BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479224
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17465.1 | Symbols: RPL3P | ribosomal protein L3 plastid | c... 1908 0.0
> AT3G17465.1 | Symbols: RPL3P | ribosomal protein L3 plastid |
chr3:5977817-5979652 REVERSE LENGTH=1297
Length=1297
Score = 1908 bits (1033), Expect = 0.0
Identities = 1202/1280 (94%), Gaps = 26/1280 (2%)
Strand=Plus/Plus
Query 1 AGTTCCGGTTTCTGCATCTCTTTCCTTCATC---T----TTTAGCCATTGAAGTTAGCTT 53
||||| ||||||||||||||| |||||| || | |||||||||||||| | ||||
Sbjct 9 AGTTCTGGTTTCTGCATCTCTCTCCTTCTTCGTTTAGACTTTAGCCATTGAAGGTCGCTT 68
Query 54 CGATTCGAAATCATGGCGGCCGTACCGAGAGGCCTCATTTCTCGCATCAATCAGTTTTTA 113
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||
Sbjct 69 CGATTCGAAATCATGGCGGCCGTACCGAGAGGCCTCCTTTCTCGAATCAATCAGTTTCTA 128
Query 114 TCAGTCCGGTCTATAACTTCTTCATCCTCTGAATCTCTACCTCA-T-T-GTAGCTTCTTT 170
||| | |||||||||||| ||||||||||||||||||| ||||| | | |||||||||||
Sbjct 129 TCAATACGGTCTATAACTCCTTCATCCTCTGAATCTCTTCCTCATTGTAGTAGCTTCTTT 188
Query 171 CTGC-TCCGACGATTCAGCTCCGATACTGGGTCGGTCGACGGTGGTGGATCTGATATTAT 229
|| | ||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 189 CT-CATCCGACGATTCAGCTCCGATACTGGGTTGATGGACGGTGGTGGATCTGATATTAT 247
Query 230 TGGGGCTCCGAATAGAATCATCGAGGCGAAACAAGGTGAGATGTCTCAG-AGCT-CTAGA 287
||||||| || ||||||| |||||||||||||||||||||||| || || | | ||
Sbjct 248 CGGGGCTCAGACCCGAATCATTGAGGCGAAACAAGGTGAGATGTCT-AGTAGATCCAAG- 305
Query 288 AGGACTGGGATCATCGCCGTCAAGTGTGGGATGACTGCGCTCTGGGACAAATGGGGAGCT 347
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 306 AGGACTGGGATCATCGCGGTTAAGTGTGGGATGACTGCGCTCTGGGACAAATGGGGAAAG 365
Query 348 AGGGTTCCGATATCTATTCTTTGGGTTGATGACAACATTGTCTCTCAGGTTAAAACTGTT 407
||| ||||||| |||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 366 AGGATTCCGATTTCTATTCTTTGGGTTGATGATAATATCGTCTCTCAGGTTAAAACTGTT 425
Query 408 GAGAAAGAAGGGATTTTTGCGTTACAGATCGGATGTGGGCAAAAGAAACCGAAGCATTTG 467
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GAGAAAGAAGGCATTTTTGCGTTACAGATCGGATGTGGGCAAAAGAAACCGAAGCATTTG 485
Query 468 TCAAAGGCTGTGGTGGGGCATTTCAGAGCACAAGGTGTGCCGTTAAAGAGGAAGTTGAGG 527
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TCAAAAGCTGTGGTGGGGCATTTCAGAGCACAAGGTGTGCCGTTAAAGAGGAAGTTGAGG 545
Query 528 GAATTTCCTGTGACTGAAGACGCTCTTCTTCCTGTTGGTACTTCACTCGGAGTCCGCCAT 587
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 546 GAATTTCCTGTGACTGAAGACGCTCTTCTTCCTGTTGGTACTTCACTCGGTGTCCGCCAT 605
Query 588 TTTGTTCCGGGACAGTATGTTGATGTCACTGGGATCACTCGAGGAAAAGGTTTTCAGGGA 647
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TTTGTTCCGGGACAGTACGTTGATGTCACTGGGATCACTCGAGGAAAAGGTTTTCAGGGA 665
Query 648 TGCATGAAAAGACATGGTTTCAGTGGAATGCCGGGATCACATGGTGCTTCATTGTCCCAT 707
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 666 TGCATGAAAAGACATGGTTTCAGTGGAATGCCGGCATCACATGGTGCTTCATTGTCCCAT 725
Query 708 CGAAGCGGTGGTTCCACAGGGCAAAGAGATGCTCCTGGAAAGGTGTTCAAGGGaaaaaaa 767
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 726 CGAAGCGGGGGTTCCACAGGGCAAAGAGATGCTCCTGGAAAGGTGTTCAAGGGCAGAAAG 785
Query 768 aTGGCTGGGAGAATGGGTGCAGATCAGAGGACAGTAAAGAACGTTTGGGTTTACAAGATC 827
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 786 ATGGCTGGGAGAATGGGTGCAGATCAGAGGACAGTAAAGAACGTTTGGGTCTACAAGATC 845
Query 828 GATCCTGCGAGGAACCTCATGTGGGTGAGAGGACAAGTTCCTGGTGCAGAAGGAAACTTT 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GATCCTGCGAGGAACCTCATGTGGGTGAGAGGACAAGTTCCTGGTGCAGAAGGAAACTTT 905
Query 888 GTGTTCATAAAAGATGCATGGTGCAAGAAACCAGACATCTCAAAGCTTCCATTTCCAACT 947
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 906 GTGTTCATAAAAGATGCATGGTGCAAGAAACCAGACATCTCAAAGCTTCCGTTTCCAACT 965
Query 948 TACTTAGCTCCGGAAGATGAAGATCCATCAGAATTAGAACCGTTGGTTGCAGATCTTGGA 1007
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TACTTAGCTCCAGAAGATGAAGATCCATCAGAATTAGAACCGTTGGTTGCAGATCTTGGA 1025
Query 1008 GAAGTTGACCCATTTATGTTGGCAGAGTGATGAAAACAACATGATCTTGATCTTCATTTT 1067
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1026 GAAGTTGACCCATTTATGTTGGCAGAGTGATGAAAACAGCATGATCTTGATCTTTATTTG 1085
Query 1068 GGCTTTTTACATTAATGGGAGACCAGAAAGAAGCTGTGGAAGTG--G-AATCACAGAGCT 1124
||||||| ||| | || |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1086 GGCTTTT-ACAATGATTAGAGACCAGAAAGAAGCTGTGGAAGTGAAGGAATCACAGAGCT 1144
Query 1125 AAAGCTTTTTGCAGATGAAATTAATTGTCTTTT-CTTATTTTAGTTGTTTGGATGTATGA 1183
||||||||||||||||||| || | ||||||| ||||||||||||||||||||||||||
Sbjct 1145 AAAGCTTTTTGCAGATGAA-TT--T-GTCTTTTTCTTATTTTAGTTGTTTGGATGTATGA 1200
Query 1184 TTTGAAAACGATTAAATAGAGGAATTTAGGCTTGCTCGCATTTGTTATATCACAATGCTT 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTTGAAAACGATTAAATAGAGGAATTTAGGCTTGCTCGCATTTGTTATATCACAATGCTT 1260
Query 1244 AAAGAGTTTGCAATAAGCAA 1263
|| |||||||||||||||||
Sbjct 1261 AA-GAGTTTGCAATAAGCAA 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5