BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479216
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17400.1 | Symbols: | F-box family protein | chr3:5954887-5... 616 2e-175
AT3G17620.1 | Symbols: | F-box and associated interaction doma... 479 3e-134
AT5G36200.1 | Symbols: | F-box and associated interaction doma... 233 2e-60
AT4G09790.1 | Symbols: | pseudogene of the F-box family protei... 231 8e-60
AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination e... 104 2e-21
> AT3G17400.1 | Symbols: | F-box family protein | chr3:5954887-5955444
FORWARD LENGTH=558
Length=558
Score = 616 bits (333), Expect = 2e-175
Identities = 394/424 (93%), Gaps = 2/424 (0%)
Strand=Plus/Plus
Query 1 ATGACGACAATGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTTCTGTCTAGGCTTCCG 60
|||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 ATGATGACATTGTCCGATCTTCCAAGTGATTTGGCAGAGGAGGTTCTGTCTAAGATTCCG 60
Query 61 GTGACATCTCTGAGAGGATTCCGATCTGCTTGCAAAAAGTGGAACACTTTATCCAAAGAT 120
||||||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct 61 GTGACATCTCTGAGAGGGGTCAGAGCTACTTGCAAAAAGTGGAACACTTTATCCAAAGAT 120
Query 121 CGGAGCTTTACAAGGAAACACCTTGCTCAAGCAAAAGCAGCGGCAGCAAGGGAGTTTATG 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CGGAGCTTTACAAGGAAACACCTTGCTCAAGCCAAAGCAGCGGCAGCAAGGGAGTTTATG 180
Query 181 GTGGTCATGGTTATGGATTCTCAGGTTTATTTGATGGGCATCAATCTCTGCAAGGGCGTT 240
||||||||||| ||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 181 GTGGTCATGGTGATGGATTTTCAGGTTTATTTGATGGGCATCAATCTCCATAAGGACGTT 240
Query 241 GACGAAACTATAAACCGTCAAGGTAAACTTATTAGCCTAGACGATTCCAATCAAGTCGAT 300
|||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GACGCAACTATAAACGGTCAAGGTAAACTTATTAGCTTAGACGATTCCAATCAAGTCGAT 300
Query 301 ATATCT-AGAGTCTATCACTGTGATGGTTTAGTCTTATGCATCCCAAAAGACTGCTCTAG 359
|||||| | ||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 301 ATATCTTAC-GTCTATCACTGCGACAGTTTAGTCTTATGCATCCCAAAAGACTGCGCTAG 359
Query 360 GCTCGTTGTTTGGAATCCGTATTGGGGCCAAACCTTGTGGTTCAAGCCCAGTAGTCTTCG 419
||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 360 GCTTGTTGTTTGGAATCCGTATTGGGGCCAAACCTTATGGTTCAAGCCCACTAGTCTTCG 419
Query 420 TCAT 423
|||
Sbjct 420 CCAT 423
> AT3G17620.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6026446-6027694 REVERSE LENGTH=1249
Length=1249
Score = 479 bits (259), Expect = 3e-134
Identities = 464/559 (83%), Gaps = 29/559 (5%)
Strand=Plus/Plus
