BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479227
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17510.1 | Symbols: CIPK1, SnRK3.16 | CBL-interacting protei... 2523 0.0
AT1G48260.1 | Symbols: CIPK17, SnRK3.21 | CBL-interacting prote... 881 0.0
> AT3G17510.1 | Symbols: CIPK1, SnRK3.16 | CBL-interacting protein
kinase 1 | chr3:5988991-5992912 REVERSE LENGTH=1938
Length=1938
Score = 2523 bits (1366), Expect = 0.0
Identities = 1647/1770 (93%), Gaps = 70/1770 (4%)
Strand=Plus/Plus
Query 1 AGAGGAAGCAAAGAGAAGTAGCGTCCTCTCTTCAATTTCAACCGGCActttcttctcttc 60
||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 4 AGAGGAAACAAAGAGAAGTAGCGTCCTCTCTTCAATTTCAACCGGCA-------CT-TTC 55
Query 61 ttcttcttcttcttcttcttcccaatcttcttcgtctcttTACCTACACC------TATA 114
||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 56 TTC-TCTTCTTCTTCTTCTTCCCAATCTTCCTCGTCTCTTTACCTACACCTATATATATA 114
Query 115 TATATA-ATATCTCTCCTTCCCTCACACACAAACCTGCACAGCTGCAATAATCTACTT-C 172
|||||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 115 TATATATATATATCTCCTTCCCTCACACACATACCTGCACAGCTACAATAATCTACTTCC 174
Query 173 CC-CTTT---T-------TT-A-A-CAA-CGAATCGGAAGATTCAAGCGAGAAATCGATT 217
|| |||| | || | | || | |||||||||||||||||||||||||||||
Sbjct 175 CCTCTTTCAATAACGGAATTAATAGTAATCTAATCGGAAGATTCAAGCGAGAAATCGATT 234
Query 218 TGGTTGTCTGA-AATT-G--G-----T-----GA--T------T-GATTGGATGGTGAAA 254
|||||||||| |||| | | | || | | ||||||||||||| |
Sbjct 235 TGGTTGTCTGTTAATTTGTTGGGAAATAAATTGAAATAGGAGATTGATTGGATGGTGAGA 294
Query 255 AGGCAAGAGGAG-A-A-GAAGGTGGAGAAGGGAATGCGTCTGGGTAAATACGAGCTTGGT 311
|||||||||||| | | ||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 295 AGGCAAGAGGAGGAGAAGAAGGCGGAGAAGGGAATGCGTCTGGGGAAATACGAGCTAGGG 354
Query 312 AGGACGCTCGGCGAGGGTAATTTCGGTAAAGTTAAATTCGCTAGAGATACCGTCTCCGGT 371
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 355 AGGACGCTCGGCGAGGGTAATTTCGGTAAAGTTAAATTCGCTAAAGATACCGTCTCCGGT 414
Query 372 CAATCCGTCGCTGTTAAAATTATCGACAAGTCTCGTATCGCCGATCTCAACTTCTCCTTA 431
|| ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 415 CATTCCTTCGCCGTTAAAATCATCGACAAGTCTCGTATCGCCGATCTCAACTTCTCCTTA 474
Query 432 CAGGTTTGCATAAAAAGAGAGATCCGGACTCTGAAAATGTTGAAGCATCCCCACATTGTT 491
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 475 CAG------ATAAAAAGAGAGATCCGGACTCTGAAAATGTTGAAACATCCCCACATTGTT 528
Query 492 AGATTACATGAGGTATTGGCTAGCAAAACGAAAATTAATATGGTAATGGAACTTGTTACC 551
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AGATTACATGAGGTCTTGGCTAGCAAAACGAAAATTAATATGGTAATGGAACTTGTTACC 588
Query 552 GGAGGAGAATTGTTCGACAGAATTGTTTCCAACGGAAAATTAACAGAAACTGATGGAAGA 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GGAGGAGAATTGTTCGACAGAATTGTTTCCAACGGAAAATTAACAGAAACTGATGGAAGA 648
Query 612 AAAATGTTTCAGCAGCTGATTGATGGAATCAGCTACTGTCACAGCAAAGGTGTTTTCCAC 671
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 649 AAAATGTTTCAGCAGCTTATCGATGGAATCAGCTACTGTCATAGCAAAGGTGTTTTCCAC 708
