BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479220
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 ... 1842 0.0
AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 ... 928 0.0
> AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13
| chr3:5969565-5972502 REVERSE LENGTH=1366
Length=1366
Score = 1842 bits (997), Expect = 0.0
Identities = 1117/1171 (95%), Gaps = 24/1171 (2%)
Strand=Plus/Plus
Query 18 TCTCCGGCGATATGGCTTCAAATCTTCCTATGAGCCCTCAATTAGAGCAGATCCATGGCG 77
|||||||||| |||||||| ||||| || |||||||||||||| ||||||||||||||||
Sbjct 202 TCTCCGGCGACATGGCTTCTAATCTCCCCATGAGCCCTCAATTGGAGCAGATCCATGGCG 261
Query 78 AAATCCGTGACCATTTCCGAGCCCTCGCGAATGGTTTCCAGAGGTTGGATAAGATCAAGG 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 262 AAATCCGTGACCATTTCCGAGCCCTCGCGAATGGTTTCCAGAGGTTGGATAAGATTAAGG 321
Query 138 ATTCAACTAGACAAAGCAAACAACTTGAAGAACTTACTGAGAAGATGAGAGAATGTAAAA 197
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 322 ATTCAACTAGACAAAGCAAACAACTTGAAGAACTTACTGACAAGATGAGAGAGTGTAAAA 381
Query 198 GGTTGGTCAAGGAGTTCGACCGTGAACTCAAGGATGAGGAAGCTAGAAATTCTCCTGAAG 257
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GATTGGTCAAAGAGTTCGACCGTGAACTCAAGGATGAGGAAGCTAGAAATTCTCCTGAAG 441
Query 258 TAAATAAGCAATTGAACGATGAGAAACAATCTATGATCAAGGAGCTCAATTCTTACGTTG 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TAAATAAGCAATTGAACGATGAGAAACAATCTATGATCAAGGAGCTCAATTCTTACGTTG 501
Query 318 CACTAAGAAAAACGTATATGAGTACCCTTGGCAACAAGAAAGTTGAGCTTTTCGATATGG 377
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 502 CTCTAAGAAAAACGTATATGAGTACCCTTGGCAACAAGAAAGTTGAGCTTTTTGATATGG 561
Query 378 GAGCTGGAGTTAGTGGCGAACCTACAGCTGAGGAAAATGTTCAAGTGGCTTCATCTATGT 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 GAGCTGGAGTTAGTGGCGAACCTACAGCTGAGGAAAATGTTCAAGTGGCTTCATCTATGT 621
Query 438 CAAACCAGGAGCTTGTTGATGCTGGAATGAAAAGAATGGATGAGACTGATCAGGCCATTG 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 CAAACCAGGAGCTTGTTGATGCTGGAATGAAAAGAATGGATGAGACTGATCAGGCCATTG 681
Query 498 AGCGCTCAAAACAGGTTGTAGAACAAACACTCGAAGTTGGAACTCAAACTGCAGCTAATT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 AGCGCTCAAAACAGGTTGTAGAACAAACACTCGAAGTTGGAACTCAAACTGCAGCTAATT 741
Query 558 TAAAGGGACAGACGGATCAAATGGGACGCGTTGTTAACCACTTGGACACTATTCAATTCT 617
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 742 TAAAGGGACAGACGGATCAAATGGGACGCGTAGTTAACCACTTGGACACTATTCAATTCT 801
Query 618 CAATCAAGAAAGCCTCCCAGCTGGTGAAAGAGATAGGGAGACAGGTGGCTACCGATAAAT 677
