BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479219
Length=1659
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17430.1 | Symbols: | Nucleotide-sugar transporter family p... 2612 0.0
AT1G48230.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1107 0.0
> AT3G17430.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr3:5965923-5969233 FORWARD LENGTH=1775
Length=1775
Score = 2612 bits (1414), Expect = 0.0
Identities = 1546/1609 (96%), Gaps = 12/1609 (1%)
Strand=Plus/Plus
Query 1 AAACTACTGTAGCTAGCTATCTCCAGTTCTACGTTCTTTCTATTAATATAATCTTCTTCT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 7 AAACTACTGTAGCTAGCTATCTCCAGTTCTACGTTCTTTCTATTAATAAAATCTTCTTCT 66
Query 61 TCTTCTCTGTTTCGTTGATT-CCA--ATAGAAGCTCTCACGAATTCGTCGTCGTATCATC 117
|||||||| ||| ||||||| ||| || ||| |||||||||||||||||||||||||||
Sbjct 67 TCTTCTCTTTTTGGTTGATTCCCACCATTGAACCTCTCACGAATTCGTCGTCGTATCATC 126
Query 118 AGATTCTGCTGGAGTTCCTGAATTTGTTTAATCAGATAGTGTTGTTCGTCTTGATCTATC 177
|||||||||| || | ||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 127 AGATTCTGCTCGAATAGCTGAATTTGTTTAATCAGATA--G-TGTTCCTCTTGATCTATC 183
Query 178 GCTACTAGATTTGTTGTGCGTTTGTTGTCTTTGCTGATAATTTCCAGTTTCTCGGCTTAT 237
|||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||
Sbjct 184 GCTACTAGATTTGTTGTGCGTTTGTTTTCTTTGCTGATAATTTGCAAATTCTCTGCTTAT 243
Query 238 GATCTCGAGGTAATGGCCACGGAGCCTTTGCACCTGGTTTTTATACTGCTGTGTTTTGGT 297
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 244 GATCTCGAGGTAATGGCCACAGAGCCTTTGCACCTGGTTTTTATACTGCCGTGTTTTGGT 303
Query 298 ATTGGTGCAGTGACAAGAAATTGATTGTCAAAGGAAGATTATTTGCTTTTTCTCTGAAGT 357
|||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 304 ATTGGTGCAGTG-TAAGAAATTGATTGTCAAAGGAA-AATATTTGCTTTTTCTCTGAGGA 361
Query 358 GAGGGAACGAGGAAGATGGCAAAGATGATAAACAAGACGCTTGTACTAACTTATATCTAC 417
||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 362 GAGGGGACGAGTAAGATGGCAAAGATGATAAACAAGACGCTTGTATTAACTTATATCTAC 421
Query 418 TTGCTGATCTACATTATACTTTCTTCTGGAGTTATACTGTACAATAAGTGGGTTTTATCC 477
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 422 TTGCTGATCTACATTATACTTTCTTCAGGAGTTATACTGTACAATAAGTGGGTTTTATCC 481
Query 478 CCAAAATACTTCAATTTTCCACTTCCTATAACGCTGACAATGATCCATATGGGGTTTGCT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CCAAAATACTTCAATTTTCCACTTCCTATAACGCTGACAATGATCCATATGGGGTTTGCT 541
Query 538 GGATTCGTGGCTTTCCTTCTTATTCGCGTCTTCAAGGTTGTTGCTCCGGTTAAAATGACA 597
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 542 GGATTCGTGGCTTTCCTTCTTATTCGTGTCTTCAAGGTTGTAGCTCCGGTTAAAATGACA 601
Query 598 TTTGAAATATATGCAACCTGTGTGGTACCTATAAGCGCATTTTTTGCATCAAGTCTCTGG 657
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 602 TTTGAAATATATGCAACCTGTGTGGTACCTATAAGTGCATTCTTTGCATCAAGTCTCTGG 661
Query 658 TTTGGCAATACTGCATATTTGCACATTTCTGTTGCCTTCATTCAGATGCTGAAAGCTCTA 717
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TTTGGAAATACTGCATATTTGCACATTTCTGTTGCCTTCATTCAGATGCTGAAAGCTCTA 721
Query 718 ATGCCAGTAGCGACATTTATCATGGCAGTTGTGTGTGGCACTGACAAACCAAGGTGCGAC 777
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 722 ATGCCAGTAGCGACATTTATCATGGCAGTTGTTTGTGGCACTGACAAACCAAGGTGTGAT 781
Query 778 GTGTTCTCGAACATGTTGCTGGTCAGTGTTGGAGTTGTGATATCCTCTTATGGGGAAATT 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 782 GTGTTCTCGAACATGTTGCTGGTCAGTGTTGGAGTTGTGATATCTTCTTATGGGGAAATT 841
Query 838 CATTTCAATATAGTTGGCACAGTCTATCAGGTGACAGGCATCTTTGCTGAAGCACTTAGA 897
