BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479225
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17470.1 | Symbols: ATCRSH, CRSH | Ca2+-activated RelA/spot ... 2988 0.0
> AT3G17470.1 | Symbols: ATCRSH, CRSH | Ca2+-activated RelA/spot
homolog | chr3:5979834-5982115 FORWARD LENGTH=1933
Length=1933
Score = 2988 bits (1618), Expect = 0.0
Identities = 1752/1818 (96%), Gaps = 3/1818 (0%)
Strand=Plus/Plus
Query 1 GCCTCAA-TTTCAAAATCAAATCTCAAATTCTCAAATGTCTGTGATTCGTCCTTCTCCGA 59
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCCTCAATTTTCAAAATC-AATCTCAAATTCTCAAATGTCTGTGATTCGTCCTTCTCCGA 59
Query 60 TTCCAATTCCAAGATGCAGATCCCAGTTGCTGCATCGTCGTCTTTACTCGATCCAATTGA 119
|||||||||| ||||||||||| ||| | ||||||||||||||||| ||||| |||||||
Sbjct 60 TTCCAATTCCGAGATGCAGATCTCAGGTACTGCATCGTCGTCTTTATTCGATTCAATTGA 119
Query 120 TTCAGAGACGACGTCGACGGTGGAATCCGAGGTCAGAGGTGGAGGATACTGCGGTTGAAT 179
||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 120 TTCAGCGACGACGTCGACGGTGGAATCCGAGGTCGGAGGTGGAGGATACTGCGATTGAAT 179
Query 180 CGACGGCTCGGTCTCCGGAGGCAGCGGGAGGGAAAATGGTTGTGGAGCTAGTTGGAGCTT 239
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 180 CGACGGCTCGGTCTCCGGAGGCAGCGGGAGGGAAAATGGTGGTGGAGCTTGTTGGAGCTT 239
Query 240 TCAACGAAGTAACGGAGAGGATGAATTCGGTTTGGTTGTCAACGTCTTCGTCTAGGTTAC 299
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 TCAACGAAGTAACGGAGAGGATGAATTCGGTTTGGTTGTCGACGTCTTCGTCTAGGTTAC 299
Query 300 TCTTTAAAGCTCTGAAGCTCTCAATTCCGATTTTACAGTCTCTTCCTCTTGCCTCTGATG 359
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTTTAAAGCTCTCAAGCTCTCGATTCCGATTTTACAGTCTCTTCCTCTTGCCTCTGATG 359
Query 360 GTCGCTCTCCTCTTTCTAAGGCTCTTTCACTCTCTATCATACTCGCAGATCTCCAGATGG 419
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 360 GTCGCTCTCCTCTTTCTAAGGCTCTCTCACTCTCTATCATTCTCGCAGATCTCCAGATGG 419
Query 420 ATGCGGAAGTTATATCGGCGAGTATATTGAGTGAGGTGGTGGAGGCGAATGCGATATCTA 479
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 ATGCAGAAGTTATCTCGGCGAGTATATTGAGTGAGGTGGTGGACGCGAATGCGATATCTA 479
Query 480 TATATGAAGTTAGAGACCAGATTGGTACTGGAACTGCTCATCTGCTTCATGAGATTTTTC 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TATATGAAGTTAGAGACCATATTGGTACTGGAACTGCTCATCTGCTTCATGAGATTTTTC 539
Query 540 GTGTTAAGAACATCCCTTTTAAAGTTGATGTCTTGGACGATGAAACTGCTGCTTCATTGA 599
|||| ||||| || ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 540 GTGTGAAGAATATTCCTTTTAAAGTTGATGTGTTAGACGATGAAACTGCTGCTTCATTGA 599
Query 600 GAAAGTTCTATTTAACCTACTATGACATCAGAGCTGTGACCATGGATTTGGTTTCAAAGC 659
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 GAAAGTTCTATTTAACCTACTATGACATCAGAGCTGTGATTATGGATTTGGTTTCAAAGC 659
Query 660 TTGATGAGATGAGGCATTTGGATCACTTGCCAAGGTATCGCCAGCAGATTCTCTCTCTCG 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 TTGATGAGATGAGGCATTTGGATCACTTGCCAAGGTATCGCCAGCAGATTCTCTCTCTTG 719
Query 720 AAGTGTTGAAGATTTATTCTCCTTTAGCTCATGCGGTTGGGGCTAATCACCTGTCTCTTG 779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 720 AAGTGTTGAAGATTTATTCTCCTTTAGCTCATGCGGTGGGGGCTAATCACCTGTCACTTG 779
Query 780 AGCTCGAGGACATATCTTTCCGTTATCTTTTCCCGTGTTCGTATCTATACTTAGATTCAT 839
||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 780 AGCTCGAGGACATCTCTTTCCGTTATCTTTTTCCGTGTTCGTATATATACTTAGATTCAT 839
Query 840 GGTTAAGAGGTCACGAGAACGGGTCTAAACCGTTGATAGACATGTACAAAGAGCAGCTTC 899
