BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479218
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17420.1 | Symbols: GPK1 | glyoxysomal protein kinase 1 | ch... 2772 0.0
> AT3G17420.1 | Symbols: GPK1 | glyoxysomal protein kinase 1 |
chr3:5959212-5962179 REVERSE LENGTH=1915
Length=1915
Score = 2772 bits (1501), Expect = 0.0
Identities = 1763/1882 (94%), Gaps = 47/1882 (2%)
Strand=Plus/Plus
Query 26 CTCACCAT-TGGCAACCCTACAAAGATCTCTCTCTCAAGATTTCTGAAAATGGAAATATA 84
|||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 45 CTCACC-TATGGAAACCCTACAAAGATCTCTCTCTCAAGATTTCTGAAAATGGATATATA 103
Query 85 ATCTCACTGATTT-TCtt-ttttttt-ttCTTGTTTCGTTTTCTCTATGTTTTGTGGGTG 141
||||||||||||| | || ||||||| ||||||||||||||||| |||| ||| ||| ||
Sbjct 104 ATCTCACTGATTTGT-TTCTTTTTTTGTTCTTGTTTCGTTTTCTATATG-TTTATGGATG 161
Query 142 AGCTGTAGTCTCCATCTCCCACCCGGACATAGAAAGAAAAAATAGAGGAAATTTGTTCAC 201
|| |||||| ||||||||||| ||||| |||||||||| ||| ||||||||||||||||
Sbjct 162 AGTTGTAGTTTCCATCTCCCAGCCGGATATAGAAAGAAGAAACAGAGGAAATTTGTTCAT 221
Query 202 AAAGGAGGTATTGCGTTA-AT-TAGA-A-AAGTCTCTGTGAAATATGGCATCTCAGCTAA 257
|||||||||| | || || | | | |||||||||||||||||| ||||||||||||
Sbjct 222 AAAGGAGGTA---C-ATATATACACATACAAGTCTCTGTGAAATATGACATCTCAGCTAA 277
Query 258 AACGAACTCTAACCAAGAGATACGGTGTTCTTGAACTGTGGGAGATCATAGTGATTGCTC 317
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 AACGAACTTTAACCAAGAGATACGGTGTTCTTGAACTGTGGGAGATCATAGTGATTGCTC 337
Query 318 TATTTGCAGCGTTCATAGTAATCCTTGTCATTTCAGTATGGCTCAGCTTCCGTAAAAAGT 377
| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 338 TCTTTGCAGCCTTCATAGTAATCCTTGTCCTTTCAGTTTGGCTCAGCTTCCGTAAAAAGT 397
Query 378 CCAAAAGATCTAATGCTACAACGCTTCCTGTAACTCAAAGCCCTCGCTTTACTGAAGAAA 437
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 398 CCAAAAGATCTAATGCTACAACGCTTCCTGTAACTCAAAGCCCTCGCTTTACCGAAGAAA 457
Query 438 TCAAAGAAATAAGTGTTGATCATGTTTCATCTAACAACAATGGTACTTCTTACCCAACTC 497
| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 458 TAAAAGAAATAAGTGTTGATCATGGTTCATCTAACAACAATGGTACTTCTTACCAAACTC 517
Query 498 TTGATGAGAAATTCGTTGAGGACATCGAGAATGGCGATAAGTTTTCTGGTTCTTTGGAGA 557
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 518 TTGATGAGAAATTCGTTGAGGACATCGAGAATGGCGATAAGTTCTCTGGTTCTTTGGAGA 577
Query 558 AAAAACCCGC-GGTTGGGTCACATTTGCCTCCTAGTACTCCTTTAACAACAGCTCCTTCA 616
|||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 578 AAAAACCC-CTGGTTGGGTCACATTTGCCTCCTAGTACTCCTTCAACAACAGCTCCTTCA 636
Query 617 CCTCTCTTGGGTCTGCCTGAGGTTTCTCACATTGGTTGGGGTCATTGGTTCACTCTTCGT 676
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 637 CCTCTCTTGGGTCTTCCTGAGGTTTCTCACATTGGTTGGGGTCATTGGTTCACTCTCCGT 696
Query 677 GACCTTCAACTCGCGACTAATCATTTCTCAAAGGAGAATATCATCGGTGATGGTGGATAC 736
||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||
Sbjct 697 GACCTTCAACTCGCGACTAATCATTTCTCCAAGGAGAGTATCATCGGAGATGGTGGTTAT 756
Query 737 GGAGTTGTTTACCATGGAACTTTGACTAATAAAACCCCTGTGGCTGTCAAAAAGCTGCTC 796
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 757 GGAGTTGTTTACCATGGAACTTTGACTAACAAAACCCCTGTGGCTGTCAAAAAGTTGCTC 816
Query 797 AACAATCCAGGGCAAGCTGATAAAGATTTCAGAGTTGAGGTGGAAGCTATAGGACATGTG 856
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 AACAATCCAGGTCAAGCTGATAAAGATTTCAGAGTTGAGGTGGAAGCTATAGGACATGTC 876
Query 857 CGGCATAAGAACTTAGTTCGGCTTCTTGGATATTGCGTTGAAGGAACACATAGGATGCTG 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CGGCATAAGAACTTAGTTCGGCTTCTTGGATATTGCGTTGAAGGAACACATAGGATGCTG 936