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CATTTCAACATAGTTGGCACAGTCTATCAGGTGACAGGCATCTTTGCTGAAGCACTTAGA 901
Query 898 CTGGTGCTAACTCAAGTTCTTCTCCAGAAGAAGGGTTTGACATTGAACCCTATTACCAGC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTGGTGCTAACTCAAGTTCTTCTCCAGAAGAAGGGTTTGACATTGAACCCTATTACCAGC 961
Query 958 TTGTATTACATAGCTCCCTGCAGTTTTGTTTTTCTGGCCTTGCCTTGGTATGTGTTAGAG 1017
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 962 TTGTATTACATAGCTCCCTGCAGTTTTGTTTTTCTGGCCTTACCTTGGTATGTGTTAGAG 1021
Query 1018 AAACCCACAATGGAAGTTTCACAGATCCAATTCAACTTCTGGATATTTTTCTCCAATGCC 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 AAACCCACAATGGAAGTTTCACAGATCCAATTCAACTTCTGGATATTTTTCTCCAATGCT 1081
Query 1078 CTATGTGCTCTTGCCTTGAACTTCTCCATATTCTTAGTAATCGGGAGAACAGGTGCAGTA 1137
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1082 CTATGTGCTCTTGCCTTGAACTTCTCCATATTCTTAGTCATTGGGAGAACAGGTGCAGTA 1141
Query 1138 ACCATCCGGGTGGCTGGTGTTCTCAAAGACTGGATTCTTATAGCCCTCTCAACTGTCATT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1142 ACCATCCGGGTGGCTGGTGTTCTCAAAGACTGGATTCTTATAGCCCTCTCAACCGTCATT 1201
Query 1198 TTCCCCGAGTCCACAATCACTGGGTTGAATATCACTGGATACGCAATAGCGCTATGTGGT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TTCCCCGAGTCCACAATCACTGGGTTGAATATCACTGGATACGCAATAGCGCTATGTGGT 1261
Query 1258 GTCGTTATGTACAATTACATAAAAGTAAGGGATGTGAAGGCGTCTCAACCAACTGCTGAC 1317
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1262 GTCGTCATGTACAATTACATAAAAGTAAGGGATGTGAAGGCGTCTCAACCAACAGCTGAC 1321
Query 1318 AGTCTTCCAGATCGAATAAATAAGGAGTATAAGATGGAGAAGAAGTCTTCGGATAAATTC 1377
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1322 AGTCTTCCAGATCGAATCAATAAGGAGTACAAGATGGAGAAGAAGTCTTCGGATAAATTC 1381
Query 1378 AATCCTAATGACAGTGTGGAGATCCCAAGAGTAGGAGGCGAGGTAAACGACGAGGAAGCC 1437
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1382 AATCCTAACGACAGTGTGGAGATCCCAAGAGTAGGAGGAGAGGTAAACGACGAGGAAGCC 1441
Query 1438 CCTTTGATCACGTCCCGGTTGTCTCATATTGGTCGGACGCAGCTCGGAAATCACGCAGCT 1497
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1442 CCTTTGATCACATCCCGGTTGTCTCATATTGGTCGGACGCAGCTCGGAAATCACGCTGCT 1501
Query 1498 TAAGATGCTGGTATAAACGTATAATAGACATTTTGCTTCCCAATTCGTTTTTTCTGTTAC 1557
|||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1502 TAAGATGCCGGTATAAACGTATAATAGACATTTTGCTTCCCAATTCGTTATTT-TGTTAC 1560
Query 1558 TTAGaa-aaaaaa-TCTTTGAA-CCaaaaaaaGAAGTTGCAGCACCATC 1603
|||||| |||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 1561 TTAGAAGAAAAAAATCTTTGAAACCAAACAAAGAAGTTGCAGCACCATC 1609
Score = 99.0 bits (53), Expect = 1e-19
Identities = 55/56 (98%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1604 AAAATTCCAAATTTATTATGAGATAGAATAGCGGAGATTATTACCAATGATTAGCT 1659
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 AAAATTCCAAATTTGTTATGAGATAGAATAGCGGAGATTATTACCAATGATTAGCT 1693
> AT1G48230.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:17805761-17808885 FORWARD LENGTH=1760
Length=1760
Score = 1107 bits (599), Expect = 0.0
Identities = 850/971 (88%), Gaps = 18/971 (2%)
Strand=Plus/Plus
Query 373 ATGGCAAAGATGATAAACAAGACGCTTGTACTAACTTATATCTACTTGCTGATCTACATT 432
||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 376 ATGGCGAAGATGATAAACAAGACGCTTGTACTTACATATATCTACTTACTAATCTACATT 435
Query 433 ATACTTTCTTCTGGAGTTATACTGTACAATAAGTGGGTTTTATCCCCAAAATACTTCAAT 492
|| |||||||||||||||||||| ||||| ||||||||| |||| || ||||||||||||