Query 436 AAATCATG-CTGCAGCTACAAAATTTTGAGATTTGTTGAAGTTTCGTCTG-AG-AGTA-T 491
|||||| | || | |||||||| ||||| |||| |||| | ||| | | | || || | |
Sbjct 469 AAATCAAGCCTAC-GCTACAAAGTTTTGCGATTCGTTG-A-TTTTG-CCGAAGAAGAATT 524
Query 492 TGTTGAGTACGAAATCTACGAGTTAAACTCTAACTCATGGAGGGTTCTTGATGTCACTTC 551
||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 525 TGTTGAGTACGAAATATACGAGTTAAAGTCTAATTCATGGAGGGTTCTCGATGTCACTTC 584
Query 552 CGACTGGCATA-TACTGTTTTTTGCAC-ATGGCGTGACTCTCAAGAGAAATACTTATTGG 609
||||||| | | || ||||| ||||| | || || |||||||| ||||||||||||||
Sbjct 585 CGACTGGGA-AGTAGAGTTTTATGCACGA-GGTGTCTCTCTCAAGGGAAATACTTATTGG 642
Query 610 TTTGCTTTAGAGAAGTATCGAGAAAGAAG-A-TCAA-CGGTAGAGAT--TCCTGACTTCT 664
|||||| ||| |||| || ||||| || | | || | || | || | | | ||||
Sbjct 643 TTTGCTACAGACAAGTTTCCAGAAATCAGCAGT-AATC-TTATACATAGTGTTTATTTCT 700
Query 665 TGATATGTTTTGATTTTACAAAAGAAAGGTTTGGACCGCGTCTTCGTCTGCCGT-TTCGC 723
|| | |||||| |||||||| || || ||||| |||||||||| | |||||| || |
Sbjct 701 TGCTCTGTTTTAATTTTACATCGGAGAGATTTGGGCCGCGTCTTCATTTGCCGTGTT-AC 759
Query 724 TCTTAT-GATGAAGACACTGTGACTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTT 782
| ||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 760 -CCTATGGATGTAGATACTGTGAGTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTT 818
Query 783 ATTTCAGCGTGAGGACAACTTACATTTGGAGATTTGGGTTACGACTAAGATTGAGCCTGA 842
|||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 819 ATTTCAGCGTAAGGACAACTTACATATGGAGATTTGGGTTACGACTAAGATTGAACCTGA 878
Query 843 AGTGGTG-TCATGGAGCAAGTTGTTTTTAGCAGTGGATATGGAACCACTCACTGATTTTC 901
|| |||| | |||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 879 AGAGGTGATG-TGGAGCAAGTTGTTCTTAGCAGTGGATATGCAACCACTCACTGATTTT- 936
Query 902 AA-TTTGGAGTTACAGGAGG-GAGTTTCTTCATTGACGAAGAGAAGAAAGTCGCTGTAGT 959
|| |||||| || ||| | | ||||||| |||||||||||||||||||||| | ||||||
Sbjct 937 AAGTTTGGAATTGCAG-ATGCGAGTTTCATCATTGACGAAGAGAAGAAAGTTGTTGTAGT 995
Query 960 TTTTGATAAAGATAAAGAT 978
|||| |||||| ||||||
Sbjct 996 CTTTGCTAAAGACAAAGAT 1014
> AT5G36200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14244106-14246296 REVERSE LENGTH=1416
Length=1416
Score = 233 bits (126), Expect = 2e-60
Identities = 377/491 (77%), Gaps = 46/491 (9%)
Strand=Plus/Plus
Query 502 GAAATCTACGAGTTAAACTCTAAC-TCATGGAGGGTTCTT-GATGTCACTTC-CGACT-G 557
||||||||| | || |||||| | ||||||| ||| || || |||| || |||| |
Sbjct 568 GAAATCTACAACTTTAACTCT-GCTTCATGGAATGTT-TTCTATTTCAC-TCGTGACTGG 624