Query 672 CGGGATCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGACATATAAAGATCACTGAT 731
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGGGATCTCAAGCTAGAGAATGTTCTTCTTGATGCAAAGGGACATATAAAGATCACTGAT 768
Query 732 TTTGGCCTCAGTGCCCTGCCTCAGCATTTTAGGGATGACGGATTGTTGCATACAACCTGT 791
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TTTGGCCTCAGTGCTCTGCCTCAGCATTTTAGGGATGACGGATTGTTGCATACAACCTGT 828
Query 792 GGAAGTCCTAATTACGTTGCGCCTGAGGTTTTAGCCAACAGAGGTTACGATGGTGCAGCG 851
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 829 GGAAGTCCTAATTACGTTGCGCCTGAGGTTTTAGCTAACAGAGGCTACGATGGTGCAGCA 888
Query 852 TCAGATATATGGTCGTGTGGTGTAATCTTGTATGTGATTCTAACCGGATGTCTTCCTTTT 911
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCAGACATATGGTCCTGTGGTGTAATCTTGTATGTGATTCTAACCGGATGTCTTCCTTTC 948
Query 912 GACGATAGAAACCTTGTAGTTCTTTACCAGAAGATATGCAAAGGAGACCCACCAATACCA 971
||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 949 GACGACAGAAACCTTGCAGTTCTTTACCAGAAGATATGTAAAGGAGACCCACCAATACCA 1008
Query 972 AGATGGTTATCACCAGGTGCAAGAACCATGATTAAGAGAATGCTCGATCCAAATCCAGTC 1031
||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1009 AGATGGTTATCCCCGGGTGCAAGAACCATGATTAAGAGAATGCTTGATCCAAATCCAGTC 1068
Query 1032 ACCAGGATCACAGTCGTGGGTATTAAAGCCAGCGAGTGGTTCAAACACGAGTATATTCCT 1091
|| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1069 ACGAGGATCACAGTTGTGGGTATTAAAGCCAGCGAGTGGTTCAAACTTGAGTACATTCCT 1128
Query 1092 TCAATTCCCGATGATGATGACGAAGAAGAAGTTGACACAGACGATGATGCTTTCTCAATC 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TCAATTCCCGATGATGATGACGAAGAAGAAGTTGACACAGACGATGATGCTTTCTCAATC 1188
Query 1152 CAAGAACTCGGATCAGAAGAAGGGAAGGGCAGTGATTCACCAACGATCATCAATGCGTTT 1211
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1189 CAAGAACTCGGATCAGAAGAAGGGAAGGGCAGTGATTCACCGACCATCATCAATGCGTTT 1248
Query 1212 CAGTTAATCGGAATGTCTTCCTTTCTTGACCTGTCCGGTTTCTTTGAACAAGAGAATGTA 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CAGTTAATCGGAATGTCTTCCTTTCTTGACCTGTCCGGTTTCTTTGAACAAGAGAATGTA 1308
Query 1272 TCAGAGAGGAGAATAAGATTCACTTCAAATAGCTCCGCAAAAGATTTACTCGAGAAAATC 1331
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1309 TCAGAGAGGAGAATAAGATTCACTTCAAATAGCTCAGCAAAAGATTTACTGGAGAAAATC 1368
Query 1332 GAAACAGCCGTTACAGAGATGGGATTCAGTGTACaaaagaaacatgcgaagttaaaagta 1391
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1369 GAAACAGCCGTTACAGAAATGGGATTCAGTGTACAAAAGAAACATGCCAAGTTAAGAGTA 1428
Query 1392 aaacaagaagaaagaaaccagaaagGTCAAGTTGGTTTATCAGTAACAGCTGAGGTTTTC 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 AAACAAGAAGAAAGAAACCAGAAAGGTCAAGTTGGTTTATCAGTAACAGCTGAGGTTTTC 1488
Query 1452 GAGATAAAACCGTCACTGAACGTGGTTGAGCTAAGAAAATCTTATGGCGATTCATGTTTA 1511
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 GAGATAAAGCCGTCACTGAACGTGGTTGAGCTAAGAAAATCTTATGGCGATTCATGTTTA 1548
