BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479217
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17410.1 | Symbols: | Protein kinase superfamily protein | ... 2233 0.0
AT1G48210.1 | Symbols: | Protein kinase superfamily protein | ... 1219 0.0
AT2G47060.4 | Symbols: | Protein kinase superfamily protein | ... 449 3e-125
> AT3G17410.1 | Symbols: | Protein kinase superfamily protein
| chr3:5955909-5959106 FORWARD LENGTH=1480
Length=1480
Score = 2233 bits (1209), Expect = 0.0
Identities = 1364/1437 (95%), Gaps = 17/1437 (1%)
Strand=Plus/Plus
Query 1 AAAAGTCTGCGTTTCTTCACCAACCCTACTCGAACCAAGAGATAGA-AGAAACC-T-T-C 56
||||||||||||||||||||||||||||| |||||| | ||||||| ||||||| | | |
Sbjct 1 AAAAGTCTGCGTTTCTTCACCAACCCTACACGAACC-A-AGATAGATAGAAACCTTCTCC 58
Query 57 TTCTGCT--TTCTTCCATCATCGGAGAATTCGACTCTT-GTTT-ATC-TTTTGAGATTCT 111
|||| || ||||| ||||||||||||||||| |||| ||| || ||||||||||||
Sbjct 59 TTCTTCTGCTTCTTTTATCATCGGAGAATTCGAATCTTCTTTTCCTCTTTTTGAGATTCT 118
Query 112 CTAATTCTCGTTTTTGGAAAAGTTTCGTGTGTTAGAGAAGCGTAATGAGCTGTTTTGGCT 171
|||||| || |||||||| ||||||||||| |||||||||||||| |||| ||||| |
Sbjct 119 CTAATTATC-CTTTTGGAAGAGTTTCGTGTGAGAGAGAAGCGTAATGGGCTGCTTTGGTT 177
Query 172 G-T-T-GTGGTGGTGAGGATTTCCGTAGAGTTGCTGAAACTGGACCAAAGCCTGTGCATA 228
| | | |||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 178 GTTGTGGTGGTGGTGAGGATTTCCGTAGAGTTTCTGAAACTGGACCAAAGCCAGTGCATA 237
Query 229 ACACAGGAGGTTACAATGGAGGTCATCATCAAAGGGCAGATCCTCCCAAGAACCTTCCAG 288
|||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 238 ACACTGGAGGTTACAATGGAGGTCACCATCAAAGGGCAGATCCACCCAAAAACCTTCCAG 297
Query 289 TTATTCAGATGCAGCCTATCTCTGTTGCGGCCATTCCAGCTGATGAATTGAGGGATATAA 348
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TCATTCAGATGCAGCCTATCTCTGTTGCGGCCATTCCAGCTGATGAATTGAGGGATATAA 357
Query 349 CGGATAACTATGGTGGAAAGTCCTTGATTGGTGAGGGTTCATATGGAAGAGTGTTTTATG 408
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 358 CGGATAACTATGGTTCAAAGTCCTTGATTGGTGAGGGTTCATATGGAAGAGTCTTTTATG 417
Query 409 GTATTCTTAAAAATGGTAAGGCAGCTGCCATTAAGAAACTGGATTCTAGTAAGCAACCAG 468
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTATTCTTAAAAGTGGTAAAGCAGCTGCCATTAAGAAACTGGATTCTAGTAAGCAACCAG 477
Query 469 ATCAAGAATTTCTTGCCCAGGTATCAATGGTTTCGAGATTGCGACAAGACAATGTTGTTG 528
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 ATCAAGAATTTCTCGCCCAGGTATCAATGGTTTCGAGATTGCGACAAGAAAATGTTGTTG 537
Query 529 CGCTTCTGGGCTATTGTGTTGATGGCCCACTCCGTGTTCTTGCTTATGAATATGCTCCTA 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CGCTTCTGGGCTATTGTGTTGATGGCCCACTCCGTGTTCTTGCTTATGAATATGCTCCTA 597