Query 558 GCATATACTGTTTTTTGCACATGGCGTGACTCTCAAGAGAAATACTTATTGGTTTGCTTT 617
| || ||| || || | || | |||||| |||||||| |||| ||||| |||||||| |
Sbjct 625 GAAT-TACCGTATTCT-CA-A-GGCGTGTCTCTCAAGGGAAACACTTACTGGTTTGC--T 678
Query 618 AGAGAAGTATCGAGA-AAGAAGATCAACG-GTAGA-GAT--TCCTGACTTCTTGATATGT 672
|||| || || | | |||| || || | |||| ||| ||||||||||||||| |||
Sbjct 679 AGAG-AG-ATAAATATAAGAGGA-GAAAGAATAGATGATCCTCCTGACTTCTTGATCTGT 735
Query 673 TTTGATTTTACAAAAGAAAGGTTTGGACCGCGTCTTCGTCTGCCGTTTCGCTCTTATGAT 732
||||| ||||||| ||| || |||||||||||||||| ||||| |||| |||| || |
Sbjct 736 TTTGACTTTACAACAGAGAGATTTGGACCGCGTCTTCACCTGCCCTTTCACTCTCATTCT 795
Query 733 GAAGACACTGTGACTCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTT-ATTTCAGCG 791
|| || ||||||| ||| ||||||||||||||||| || ||||| ||||| | || |||
Sbjct 796 GATGATACTGTGATTCTCTCTAGTGTTAGAGAAGAACAGCTTGCGGTGTTGA-TTAAGC- 853
Query 792 TGAGGACAACTTA--CA-TTTGGAGATTTGGGTTACGACTAAGATTGAGCCTGAAGT-GG 847
| | | ||| | |||||||||||||||||||||||||||||||| ||| ||
Sbjct 854 -G-CTTCGATTTATGGAGGATGGAGATTTGGGTTACGACTAAGATTGAGCCT-AAGGAGG 910
Query 848 TGTCATGGAGCAAGTTGTTTTTAGCAGTGGATATGGA-ACCACT---CACTGATTTTCAA 903
| ||||||| ||||||||| ||||| || |||||| | |||||| ||||| ||||||
Sbjct 911 TCTCATGGAACAAGTTGTTCTTAGCGGTTGATATG-ATACCACTGATCACTGCTTTTCAG 969
Query 904 TTTGGAGTTACAGGAGGGAGTTTCTTCATTGACGAAGA-GAAGAAAGTCG-CTGTAGTTT 961
||| | | | | | | ||||| ||||||||||| || |||||| |||| | || |||
Sbjct 970 TTTTG--T-A-ATGTG--AGTTTTTTCATTGACGA-GAAGAAGAATGTCGTC-GTGGTTC 1021
Query 962 TTGATAAAGAT 972
||| |||||||
Sbjct 1022 TTGGTAAAGAT 1032
> AT4G09790.1 | Symbols: | pseudogene of the F-box family protein
| chr4:6163414-6164655 REVERSE LENGTH=1242
Length=1242
Score = 231 bits (125), Expect = 8e-60
Identities = 387/506 (76%), Gaps = 48/506 (9%)
Strand=Plus/Plus
Query 500 ACGAAATCTACGAGTTAAACTCTAACT-CATGGAGGGTTCTTGATGTCACTTCC-GACTG 557
||||||| | || || || ||||| | |||||||||||||||||| ||| ||| |||||
Sbjct 543 ACGAAATTTTTGATTTGAAGTCTAA-TGCATGGAGGGTTCTTGATGCCAC-TCCTGACTG 600
Query 558 GCATATACTG-TT-TTTTGC-ACATGGCGTGACTCT-CAAGAGAAATACTTA-TTGGTTT 612
| | ||| | || || | | || ||||||| || | ||| |||||||||| || |||
Sbjct 601 GGAGATA--GATTCTTAT-CAACGTGGCGTGTCTTTGAAAG-GAAATACTTACTT-TTTT 655
Query 613 GCTTTAGAG-AAGTA-TCGAGAAAGAAGATCA--ACG--GT-A--G-AGA-TTC-CTGAC 660
||| |||| || || | | | ||| ||| | | || | | ||| ||| ||
Sbjct 656 GCTAAAGAGAAAATAGTGGTGGAAGGGGATGATGTTGTAGTGATTGAAGATTTCAAAGAT 715
