BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479229
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17530.1 | Symbols: | F-box and associated interaction doma... 446 3e-124
AT3G17540.1 | Symbols: | F-box and associated interaction doma... 220 2e-56
AT3G17265.1 | Symbols: | F-box and associated interaction doma... 159 5e-38
> AT3G17530.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6000860-6002282 FORWARD LENGTH=1423
Length=1423
Score = 446 bits (241), Expect = 3e-124
Identities = 293/318 (92%), Gaps = 4/318 (1%)
Strand=Plus/Plus
Query 1 ATGATGATTTCCGATCTTCCACACGATTTGGAATCGGAAATACTTTATAGGGTTCCGGCG 60
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1 ATGATGATTTCCGATCTTCCACACGATTTGGAATCGGAAATACTCTCTAGGGTTCCGGCG 60
Query 61 AAGTCTCTAGCAAAATGGAAGACTACTTGCAAACGATGGTACGCTTTATTCAGAGATCCG 120
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AAGTCCCTAGCAAAATGGAAGACTACTTGCAAACGATGGTATGCTTTATTCAGAGATCCG 120
Query 121 AGATTCGTCAAGAAGAACTTTGGTAAAGCAGCAACAAGGGAAATGATCGTACTGATGAAT 180
|| ||||||||||||||||||| |||||||| | |||||||||||| ||||||||||||
Sbjct 121 AGTTTCGTCAAGAAGAACTTTGATAAAGCAGGAGGAAGGGAAATGATAGTACTGATGAAT 180
Query 181 T-TGAGGCTTTATTCAAACAGCGTCAATCTCCAAGGGATTAACCACAGAGTTGATCCA-G 238
| | ||| ||||||||||||||||||||||||||||||||||| | ||| |||||||| |
Sbjct 181 TCT-AGGGTTTATTCAAACAGCGTCAATCTCCAAGGGATTAACAATAGATTTGATCCAAG 239
Query 239 CTATGGAGGTTACAGGTAAACTCATCAAGCTAAATGATTCAGAAGCTGTTGACATTTCTA 298
|||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||
Sbjct 240 -TATGGAGGTTACAGGTAAACTCATCAAGCTAAATGATTCAAAAGGTGTCGATATTTCTG 298
Query 299 ATATCTTTTACTGCGACG 316
||||||| |||||||||
Sbjct 299 CTATCTTTCACTGCGACG 316
Score = 409 bits (221), Expect = 4e-113
Identities = 340/392 (87%), Gaps = 29/392 (7%)
Strand=Plus/Plus
Query 827 GCTTCTTGTTGGAAGAGGAGAATGAAGTGGCAGTGTGTTCTGACGTAGACATGAAAGATG 886
||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 935 GCTTCTTGTTGGACGAGGAGAATAAAGTGGCAGTGTGTTCTGACGTAGACACGAAAGATG 994
Query 887 GACGTAGGAGCAGAATCTACATTGTTGGAAAGGatatatatatatataAAGAAGTTTATA 946
||| ||||||||||||||||||||| ||||||| || | | ||||||||||||| ||
Sbjct 995 GACTTAGGAGCAGAATCTACATTGTGGGAAAGG----AT-T-TCTATAAAGAAGTTTTTA 1048
Query 947 AAGAAAGTACAAAGGGATCAGATATCAATTGGCCACTTCTCCTCAGTTATGTTCCAAGCT 1006
||| | ||||| ||||||||||| ||||||||||||||||||| |||||||||| || |
Sbjct 1049 AAG--A-TACAAGGGGATCAGATAACAATTGGCCACTTCTCCTCTGTTATGTTCCTAGTT 1105
Query 1007 TGGTTAACATTCAGAAAAATATATCCAAAAAGGCAGAAGAAAATGAAATCAAAAGGATGT 1066