Query 589 ATGGATCTCTTCATGATATTCTTCATGGTCGAAAAGGTGTTAAAGGAGCACAGCCAGGTC 648
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 598 ATGGATCTCTTCATGATATTCTTCATGGTCGAAAAGGTGTTAAAGGGGCACAGCCAGGTC 657
Query 649 CTGTTCTGTCGTGGCACCAGAGAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTGTTCTGTCGTGGCACCAGAGAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGT 717
Query 709 ACTTGCATGAGAAGGCGAACCCTCATGTTATCCACAGAGACATCAAATCCAGCAATGTAC 768
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACTTGCATGAGAAGGCAAACCCTCATGTTATCCACAGAGACATCAAATCCAGCAATGTAC 777
Query 769 TTCTGTTCGACGATGATGTTGCCAAGATTGCTGATTTTGATCTGTCCAACCAAGCCCCTG 828
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 778 TTCTGTTCGATGATGATGTTGCCAAGATTGCTGATTTTGATTTGTCCAACCAAGCCCCTG 837
Query 829 ACATGGCTGCGCGCCTTCACTCAACCCGTGTGCTCGGAACCTTTGGCTATCACGCTCCAG 888
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACATGGCTGCTCGCCTTCACTCAACCCGTGTGCTCGGAACCTTTGGCTATCACGCTCCAG 897
Query 889 AGTATGCAATGACGGGGACGTTGAGCACAAAGAGTGATGTTTATAGTTTTGGCGTTGTTC 948
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 898 AGTATGCAATGACGGGGACGTTGAGCACAAAGAGTGATGTCTATAGTTTTGGCGTTGTTC 957
Query 949 TGCTGGAGCTCCTCACAGGTCGTAAACCAGTTGATCATACCTTACCACGTGGACAGCAGA 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGCTGGAGCTCCTCACAGGTCGTAAACCAGTTGATCATACCTTACCACGTGGACAGCAGA 1017
Query 1009 GTCTTGTGACATGGGCAACCCCTAAACTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACG 1068
|| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1018 GTGTCGTGACATGGGCAACCCCTAAATTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACG 1077
Query 1069 CAAGACTAAACGGAGAATATCCTCCCAAAGCTGTTGCTAAGCTAGCTGCGGTTGCTGCAC 1128
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1078 CAAGACTAAACGGAGAATATCCTCCCAAAGCTGTTGCTAAGCTGGCTGCGGTAGCTGCAC 1137
Query 1129 TGTGTGTGCAATATGAGGCAGACTTCAGGCCAAACATGAGCATAGTGGTGAAGGCTCTTC 1188
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1138 TGTGTGTGCAATATGAGGCAGACTTCAGGCCTAACATGAGCATAGTGGTGAAGGCTCTTC 1197
Query 1189 AGCCATTGCTCAATCCTCCTCGCTCTGCTCCTCAGACACCGCACAGGAACCCGTATTGAT 1248
|||| ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 1198 AGCCGTTGCTCAATCCTCCTCGTTCTGCTCCCCAGACTCCACACAGGAACCCGTATTGAT 1257
Query 1249 ATGCTCCAGCCTGATTTCACCCTTTATGATGATCACTATTTCATTTGTTTTTGTTTGAAT 1308
|||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1258 ATGCTCTAGTCTGATATCACCCTTTATGATCATCACTATTTCATTTGTTTTTGTTTGAAT 1317