Query 917 GTTTATGAGTACATGAACAATGGGAACTTAGAGCAATGGCTTCATGGAGACATGAATCAC 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 937 GTTTATGAGTACATGAACAATGGGAACTTAGAGCAATGGCTTCATGGAGACATGATTCAC 996
Query 977 AAAGGGCACCTCACTTGGGAAGCTCGGATCAAAGTTCTTGTTGGCACTGCAAAAGCGCTG 1036
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 997 AAAGGGCATCTCACTTGGGAGGCTCGCATCAAAGTTCTTGTTGGCACTGCAAAGGCACTG 1056
Query 1037 GCTTATCTTCACGAAGCTATTGAGCCGAAAGTGGTGCATAGAGACATAAAATCGAGCAAT 1096
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1057 GCTTATCTTCACGAAGCTATTGAGCCAAAAGTGGTGCATAGAGACATAAAATCAAGCAAT 1116
Query 1097 ATACTGATGGATGACAACTTTGACGCAAAGTTATCTGATTTTGGTCTTGCTAAATTGCTT 1156
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1117 ATACTGATGGATGACAACTTTGACGCAAAGTTATCTGATTTCGGTCTTGCTAAATTGCTT 1176
Query 1157 GGAGCTGATTCAAGTTACGTCAGTACTCGAGTTATGGGTACATTCGGGTATGTCGCGCCT 1216
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1177 GGAGCTGATTCAAATTACGTCAGTACTCGAGTTATGGGTACATTCGGGTATGTCGCACCT 1236
Query 1217 GAATATGCTAACTCTGGTCTCCTCAACGAAAAGAGCGACGTGTACAGCTATGGTGTTGTT 1276
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1237 GAATACGCTAACTCTGGTCTCCTAAACGAAAAGAGCGATGTGTACAGCTATGGTGTTGTT 1296
Query 1277 CTCTTGGAAGCTATTACTGGAAGGTATCCAGTGGATTATGCGCGGCCTAAAGAAGAGGTG 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 CTCTTGGAAGCTATTACTGGAAGGTATCCAGTGGATTATGCGCGGCCTAAAGAAGAGGTG 1356
Query 1337 CATATGGTGGAGTGGTTAAAGCTGATGGTTCAACAGAAACAGTTTGAGGAAGTGGTGGAT 1396
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1357 CATATGGTGGAGTGGTTAAAGCTAATGGTTCAACAGAAACAGTTTGAGGAAGTGGTGGAT 1416
Query 1397 AAAGAGCTTGAGATCAAACCATCAACTAGCGAACTTAAAAGAGCGCTTTTGACAGCTTTG 1456
||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||
Sbjct 1417 AAAGAGCTTGAGATCAAACCAACAACAAGCGAACTTAAACGAGCACTTTTGACAGCTTTA 1476
Query 1457 AGATGTGTTGATCCTGATGCAGACAAGAGGCCAAAGATGAGTCAAGTGGTTCGAATGCTT 1516
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1477 AGATGCGTTGATCCTGATGCAGACAAGAGGCCAAAGATGAGTCAAGTGGCTCGAATGCTT 1536
Query 1517 GAATCTGATGAATACCCTGTGATGCCTAGAGAGGAACGAAGAAGAAGGAGAAATCAAAAC 1576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1537 GAATCTGATGAATACCCTGTGATGCCTAGAGAGGAACGAAGAAGAAGGAGAAATCAGAAC 1596
Query 1577 GCAGAGACGCATAGAGAAAGCACAGACACGAATAAAGATAATGATATAATAACAGATGCA 1636
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1597 GCAGAGACGCATAGAGAAAGCACAGACACGAATAAAGATAATGATATAACAACAGATGCA 1656
Query 1637 AAGATTTGAGCAAGGAACAGAAACATGGACCCTTCTTTATGACTT-----TTA------- 1684
|||||||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 1657 AAGATTTGAGCAAGAAACAGAAACATGGACCCTCCTTTATGACTTAAGGGTTAAAAACAA 1716
Query 1685 G-A----TT-------CTTTGGAGATTGTTTAGATTCTTTACTGTGTCTATAAGTTAATT 1732
| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 GGAAAACTTTTAGATTCTTTGGAGATTGTTTAGATTCTTTACTGTGTCTATAAGTTAATT 1776
Query 1733 ATGTGATATATATAGATACAGAGAAGAACACGATTTGTTTCTTTTGTCTGGAGGAGGAGA 1792
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 1777 ATGTGATATATATAGATACAGAGAAGAACAAGACTTGTTTCTTTTGTCTGGAGAAGGAGA 1836
Query 1793 GCTTTGTTGCACTGTCTTTTTTAATACCTTCATACAGAGTCAGTTACAGACATATATTTA 1852
| |||||||||| | ||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct 1837 GATTTGTTGCACA-T-TTTATTA---CCTTCATACAGAGTCAGTTACAGACATAT-TTTA 1890
Query 1853 CAAAATGAATTTTATTTGGATC 1874
||| || |||||||||||||||
Sbjct 1891 CAAGATAAATTTTATTTGGATC 1912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92770607160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5