTGTGGACAGTTATGGAACCGGAAAGA 1196
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1134 ATGCCATTGGTGTCCCTGAGCCATTGTCTGTGTTCGTGGACAGTTATGGAACAGGAAAGA 1193
Query 1197 TACCAGACAAGGAGATTCTTGAGATTGTGAAGGAGAGTTTTGATTTCAGGCCAGGTATGA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TACCAGACAAGGAGATTCTTGAGATTGTGAAGGAGAGTTTTGATTTCAGGCCAGGTATGA 1253
Query 1257 TCTCCATTAACTTGGATTTGAAGAGAGGAGGTAATGGTAGGTTCTTGAAGACTGCAGCTT 1316
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 1254 TCTCCATTAACTTGGATCTGAAGAGAGGAGGTAATGGTAGGTTCTTGAAGACTGCTGCCT 1313
Query 1317 ATGGTCACTTTGGAAGGGACGATGCTGATTTCACCTGGGAGGTAGTCAAGCCACTCAAGT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ATGGTCACTTTGGAAGGGACGATGCTGATTTCACCTGGGAGGTAGTCAAGCCACTCAAGT 1373
Query 1377 CTAACAAGGTCCAAGCTTGAAACCTGTTAGCCTCTGTTTCACTTGTGTTCAGAATCAGTC 1436
||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct 1374 CTAACAAGGTCCAAGCTTGAAACCTGTCAGCCTCTGTTTCACTTCTGTCCAGAATCAGTC 1433
Query 1437 TTGTTCTCTGTATTTTAAGCTCTTTGTGGGGTTTTTAGTTTCAACTCTGAGATGGGTTTA 1496
||||||||||||||||| ||||||| || | |||||||||||||||||||||||||||
Sbjct 1434 TTGTTCTCTGTATTTTAGGCTCTTTCTGCC-TCTTTAGTTTCAACTCTGAGATGGGTTTA 1492
Query 1497 TTCATTTTGTTTTCAACTTTGAAGAAAAAAGCTAAGCAGTTGGG--TTTATATAATTATT 1554
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1493 TTCATTTTGTTTTCAACTTTGAAGAAAAAAGCTAAGCAGCTGGGAATTTATATAATTATT 1552
Query 1555 TATATGGTATTC 1566
||||||||||||
Sbjct 1553 TATATGGTATTC 1564
> AT2G36880.1 | Symbols: MAT3 | methionine adenosyltransferase
3 | chr2:15479366-15481412 REVERSE LENGTH=1687
Length=1687
Score = 830 bits (449), Expect = 0.0
Identities = 946/1184 (80%), Gaps = 42/1184 (4%)
Strand=Plus/Plus
Query 213 AAATGGAATCTTTTTTGTTCACATCTGAATCCGTCAACGAGGGACATCCC-GACAAGCTC 271
|||||||| | || | || || |||||||||||||| || ||||| ||| ||||||||
Sbjct 158 AAATGGAAACGTTCCTATTTACCTCTGAATCCGTCAATGAAGGACA-CCCAGACAAGCTT 216
Query 272 TGTGATCAGATCTCCGACGCTATCCTCGATGCTTGTCTT-GAACAAGACCCTGAGAGCAA 330
||||| ||||| || || || ||||| |||||||| ||| || ||||| ||||| |||||
Sbjct 217 TGTGACCAGATTTCTGATGCGATCCTTGATGCTTG-CTTAGAGCAAGATCCTGAAAGCAA 275
Query 331 AGTTGCTTGTGAGACTTGTACCAAGACTAACATGGTCATGGTTTTTGGAGAAATCACCAC 390
||| || |||||||| || |||||||| |||||||| ||||| ||||| || ||||| ||
Sbjct 276 AGTGGCGTGTGAGACATGCACCAAGACCAACATGGTGATGGTGTTTGGTGAGATCACTAC 335
Query 391 CAAGGCTAATGTTGATTACGAGCAGATTGTTCGTA-AAACGTGCCGTGATATTGGATTCG 449
| || || ||||| || ||| |||||||| | | || ||| | || ||||| ||
Sbjct 336 CGCTGCGAAAGTTGACTATGAGAAGATTGTTAG-ATCCACTTGCAGGGAGATTGGTTTTA 394
Query 450 TATCTGCTGATGTTGGTCTAGATGCTGACAATTGTAAGGTTCTT-GTTAACATTGAGCAA 508
| ||||||||||||||||| || |||||||| || || ||| || |||||||||||||||
Sbjct 395 TCTCTGCTGATGTTGGTCTTGACGCTGACAAATGCAATGTT-TTGGTTAACATTGAGCAA 453
Query 509 CAGAGTCCTGACATTGCACAAGGTGTTCATGGTCATCTCACCAAGAAGCCAGAGGAGGTC 568
||||| ||||||||||| || ||||||||||||||| | ||||||||||| || || |
Sbjct 454 CAGAGCCCTGACATTGCTCAGGGTGTTCATGGTCATTTGACCAAGAAGCCTGAAGATATT 513
Query 569 GGAGCTGGTGATCAAGGTCACATGTTTGGGTATGCTACTGATGAGACTCCTGAGCTCATG 628
|| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 514 GGTGCTGGTGATCAGGGACATATGTTTGGGTATGCTACTGATGAGACTCCTGAGCTCATG 573
Query 629 CCGCTT-ACTCACGTTCTCGCTACTAAGCTTGGAGCTAAACTCACTGAAGTTCGCAAGAA 687
||| || ||||| || || || || |||||||| ||||| || |||||||| | |||||
Sbjct 574 CCG-TTGACTCATGTCCTAGCCACCAAGCTTGGTGCTAAGCTTACTGAAGTGAGGAAGAA 632
Query 688 TG-GAACTTGCCCGTGGTTGAGGCCTGACGGTAAGACTCAAGTCACTATTG-AGTACATC 745
|| ||||||| |||||||||||||| |||||||| |||||||| | || ||||||
Sbjct 633 CAAGA-CTTGCCCATGGTTGAGGCCTGATGGTAAGACACAAGTCAC-AGTGGAGTACAAG 690
Query 746 AACGAAAGCGGAGCCATGGTTCCTG-T-ACGTGTCCACACTGTTCTCATCTCAACACAGC 803
||||| | ||||| ||| |||| | | | | |||||||||||||| |||||||| || |
Sbjct 691 AACGATGGTGGAGCTATGATTCC-GATTA-GAGTCCACACTGTTCTTATCTCAACTCAAC 748
Query 804 ACGACGAGACTGTGACTAACGATGAGATCGCAGCTGATCTT-AAGGAGCATGTGATCAAG 862
| ||||| ||||| || || |||||||| || ||||| ||| ||||||||||||||||||
Sbjct 749 ATGACGAAACTGTCACCAATGATGAGATTGCTGCTGA-CTTGAAGGAGCATGTGATCAAG 807
Query 863 CCAGTGATCCCAGAGAAGTACCTTGATGAGAAAACCATCTTCCATCTC-AACCCATCTGG 921
|| || ||||| | ||||||||||| || || |||||||| || || |||||||||||
Sbjct 808 CCTGTTATCCCTGCTAAGTACCTTGACGATAACACCATCTTTCA-CTTGAACCCATCTGG 866
Query 922 TCGTTTTGTTATTGGAGGTCCTCATGGAGATGCAGGGCTTACCGGCCGTAAGATCATCAT 981
||||||||| || ||||| |||||||| ||||| || ||||| || | |||||||||||
Sbjct 867 TCGTTTTGTCATCGGAGGGCCTCATGGTGATGCTGGACTTACAGGGAGGAAGATCATCAT 926
Query 982 CGATACTTACGGTGGTTGGGGTGCACATGGAGGTGGTGCTTTCTCTGGGAAGGACCCAAC 1041
|| ||||| |||||||||||||| ||||| || ||||| ||||| || |||||||||||
Sbjct 927 TGACACTTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGAAAGGACCCAAC 986
Query 1042 CAAGGTTGACAGGAGTGGGGCTTACATCGTTAGGCAAGCAGCTAAGAGCATTGTAGCCAG 1101
|||||||||||| || || || || ||||| ||||| || || |||||| | ||||| ||
Sbjct 987 CAAGGTTGACAGAAGCGGTGCCTATATCGTGAGGCAGGCTGCAAAGAGCGTGGTAGC-AG 1045
Query 1102 TGGG-CTTGCGAGGCGG--GTCATTGTGCAAGTCTCCTATGCCATTGGTGTCCCTGAGCC 1158
|| || || | || | || || ||||| || || || ||||||||||||||||||||
Sbjct 1046 CAGGACTCGC-ACGCCGTTGT-ATCGTGCAGGTATCATACGCCATTGGTGTCCCTGAGCC 1103
Query 1159 ATTGTCTGTGTTTGTGGACAGTTATG-GAACCGGAAAGATACCAGACAAGGAGATTCTTG 1217
| || |||||||| |||| || || |||| | || ||||||||||| || ||||
Sbjct 1104 GCTCTCAGTGTTTGTTGACACCTACAAGA-CCGGGACCATCCCAGACAAGGATATCCTTG 1162
Query 1218 AGATTG-TGAAGGAGAGT-TTTGATTTCAGGCCAGGTATGATCTCCATTAAC-TTGGAT- 1273
| ||| | ||||| || ||||| |||||||| || ||||| |||||||| ||| |
Sbjct 1163 TG-TTGATCAAGGA-AGCATTTGACTTCAGGCCGGGAATGATGGCCATTAACCTTG-ACC 1219
Query 1274 TTGAAGAGAGGAGGTAA-TGGTAGGTTCTTGAAGACTGCAGCTTATGGTCACTTT-GGAA 1331
|| ||||| |||||||| | |||||| ||| || || || ||||| || ||| ||
Sbjct 1220 TT-AAGAGGGGAGGTAACTTC-AGGTTCCAGAAAACCGCTGCGTATGGCCA-TTTCGGGC 1276
Query 1332 GGGACGATGCTGATTTCACCTGGGAGGTAGTCAAGCCACTCAAG 1375
| || || |||| ||||| |||||||| |||||||| ||||||
Sbjct 1277 GTGATGACCCTGACTTCACTTGGGAGGTTGTCAAGCCGCTCAAG 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79818866550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5