Query 1309 CCGATTTGTGTAAATTTGTGAAATAGGCTTTTATTTCTCTCATAAAACCC-TGCCACTTC 1367
|||||||||||||||||||||||||||| |||||| |||||||||| ||| |||||||||
Sbjct 1318 CCGATTTGTGTAAATTTGTGAAATAGGCGTTTATT-CTCTCATAAACCCCCTGCCACTTC 1376
Query 1368 ACCGAAAATCTTACTTGAAAAGACCTGAATGTTACTCTATTTTTATATTATTTCATG 1424
|| |||||||||||||| |||||||||||||||||| ||||| ||||||||||||||
Sbjct 1377 ACTGAAAATCTTACTTGGAAAGACCTGAATGTTACTGTATTTCTATATTATTTCATG 1433
> AT1G48210.1 | Symbols: | Protein kinase superfamily protein
| chr1:17798431-17801987 FORWARD LENGTH=1468
Length=1468
Score = 1219 bits (660), Expect = 0.0
Identities = 971/1121 (87%), Gaps = 22/1121 (2%)
Strand=Plus/Plus
Query 140 GTGTTAGAGAA--GCGTAATGAGCTGTTTTGGCTGTTGTGGTG-GTGAGGATTTCCGTAG 196
|||| |||||| | ||||||||||||||||| || ||||| | |||||||||| || |
Sbjct 170 GTGTGAGAGAAGGGTGTAATGAGCTGTTTTGGTTGGTGTGG-GAGTGAGGATTTTCGCA- 227
Query 197 A-GTTGCTGAAACTGGACCAAAGCCTGTGCATAACACAGGAGGTTACAATGGAGGTCATC 255
| | | |||| ||||| |||| ||| | ||||||| ||| ||||||||||||||| || |
Sbjct 228 ACGCTACTGACACTGGCCCAAGGCCAGCGCATAACCCAGCAGGTTACAATGGAGGCCA-C 286
Query 256 -ATCAAAGGGCAGATCCTCCCAAGAACCTTCCAGTTATTCAGATGCAGCCTATCTCTGTT 314
| ||||| || ||||| |||| ||||| || ||||||| ||||||||||| |||||
Sbjct 287 TACCAAAGAGCTGATCCACCCATGAACCAGCCTGTTATTCCCATGCAGCCTATTTCTGTA 346
Query 315 GCGGCCATTCCAGCT-GATGAATTGAGGGATATAACGGATAACTATGGTGGAAAGTCCTT 373
| |||||||||| | ||||| |||| |||||||| |||||||||||| |||| ||||
Sbjct 347 CCAGCCATTCCAG-TGGATGAGCTGAGAGATATAACTGATAACTATGGTTCAAAGACCTT 405
Query 374 GATTGGTGAGGGTTCATATGGAAGAGTGTTTTATGGTATTCTTAAAAATGGTAAG-GCAG 432
||| || |||||||| ||||||||||||||||||||| ||||||||| ||| | ||||
Sbjct 406 GATCGGCGAGGGTTCTTATGGAAGAGTGTTTTATGGTGTTCTTAAAAGCGGT-GGTGCAG 464
Query 433 CTGCCATTAAGAAACTGGATTCTAGTAAGCAACCAGATCAAGAATTTCTTGCCCAGGTAT 492
||||||| |||||||| || ||||||||||| |||||||||||||||||| ||||| |||
Sbjct 465 CTGCCATCAAGAAACTTGACTCTAGTAAGCAGCCAGATCAAGAATTTCTTTCCCAGATAT 524
Query 493 CAATGGTTTCGAGATTGCGACAAGACAATGTTGTTGCGCTTCTGGGCTATTGTGTTGATG 552
|||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||
Sbjct 525 CAATGGTTTCGAGATTGCGACATGACAATGTTACTGCACTTATGGGCTATTGTGTTGATG 584
Query 553 GCCCACTCCGTGTTCTTGCTTATGAATATGCTCCTAATGGATCTCTTCATGATATTCTTC 612
|||| |||||||||||||||||||||| ||||||||| |||||||||||||||| |||||
Sbjct 585 GCCCTCTCCGTGTTCTTGCTTATGAATTTGCTCCTAAAGGATCTCTTCATGATACTCTTC 644
Query 613 ATGGTC-GAAAAGGTGTTAAAGGAGCAC--AGCCAGGTCCTGTTCTGTCGTGGCACCAGA 669
|||| | |||||||| |||||||||| || |||||||||| || ||||||| ||||
Sbjct 645 ATGG-CAAAAAAGGTGCCAAAGGAGCACTTAG--AGGTCCTGTTATGACGTGGCAACAGA 701