Query 1512 TATAGACAGTTGTACGAGAGACTATTAAAAGACGTGGGCACATCCTCGCCGGAGCAAGAG 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 TATAGACAGTTGTACGAGAGACTATTAAAAGACGTGGGCACATCCTCGCCGGAGCAAGAG 1608
Query 1572 ATAGTATCCTAGTAGGTGTTGGTGTTTTCGGCTGAAAGAGATATACATAGCTCTAATAAT 1631
|||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1609 ATAGTAAC-T--TAGGTGTTGGTGTTTTCGGCTGAA-GAGATATACATAGCTCTAATAAT 1664
Query 1632 TTATCATATGGTACACACCATCCATGTTCATA-A-TTTATTATCTTAAGTATATATCAAA 1689
||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 1665 TTATCATATGGAACACACCATCCATGTTCATATAATTTATTATCTTAAGTATATATAAAA 1724
Query 1690 GGAGCTCGATTTATATGATTAGTGCAAATA 1719
||||||||||||||||||||||||||||||
Sbjct 1725 GGAGCTCGATTTATATGATTAGTGCAAATA 1754
> AT1G48260.1 | Symbols: CIPK17, SnRK3.21 | CBL-interacting protein
kinase 17 | chr1:17813976-17817283 REVERSE LENGTH=1606
Length=1606
Score = 881 bits (477), Expect = 0.0
Identities = 1039/1303 (80%), Gaps = 67/1303 (5%)
Strand=Plus/Plus
Query 279 AAGGGAATGCGTCTGGGTAAATACGAGCTTGGTAGGACGCTCGGCGAGGGTAATTTCGGT 338
|||||||||||| | ||||| ||||||||||| ||||| ||||| ||||| |||| ||
Sbjct 67 AAGGGAATGCGTGTTGGTAAGTACGAGCTTGGGAGGACACTCGGAGAGGGAAATTCCGCA 126
Query 339 AAAGTTAAATTCGCTAGAGATACCGTC-T-CCGGTC-AATCCGTCGCTGTTAAAATTATC 395
||||||||||| |||| ||||| | || | |||| | |||| |||| | ||||| |||
Sbjct 127 AAAGTTAAATTTGCTATAGATA-C-TCTTACCGG-CGAATCATTCGCCATCAAAATCATC 183
Query 396 GACAAGTC-TCGTATCGC-CGATCTCAACTTCTCCTTACAGGTTTGCATAAAAAGAGAGA 453
|| ||||| | ||||| | || ||| ||| |||| || || | || || |||||||
Sbjct 184 GAGAAGTCGT-GTATCACACG-TCTTAACGTCTCTTTTCA-----G-ATTAAGAGAGAGA 235
Query 454 TCCGGACTCTGAAAATGTTGAAGCATCCCCACATTGTTAGATTACATGAGGTATTGGCTA 513
| || || || ||| | ||||||||||| ||||||| ||||||||||||| |||||||
Sbjct 236 TTCGAACACTCAAAGTTTTGAAGCATCCAAACATTGTCCGATTACATGAGGTCTTGGCTA 295
Query 514 GCAAAACGAAAATTAATATGGTAATGGAACT-TGTTACCGGAGGAGAATTGTTCGACAGA 572
||||||| || ||| | ||||| ||||| | ||| || |||||||| || || ||||||
Sbjct 296 GCAAAACCAAGATTTACATGGTTCTGGAA-TGTGTCACTGGAGGAGACTTATTTGACAGA 354
Query 573 ATTGTTTCCAACGGAAA-ATTAACAGAAACTGATGGAAGAAAAATGTTTCAGCAGCTGAT 631
||||| || || ||||| || | ||||| | ||| ||||||||||||||||| ||||
Sbjct 355 ATTGTCTCGAAAGGAAAGCTT-TCGGAAACACAAGGACGAAAAATGTTTCAGCAGTTGAT 413
Query 632 TGATGGAATCAGCTACTGTCACAGCAAAGGTGTTTTCCACCGGGATCTCAAGCTAGAGAA 691
||||||| ||||||| ||||| | ||| || ||||| ||| |||||||||||||||||||
Sbjct 414 TGATGGAGTCAGCTATTGTCATAACAAGGGCGTTTTTCACAGGGATCTCAAGCTAGAGAA 473
Query 692 TGTTCTTCTTGATGCAAAGGGACATATAAAGATCACTGATTTTGGCCTCAGTGCCCTGCC 751
||||||||||||||||||||| || || |||||||||||||||||||| ||||| ||| |
Sbjct 474 TGTTCTTCTTGATGCAAAGGGTCACATTAAGATCACTGATTTTGGCCTTAGTGCTCTGTC 533
Query 752 TCAGCATTTTAGGGATGACGGATTGTTGCATACAACCTGTGGAAGTCCTAATTACGTTGC 811
||| |||| |||||| || || ||| | |||||||| ||||| |||||||| || || ||
Sbjct 534 TCAACATTATAGGGAAGATGGGTTGCTACATACAACTTGTGGTAGTCCTAACTATGTCGC 593