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CAATCAAGAAGGCCTCCCAGCTGGTGAAAGAGATAGGGAGACAGGTGGCTACCGATAAAT 861
Query 678 GCATAATGGGGTTCCTGTTTCTCATTGTATGTGGTGTAGTAGCCATTATCATAGTGAAGA 737
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 862 GCATAATGGGGTTCCTGTTTCTCATTGTATGCGGTGTAGTAGCCATAATCATAGTGAAGA 921
Query 738 TCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCTCCAGCGCAAT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 TCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCTCCAGCGCAAT 981
Query 798 CGAGGAAACTGTTGTACTTGAGGAATCAAGACTACATGTGAGATTATAAATCTCTATTTG 857
||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 982 CGAGGAAGCTATTGTACTTGAGGAATCAAGACTACATGTGAGAATATAAATCTCTATTTG 1041
Query 858 TATATTTATTCACGAGGAATGAGGAAATTGCATCTTGAGGTTCGATATTTCCTTTTAATT 917
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1042 TATATTTATTCACGAGGAATGAGGAAATTGCATCTTGAGGTTCGATATTTCCTTCTAATT 1101
Query 918 TGTTAACACTCCATTTCATGGATG--AGAGAGAGGGTTTGGGGCTTGTTGGCATTGTGTG 975
|||||||| ||||||||||||||| |||||||||||||| | |||||||||||||||||
Sbjct 1102 TGTTAACAATCCATTTCATGGATGTTAGAGAGAGGGTTTGTG-CTTGTTGGCATTGTGTG 1160
Query 976 CTTTGATAGTTG-CAGAGTCTTGGAGATGTTTAT------GTTCTTTTGCTT-TTT-AAC 1026
|||||||||||| | ||| ||||| ||||||||| |||||||| ||| ||| |||
Sbjct 1161 CTTTGATAGTTGAC-GAGGCTTGGGGATGTTTATCTTCATGTTCTTTTACTTGTTTTAAC 1219
Query 1027 CCAATT-GTTTGAATCTGGGTTTTGATTGGAGGGTGTGTAAAttttcggcttttgtct-- 1083
||| || |||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct 1220 CCA-TTCGTTTGAATCTGGGTTT-GATTGGAGGGTGTGTATATTTTCAGCTTTTGTCTCT 1277
Query 1084 atttctttttc-tt-tt-tgttttGTAGCAACTCATCACTTCTTTTGTATAAAATTCAGA 1140
||||||||||| || || | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1278 ATTTCTTTTTCCTTCTTCTTTTTTGTAGCAACTTATCACTTCTTTTGTATAAAATTCAGA 1337
Query 1141 CCA-TGTTATACTCTCTCTCACGTTCTCATT 1170
||| |||||||||||||| ||||| |||||
Sbjct 1338 CCAATGTTATACTCTCTC--ACGTTTTCATT 1366
> AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12
| chr1:17809007-17811895 REVERSE LENGTH=1253
Length=1253
Score = 928 bits (502), Expect = 0.0
Identities = 711/812 (88%), Gaps = 14/812 (2%)
Strand=Plus/Plus
Query 20 TCCGGC-GATATGGCTTC-AAATCTTCCTATGAGCCCTCAATTAGAGCAGATCCATGGCG 77
|||||| |||||||| || ||| | || ||||||||||| || |||||||| || || |
Sbjct 230 TCCGGCAGATATGGCGTCTGAAT-TGCCGATGAGCCCTCATTTGGAGCAGATTCACGGAG 288
Query 78 AAATCCGTGACCATTTCCGAGCCCTCGCGAATGGTTTCCAGAGGTTGGATAAGATCAAGG 137
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 289 AAATCCGTGACCATTTCCGAGCCCTCGCGAATGGCTTCCAGAGGTTGGATAAGATCAAGG 348