Query 670 GAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGTACTTGCATGAGAAGGCGAACC 729
|||||||||| || ||||||||||| |||||||| ||||||||||||||||||| || ||
Sbjct 702 GAGTCAAAATCGCCGTTGGTGCGGCCAGAGGACTTGAGTACTTGCATGAGAAGGTGAGCC 761
Query 730 CTCATGTTATCCACAGAGACATCAAATCCAGCAATGTACTTCTGTTCGACGATGATGTTG 789
|||| ||||||||| ||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 762 CTCAGGTTATCCACCGAGACATCAAATCCAGCAACGTACTTCTGTTTGATGATGATGTTG 821
Query 790 CCAAGATTGCTGATTTTGATCTGTCCAACCAAGCCCCTGACATGGCTGCGCGCCTTCACT 849
|||| |||| ||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 822 CCAAAATTGGTGATTTTGATCTGTCTGATCAAGCCCCTGACATGGCTGCTCGCCTTCACT 881
Query 850 CAACCCGTGTGCTCGGAACCTTTGGCTATCACGCTCCAGAGTATGCAATGACGGGGACGT 909
|||| |||||||| |||||||||||||| ||||||||||| ||||||||||| || ||||
Sbjct 882 CAACTCGTGTGCTAGGAACCTTTGGCTACCACGCTCCAGAATATGCAATGACAGGAACGT 941
Query 910 TGAGCACAAAGAGTGATGTTTATAGTTTTGGCGTTGTTCTGCTGGAGCTCCTCACAGGTC 969
||||| ||||||| ||||| || ||||||||||||||||||||||||||||| || ||||
Sbjct 942 TGAGCTCAAAGAGCGATGTGTACAGTTTTGGCGTTGTTCTGCTGGAGCTCCTAACTGGTC 1001
Query 970 GTAAACCAGTTGATCATACCTTACCACGTGGACAGCAGAGTCTTGTGACATGGGCAACCC 1029
|||||||||| |||||||||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 1002 GTAAACCAGTCGATCATACCTTACCGCGTGGACAACAAAGTCTAGTGACATGGGCAACCC 1061
Query 1030 CTAAACTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACGCAAGACTAAACGGAGAATATC 1089
||||||| ||||||||||| |||||||| || ||||| ||||||||| |||||| || |
Sbjct 1062 CTAAACTAAGTGAAGACAAAGTGAAGCAATGCGTTGATGCAAGACTACTCGGAGAGTACC 1121
Query 1090 CTCCCAAAGCTGTTG-CTAAGCTAGCTGCGGTTGCTGCACTGTGTGTGCAATATGAGGCA 1148
||||||||||||||| | ||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1122 CTCCCAAAGCTGTTGGC-AAGCTAGCTGCAGTGGCTGCACTCTGTGTGCAATATGAGGCA 1180
Query 1149 GACTTCAGGCCAAACATGAGCATAGTGGTGAAGGCTCTTCAGCCA-TTGCTCAATCCTCC 1207
| ||||| |||||||||||||| ||||||||||| ||||| || || | || |||||
Sbjct 1181 AATTTCAGACCAAACATGAGCATTGTGGTGAAGGCACTTCAACCTCTTT-TAAACCCTCC 1239
Query 1208 TCGCTCTGCTCCTCAGACACCGCACAGGAACCCGTATTGAT 1248
||| |||||||| ||||| || || |||||||| || ||||
Sbjct 1240 TCGTTCTGCTCCGCAGACTCCACATAGGAACCCCTACTGAT 1280
> AT2G47060.4 | Symbols: | Protein kinase superfamily protein
| chr2:19332904-19334971 REVERSE LENGTH=1500
Length=1500
Score = 449 bits (243), Expect = 3e-125
Identities = 547/690 (79%), Gaps = 36/690 (5%)
Strand=Plus/Plus
Query 438 ATTAAGAAA-CTGGATTCTAGTAAGCAACCAGATCAA-GAATTTCTTGCCCAGGTATCAA 495
||||| ||| ||||||||| || || || || ||| ||||| ||||| ||||| || |