Sbjct 436 ATTCTTTCTTCTGGAGTTATACTATACAACAAGTGGGTTCTATCTCCGAAATACTTCAAT 495
Query 493 TTTCCACTTCCTATAACGCTGACAATGATCCATATGGGGTTTGCTGGATTCGTGGCTTTC 552
||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||
Sbjct 496 TTTCCACTTCCTATAACATTGACAATGATCCATATGGGATTTTCTGGATTCGTGGCTTTC 555
Query 553 CTTCTTATTCGCGTCTTCAAGGTTGT-TGCTCCGGTTAAAATGACATTT-GAAATATATG 610
||||||||||| || ||||||||||| | |||| ||||||||||| ||| ||||||||||
Sbjct 556 CTTCTTATTCGGGTATTCAAGGTTGTCT-CTCCTGTTAAAATGAC-TTTCGAAATATATG 613
Query 611 CAACCTGTGTGGTACCTATAAGCGCATTTTTTGCATCAAGTCTCTGGTTTGGCAATACTG 670
|| |||||||| |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 614 TGACATGTGTGGTGCCTATAAGCGCATTCTTTGCATCCAGTCTCTGGTTTGGAAATACTG 673
Query 671 CATATTTGCACATTTCTGTTGCCTTCATTCAGATGCTGAAAGCTCTAATGCCAGTAGCGA 730
|||||||||||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| |
Sbjct 674 CATATTTGCACATTTCAGTTGCTTTCATACAGATGCTCAAAGCACTAATGCCGGTAGCAA 733
Query 731 CATTTATCATGGCAGTTGTGTGTGGCACTGACAAACCAAGGTGCGACGTGTTC-TCGAAC 789
||||| | ||||| ||||| |||||||| |||||| ||||||| ||||||||| | ||||
Sbjct 734 CATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGCAAGGTGTGACGTGTTCAT-GAAC 792
Query 790 ATGTTGCTGGTCAGTGTTGGAGTTGTGA-TATCCTCTTATGGGGAAATTCATTTCAATAT 848
||| ||||||| |||||||||||||| | ||||||| |||||||||||| |||||||| |
Sbjct 793 ATGGTGCTGGTGAGTGTTGGAGTTGT-AGTATCCTCCTATGGGGAAATTAATTTCAATGT 851
Query 849 AGTTGGCACAGTCTATCAGGTGACAGGCATCTTTGCTGAAGCACTTAGACTGGTGCTAAC 908
| | ||||| ||||| ||||| | || || |||||||||||||||||||||||||||||
Sbjct 852 AATCGGCACGGTCTACCAGGTCATGGGAATATTTGCTGAAGCACTTAGACTGGTGCTAAC 911
Query 909 TCAAGTTCTTCTCCAGAAGAAGGGTTTGACATTGAACCCTATT-ACCAGCTTGTATTACA 967
|||||||||||| ||||| ||||| ||||| |||||||| | | |||||||| || || |
Sbjct 912 TCAAGTTCTTCTTCAGAAAAAGGGCTTGACGTTGAACCC-AGTCACCAGCTTATACTATA 970
Query 968 TAGCTCCCTGCAGTTTTGTTTTTCTGGCCTTGCCTTGGTATGTGTTAGAGAAACCCACA- 1026
||||||| ||||| |||||||| ||| ||||||||||||||||| | |||||||| | |
Sbjct 971 TAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTGGTATGTGCTGGAGAAACCAA-AT 1029
Query 1027 ATGGAAGTTTCACAGATCCAATTCAACTTCTGGATATTTTTCTCCAATGCCCTATGTGCT 1086
|| || || || ||||||||||||||||||||||| |||||||| || || || || ||
Sbjct 1030 ATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCTTTTTCTCAAACGCTCTCTGCGCA 1089
Query 1087 CTTGCCTTGAACTTCTCCATATTCTTAGTAATCGGGAGAACAGGTGCAGTAACCATCCGG 1146
|||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct 1090 CTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAAGAACAGGCGCTGTAACAATCCGG 1149
Query 1147 GTGGCTGGTGTTCTCAAAGACTGGATTCTTATAGCCCTCTCAACTGTCAT-TTTCCCCGA 1205
|| ||||| |||||||||||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct 1150 GTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCCTCTCCACTGTCATATTTCCT-GA 1208
Query 1206 GTCCACAATCACTGGGTTGAATATCACTGGATACGCAATAGCGCTATGTGGTGTCGTTAT 1265
|||||||||||||||| ||||||| |||||||| || |||||||| |||||||| || ||
Sbjct 1209 GTCCACAATCACTGGGCTGAATATAACTGGATATGCTATAGCGCTCTGTGGTGTTGTAAT 1268
Query 1266 GTACAATTACATAAAAGT-AAGGGATGTGAAGGCG-TCTCAACCAACTGCTGACAGTCTT 1323
|||||||||||||||| | |||| |||| || ||| | ||||||||| ||||||| ||
Sbjct 1269 GTACAATTACATAAAAATCAAGG-ATGTAAAAGCGAT-TCAACCAACCACTGACAGCCTC 1326
Query 1324 CCAGATCGAAT 1334
|||||||||||
Sbjct 1327 CCAGATCGAAT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81977489985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5