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 840 GGTTAAGAGGTCACGAGAACGGGTCTAAACCGTTGATAGACGTGTACAAAGAGCAGCTTC 899
Query 900 ATCAGTCTTTGAAGGCTGATTTGGTTTTGGCTGAAATGGTGGATGATGTATATATTAAAG 959
||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 900 ATCGGTCTTTGAAGGATGATTTGGTTTTGGCTGAAATGGTGAATGATGTATATATTAAAG 959
Query 960 GTCGGTATAAAAGCCGGTACAGTATGATGAAGAAGCTCTTAAGAGATGGGCGTAAACCGG 1019
||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 960 GTCGGTATAAAAGTCGGTACAGCATGATGAAGAAGCTCCTAAGAGATGGGCGTAAACCGG 1019
Query 1020 AAGAAGTGAACGATGTGCTTGGTCTACGGGTCATATTGATGCCGAATTCTGTAACAAACG 1079
||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||
Sbjct 1020 AAGAAGTGAACGATGTGCTTGGTCTACGGGTCATATTAATGCCTAATTCTGTAGTAAACG 1079
Query 1080 ATGTTGAAGTGGGTGAAAAAGCCTGTTACAGAACAAGTGAGATTATCCGGTCTTTGTGGA 1139
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATGTTGAAGTTGGCGAAAAAGCCTGTTACAGAACAAGTGAGATTATCCGGTCTTTGTGGA 1139
Query 1140 AGGAGATTCCGCATAGAACAAAAGACTACATTGCTAGGCCGAAGGCAAATGGGTATAGGA 1199
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1140 AGGAGATTCCGCATAGAACAAAAGACTACATTGCTAGGCCAAAGGAAAATGGGTATAGGA 1199
Query 1200 GTTTACACATGGCAGTTGATGTTAGCGACAGCGATCAGACGAGACCTTTGATGGAGATAC 1259
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1200 GTTTACACATGGCAGTTGATGTTAGCGACAGCGATCAGATAAGACCTTTGATGGAGATAC 1259
Query 1260 AAATACGGACAATGGATATGGATGGATCCGCTAATGCTGGAACAGCATCACATTCTTTGT 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAATACGGACAATGGATATGGATGGATCCGCTAATGCTGGAACAGCATCACATTCTTTGT 1319
Query 1320 ATAAAGGCGGTCTAACCGACCCAAAAGAGGCGAAGCGGCTTAAAGCAATAATGATGGCAG 1379
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1320 ATAAAGGCGGTCTAACCGACCCAAAAGAGGCGAAGCGGCTTAAAGCGATAATGTTGGCAG 1379
Query 1380 CAGCAGATCTTGCAGCAATTCGTCTGAAAGATCTCTCATCAAATAAACACCAAAGCTTCA 1439
|||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1380 CAGCGGATCTTGCAGCGATTCGTCTCAAAGATATCTCATCAAATAAACACCAAAGCTTCA 1439
Query 1440 AGACAACAATGAACCAGAGAGACAGAGTGTTTTGCCTTCTGGACAAAAACGGGGACGGAA 1499
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AGACAACAACGAACCAGAGAGACAGAGTGTTTTGCCTTCTGGACAAAAACGGGGACGGAA 1499
Query 1500 TGATCAGCATAGAGGAACTAATGGAAGTGATGGAAGAGCTTGGAGCTCCAGGTGAAGACG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TGATCAGCATAGAGGAACTAATGGAAGTGATGGAAGAGCTTGGAGCTCCAGGTGAAGACG 1559
Query 1560 CAGAGGAAATGATGCAGCTTCTTGACTCTAACAGCGATGGATCTCTTAGTTCAGACGAAT 1619
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CAGAGGAGATGATGCAGCTTCTTGACTCTAACAGCGATGGATCTCTTAGTTCAGACGAAT 1619
Query 1620 TCGATACGTTCCAGAAACAAGTAGAGTTCATGCGTAAATGGGAAGATAGAGATAACGAGT 1679
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TCGATACGTTTCAGAAACAAGTAGAGTTCATGCGTAAATGGGAAGATAGAGATAACGAGT 1679
Query 1680 ACAAGAGTCTTTTAGACGAGAAGCTTCATGATCTCCCACATCAAGATACCACAGGTTTGA 1739
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1680 ACAAGAGTCTTTTAGACGAGAAGCTTCATGATCTTCCACATCAAGATACCACAGGTTTGA 1739
Query 1740 TACAGTTATACAATAAAGAGCTTGAAGATCGTCTCTCAACCCATTAAA-TATCAAACCAT 1798
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1740 TACAGTTATACAATAAAGAGCTTGAGGATCGTCTCTCAACCCATTAAAATATCAAACCAT 1799
Query 1799 TTTTCTAAAATCTAATAT 1816
||||||| | ||||||||
Sbjct 1800 TTTTCTACATTCTAATAT 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89858975550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5