Sbjct 392 ATTAA-AAAGTTGGATTCTAACAAACAGCCTGA-CAATGAATTCCTTGCTCAGGTTTCCA 449
Query 496 TGGTTTCGA-GATTGCGACAAGACAA-TGTTGTTGC-GCTTCTGGGCTATTGTGTTGATG 552
||||||| | | || ||| || || | ||||| | ||||| ||||| ||||||||||
Sbjct 450 TGGTTTCTAGGCTT-AAACATGATAACT-TTGTT-CAACTTCTTGGCTACTGTGTTGATG 506
Query 553 GCCCACTC-CGTG-TTCTTGCTTATGAATATGCTC-CTAATGGATCTCTTCATGATATTC 609
| | || || | | ||| ||||||||| ||| | |||||||||||||||||||||||
Sbjct 507 G-GAATTCACG-GATACTTTCTTATGAATTTGC-CAATAATGGATCTCTTCATGATATTC 563
Query 610 TTCATGGTCGAAAAGGTGTTAAAGGAGCACAGCCAGGTCCTGTTCT-GTCGTGGCACCAG 668
||||||| |||||||||| ||||||||||||||||||||||| || ||||||| | ||
Sbjct 564 TTCATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCTGT-CTTGTCGTGGTATCA- 621
Query 669 A-GAGTCAAAATTGCTGTTGGTGCGGCTAGAGGACTCGAGTACTTGCATGAGAAGGCGAA 727
| ||||||||||||| ||||| || || ||||| || |||||||||||||| || || ||
Sbjct 622 ACGAGTCAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTACTTGCATGAAAAAGCTAA 681
Query 728 CCCTCATGTTATCCACAGAGACATCAAATCCAGCAATGTACTTCTGTTCGACGATGATGT 787
||||| | || ||| | ||||| |||||||||||||| || || || || ||||||||
Sbjct 682 TCCTCACATCATTCACCGTGACATTAAATCCAGCAATGTCCTCCTCTTTGAAGATGATGT 741
Query 788 TGCCAAGATTGCTGATTTTGATCTGTCCAACCAAGCCCCTGACATGGCTGCGCGCCTTCA 847
|||||| |||||||| |||||||| || || ||||| ||||| ||||| || ||||||||
Sbjct 742 TGCCAAAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGATATGGCAGCTCGCCTTCA 801
Query 848 CTCAACCCGTGTGCTCGGAACCTTTGGCTATCACGCTCCAGAGTATGCAATGACGGGG-A 906
|| ||||| || || || || ||||| || || || || || ||||||||||| ||| |
Sbjct 802 TTCCACCCGAGTTCTTGGGACTTTTGGTTACCATGCCCCTGAATATGCAATGACCGGGCA 861
Query 907 CGTTGA--GCACAAAGAGTGATGTTTATAGTTTTGGCGTTGTTCTG-CTGGAGCTCCTCA 963
||| | || ||| ||||||||| || || ||||| ||||| || || || || || |
Sbjct 862 -GTTAAATGC-CAA-GAGTGATGTCTACAGCTTTGGAGTTGT-CTTACTCGAACTTCTTA 917
Query 964 CAGGTCGTAAA-CCAGTTGATCATAC-CTTACC-ACGTGGACAGCAGAGTCTT-GTGACA 1019
||||||| ||| || |||||||||| || ||| | | || ||||| ||| || || |||
Sbjct 918 CAGGTCG-AAAGCCTGTTGATCATAGACT-ACCCA-GAGGCCAGCAAAGT-TTAGTCACA 973
Query 1020 TGGGCAACCCCTAAACTGAGTGAAGACAAGGTGAAGCAGTGTGTTGACGCAAGACTAAAC 1079
||||| || ||||||||||||||||||||||| || || || ||||| ||||||||
Sbjct 974 TGGGCTACACCTAAACTGAGTGAAGACAAGGTTAAACAATGCGTTGATGCAAGACTCGGT 1033
Query 1080 GGAGAATATCCTCCCAAAGCTGTTGCTAAG 1109
|| || || ||||| |||||||||||||||
Sbjct 1034 GGCGATTACCCTCCAAAAGCTGTTGCTAAG 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70180361910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5