Query 812 GCCTGAGGTTTTAGCCAACAGAGGT-TACGATGGTGCAGCGTCAGATATATGGTCGTGTG 870
|||||||||| |||| || |||| || ||||||||||| |||||||||||||| ||||
Sbjct 594 GCCTGAGGTTCTAGCTAAT-GAGGGCTATGATGGTGCAGCATCAGATATATGGTCATGTG 652
Query 871 GTGTAATCTTGTATGTGATTCTAACCGGATGTCTTCCTTTTGACGATAG-AAACCTTGTA 929
| |||||||||||||| ||||| || |||||||| |||||||| ||| | |||||||| |
Sbjct 653 GAGTAATCTTGTATGTTATTCTTACGGGATGTCTCCCTTTTGATGAT-GCAAACCTTGCA 711
Query 930 GTTCTTTACCAGAAGATATGCAAAGGAGA-CCCACCAATACCAAGATGGTTATCACCAGG 988
||| ||| || |||||||| |||||| || ||| |||||||| |||||| |||||| ||
Sbjct 712 GTTATTTGCCGGAAGATATTCAAAGGGGATCCC-CCAATACCTAGATGGATATCACTGGG 770
Query 989 TGC-AAGAACCATGATTAAGAGAATGCTCGATCCAAATCCAGTCACCAGGATCACAGTCG 1047
|| || ||| ||||| ||||||||||| ||||| ||||||||||| ||| | ||| |||
Sbjct 771 AGCTAA-AACTATGATCAAGAGAATGCTTGATCCTAATCCAGTCACGAGGGTGACAATCG 829
Query 1048 TGGGTATTAAAG-C-CAGCGAGTGGTTCAAACACGAGTATATTCCTTCAAT-TCCCGATG 1104
||||| |||| | || || ||||| ||||| || || | |||||||| | | ||||
Sbjct 830 CAGGTAT-AAAGGCTCAT-GATTGGTTTAAACATGACTACACTCCTTCAAACTAC-GATG 886
Query 1105 ATGATGACGAAGAAGAAGTTGA-CACAGACGATGATGCTTTCTCAATCCAAGAACTCGGA 1163
| || || || | | | |||| | || | || |||| ||| | | | | ||| |||
Sbjct 887 ACGACGATGATGTATAC-TTGATC-CA-A-GAAGATGTTTT-T-A-TG-ATGAA---GGA 935
Query 1164 -TCA-GAAGAAGGGAAGGGCAGTGATTCACCAACGATCATCAATGCGTTTCAGTTAATCG 1221
| | ||||||| |||| || |||||| ||||| || ||||| || |||||||| || |
Sbjct 936 AT-ATGAAGAAGAGAAGAGCCCTGATTCTCCAACCATTATCAACGCTTTTCAGTTGATTG 994
Query 1222 GAATGTCTTCCTTTCTTGACCTGTCCGGTTTCTTTGA-ACAAGAGAA-TGTATCAGAGAG 1279
||||||| || ||||| ||||| || ||||||||||| ||| ||||| | ||||||||||
Sbjct 995 GAATGTCCTCGTTTCTCGACCTCTCAGGTTTCTTTGAGACA-GAGAAAT-TATCAGAGAG 1052
Query 1280 G-AGAATAAGATTCACTTCAAATAGCTCCGCAAAAGATTTACTCGAGAAAATCGAAACAG 1338
| ||| |||||||||| |||||||| | || |||||||| | ||||| |||||||| |
Sbjct 1053 GCAGA-TAAGATTCACGTCAAATAGTTTAGCTAAAGATTTGTTGGAGAACATCGAAAC-G 1110
Query 1339 CCGTT-ACAGAGATGGGATTCAGTGTACaaaagaaacatgcgaagttaaaagtaaaacaa 1397
|| || |||||||| || || |||| ||||||||||| |||||||||| || |||
Sbjct 1111 ATTTTCACGGAGATGGGCTTTTGTTTACAGAAGAAACATGCAAAGTTAAAAGCAAT-CAA 1169
Query 1398 -gaagaaagaaac-cagaaa-gGTCAA-GTTGGTTTATCAGTAACAGCTGAGGTTTTCGA 1453
|||||||| | | || ||| || ||| | |||||||| ||||| ||||||||||||||
Sbjct 1170 AGAAGAAAGCA-CTCAAAAAAGG-CAATGC-GGTTTATCGGTAACGGCTGAGGTTTTCGA 1226
Query 1454 GATAAAACCGTCACTGAACGTGGTTGAGCTAAGAAAATCTTATGGCGATTCATGTTTATA 1513
||||| ||||| ||||| |||||||| ||||||||||| |||||||||| | | ||||
Sbjct 1227 GATAAGTCCGTCCCTGAATGTGGTTGAACTAAGAAAATCACATGGCGATTCGTCTCTATA 1286
Query 1514 TAGACAGTTGTACGAGAGACTATTAAAAGA-CGTGGGCACATC 1555
|| ||||||||||||| || |||| || || | ||||| ||||
Sbjct 1287 TAAACAGTTGTACGAGCGATTATTGAATGAGC-TGGGCTCATC 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88804764105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5