Query 661 TTCTTGATATGTTTTGATTTTACAA---A-AGA---AAGGTTTGGACCGCGTCTTCGTCT 713
|| ||||| |||||||||||||||| | ||| || |||||||| ||||| | |||
Sbjct 716 TTTTTGATCTGTTTTGATTTTACAAGTGAGAGATTTAA--TTTGGACCACGTCTGCCTCT 773
Query 714 GCCGTTTCGCTCTTATGATGAAGACACTGTGACTCTTTCTAGTGTTAGAGAAGAGCAACT 773
||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||| ||
Sbjct 774 ACCGTTTCACTCTTACAATGGAGAGACCGTGACTCTTTCTAGTGTTAGAGAAGAGCAGCT 833
Query 774 TGCTGTGTTATTTCAGCGTGAGGACAACTTACATT--TGGAGATTTGGGTTACGACTAAG 831
|| ||||||| ||||| |||| |||| || ||||||| |||||||||| ||||
Sbjct 834 AGCAGTGTTATATCAGC---AGGA-TACTT-GTTTGATGGAGATATGGGTTACGAATAAG 888
Query 832 ATTGAGCCTGAAGTGGTGTCATGGAGCAAGTTGTTTTTAGCAGTGGATATGGAACCACTC 891
||||| || || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 889 ATTGAACCGGATGTGGTGTCATGGAGCAAGGTGTTTTTAGCAGTGGATATGGAACCACTC 948
Query 892 ACTGATT-TTCAAT----TTGGAGTTACAGGA-GGGAGTTTCTTCATTGACGAAGAGAAG 945
|||| || || || || | || | |||||||||||||||||||| |||||
Sbjct 949 ACTGGTTCTTTTATCCCGTTTGCTTTTTTCGCTGGGAGTTTCTTCATTGACGAGGAGAAA 1008
Query 946 AAAGTCGCTGTAGTTTTTGATAAAGA 971
||| ||||||| || || ||||||||
Sbjct 1009 AAAATCGCTGTGGTATTCGATAAAGA 1034
> AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination
effector family protein | chr1:21933021-21934216 FORWARD LENGTH=795
Length=795
Score = 104 bits (56), Expect = 2e-21
Identities = 215/287 (75%), Gaps = 30/287 (10%)
Strand=Plus/Plus
Query 687 AGAAAGGTTTGGACCGCGTCTTCGTCTGCCGTTTCGCTCTTATGATGAAGACACTGTGAC 746
|||||| |||||||||| ||||| ||||||| ||| |||||||||| | || |||||
Sbjct 351 AGAAAGATTTGGACCGCATCTTCCTCTGCCGGTTCACTCTTATGAT---G--AC-GTGAC 404
Query 747 TCTTTCTAGTGTTAGAGAAGAGCAACTTGCTGTGTTAT-T----TCAGCGTGA-GGACAA 800
||| ||| |||| ||| ||||||| |||||| |||||| | || || || || |
Sbjct 405 TCTATCTTGTGTCAGACAAGAGCAGCTTGCTTTGTTATATGGGAACAACGAGACAGATGA 464
Query 801 CTTACATTTGGAGATTTGGGTTACGACTAAGATTGAGCCTGAAGTG--GTGTCATGGAGC 858
|| || || ||||||||| |||| | | ||||||| || || || ||||| ||||||
Sbjct 465 -TT-CA-TTAGAGATTTGGATTACAAATCAGATTGATCC-CAA-TGCAGTGTCGTGGAGC 519
Query 859 AAGTTGTTTTTAG-CAGTGGATATGGAACCACTCACTGATTTT-CAATTTGGAGTTAC-A 915
| | ||||| | ||||||||| |||| || | || |||| ||| || || | |
Sbjct 520 -A--TATTTTT-GAAAGTGGATATCAAACCGCTTATTGGTTTTCCAA--AAGACTT-CGA 572
Query 916 -GGAGGGAGTTTCTTCATTGACGAAGAGAAGAAAGTCGCTGTAGTTT 961
||||| |||||||||||||||||||||||||||| ||| ||||
Sbjct 573 TCCTGGGAGCTTCTTCATTGACGAAGAGAAGAAAGTCGTTGTGGTTT 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5