Query 138 ATTCAACTAGACAAAGCAAACAACTTGAAGAACTTACTGAGAAGATGAGAGAATGTAAAA 197
|||| | |||||||||||| ||||| ||||||||| |||||||||||||||| |||||||
Sbjct 349 ATTCTAGTAGACAAAGCAAGCAACTCGAAGAACTTGCTGAGAAGATGAGAGACTGTAAAA 408
Query 198 GGTTGGTCAAGGAGTTCGACCGTGAACTCAAGGATGAGGAAGCTAGAAATTCTCCTGAAG 257
||||||| |||||||| || ||||||||||| |||| ||||||| ||||||||||| |||
Sbjct 409 GGTTGGTTAAGGAGTTTGATCGTGAACTCAAAGATGGGGAAGCTCGAAATTCTCCTCAAG 468
Query 258 TAAATAAGCAATTGAACGATGAGAAACAATCTATGATCAAGGAGCTCAATTCTTACGTTG 317
|||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| ||||
Sbjct 469 TAAATAAGCAATTGAATGATGAGAAACAATCTATGATTAAGGAACTCAACTCTTATGTTG 528
Query 318 CACTAAGAAAAACGTA-TATGAGTACCCTTGGCAACAAGAAAGTTGAGCTTTTCGATA-T 375
|||||||||||||||| | ||| ||| || ||||||||||||||||| ||||| |||| |
Sbjct 529 CACTAAGAAAAACGTACT-TGAATACACTCGGCAACAAGAAAGTTGAACTTTTTGATACT 587
Query 376 GGGAGCTGGAGTTAGTGGCGAACCTACAGCTGAGGAAAATGTTCAAGTGGCTTCATCTAT 435
|| ||||||||| || || ||||| |||||||| ||||| || ||| |||||||| | ||
Sbjct 588 GG-AGCTGGAGTCAGCGGTGAACCCACAGCTGAAGAAAACGTCCAAATGGCTTCAACAAT 646
Query 436 GTCAAACCAGGAGCTTGTTGATGCTGGAATGAAAAGAATGGATGAGACTGATCAGGCCAT 495
||||||||| |||||||| ||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct 647 GTCAAACCAAGAGCTTGTCGATGCTGGAATGAAAAGGATGGACGAGACTGACCAGGCTAT 706
Query 496 TGAGCGCTCAAAACAGGTTGTAGAA-CAAACACTCGAAGTTGGAACTCAAACTGCAGCTA 554
||| || || ||||||||||| | | || |||||||||||||| |||||||||||| |||
Sbjct 707 TGAACGTTCTAAACAGGTTGT-GCATCAGACACTCGAAGTTGGCACTCAAACTGCATCTA 765
Query 555 ATTTAAAGGGACAGACGGATCAAATGGGACGCGTTGTTAACCACTTGGACACTATTCAAT 614
| |||||||||||||||||||||||||| |||||||| ||| || | ||||| ||||| |
Sbjct 766 ACTTAAAGGGACAGACGGATCAAATGGGCCGCGTTGTAAACGACCTAGACACAATTCAGT 825
Query 615 TCTCAATCAAGAAAGCCTCCCAGCTGGTGAAAGAGATAGGGAGACAGGTGGCTACCGATA 674
|||| | |||||||| || |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 826 TCTCTCTTAAGAAAGCTTCGCAGCTGGTGAAAGAGATAGGAAGACAGGTAGCTACAGATA 885
Query 675 AATGCATAATGGGGTTCCTGTTTCTCATTGTATGTGGTGT-AGTAGCCATTATCATAGTG 733
|||||||||||| |||||||||||| ||||| |||||||| | |||| || ||||| |||
Sbjct 886 AATGCATAATGGCGTTCCTGTTTCTGATTGTCTGTGGTGTTA-TAGCTATAATCATTGTG 944
Query 734 AAGATCGTGAATCCGAATAACAAAGACATTAGGGACATCCCAGGATTAGCTCCTCCAGCG 793
||||||||||| || || ||||||||||| || |||||||| ||| ||||||||||||||
Sbjct 945 AAGATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCCTCCAGCG 1004
Query 794 CAATCGAGGAAA-CTGTTGTACTTGAG-GAAT 823
|||||||| ||| || |||||||| || ||||
Sbjct 1005 CAATCGAG-AAAGCTCTTGTACTTCAGAGAAT 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5