|||||| ||||||| |||||||| |||| ||||||||||||||||||||| | |
Sbjct 1106 TGGTTAGCATTCAGGAAAATATACCCAACAAGGCAGAAGAAAATGAAATC---A--A--- 1157
Query 1067 TAGTGGAATGAAGATTAGTCAATGATTTTCTTTTTAGTTTAGAAACACAG-AGTAACTGG 1125
| || | | | ||||||||| ||||||| |||||||||||||||| | || ||||||
Sbjct 1158 -A--GG-A-G--G-TTAGTCAATTATTTTCTATTTAGTTTAGAAACAC-GAAGGAACTGG 1208
Query 1126 ATGAAGTTTTT--CTTGTCCTTCTTTTGCTTTTGAAATTGGATGGTTGGTTTATTGATCT 1183
||||||||||| | |||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1209 ATGAAGTTTTTCACATGTCCTTCTTTTACTTTTGAAATTGGACGGTTGGTTTATTGATCT 1268
Query 1184 TTACACAAATACATTAATGTTCTGCTTATATG 1215
||||||||||||| ||||||||||||||||||
Sbjct 1269 TTACACAAATACAGTAATGTTCTGCTTATATG 1300
Score = 281 bits (152), Expect = 9e-75
Identities = 227/261 (87%), Gaps = 14/261 (5%)
Strand=Plus/Plus
Query 316 GACTTGTGGTTTGGAATCCC-TGTACCTGTGAAACTAGATGTATCTAACCCCAGAAAATG 374
|||||||||||||||| ||| |||||| |||||| |||||||||| || ||||||| ||
Sbjct 350 GACTTGTGGTTTGGAA-CCCGTGTACCGGTGAAATTAGATGTATC-AAACCCAGAATATT 407
Query 375 TTACCAGAATAATGATAGGTATGCTCTTGGATACGGAAGCAGC--A-CATCTTGCCATAG 431
||||| | ||||||||||||||||||||| ||||||| |||| | | |||||||||||
Sbjct 408 TTACCGGTGTAATGATAGGTATGCTCTTGGTTACGGAAACAGCAAATCTTCTTGCCATAG 467
Query 432 CTACAAAATCTTGAGGTCGTGCAT-TTATTACAACGACCA-AA----A-CCTCATGGATG 484
|||||||||||||||||| ||| | ||||||| |||||| || | |||||||| ||
Sbjct 468 CTACAAAATCTTGAGGTCTTGC-TGTTATTACGTCGACCAGAACCTCAGCCTCATGGCTG 526
Query 485 CTGAGTTTGAGATCTATGACTTTAGCACTAATTCTTGGAGAGATCTTGGTTACATCACTC 544
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 527 CTGAGTTTGAGATCTATGACTTTAGCACTGATTCTTGGAGAGATCTTGGTGACATCACTC 586
Query 545 GTGACTTGGTCGTATTTTCCA 565
||||| || |||||| |||||
Sbjct 587 GTGACATGATCGTATATTCCA 607
Score = 254 bits (137), Expect = 2e-66
Identities = 225/266 (85%), Gaps = 12/266 (5%)
Strand=Plus/Plus
Query 566 TTTCTGGAAATAAAGATAATGGCTTTTTCTTGCAGTATTTTGATTTCAAGACAGAGA-G- 623
|||||||| |||||| || || |||||| ||| |||||||||||| || || ||| |
Sbjct 641 TTTCTGGATCTAAAGAAAAAGGTTTTTTCATGCGGTATTTTGATTT-TAG-CAAAGAGGT 698
Query 624 ATTTGGGCGTCTCCCTCTTCCATACCAGAGTTTTAATGCTGAA-GATACCGCCGCTCTAT 682
|||||||||||||||||||||||| ||||||||||||||| || ||||||| |||||||
Sbjct 699 ATTTGGGCGTCTCCCTCTTCCATATCAGAGTTTTAATGCT-AACCATACCGCGGCTCTAT 757
Query 683 CAGTC-GTTGGGGACGAAAAGCTTGTGGTGTTACACCAGAGTATTCTTGCATTTTCAGAT 741
||| | |||||| ||||||| | | ||||| || || | ||||||||| | ||||||
Sbjct 758 CAG-CTGTTGGGAACGAAAAAATCGCCGTGTTGCAACAAAAAATTCTTGCAATGTCAGAT 816
Query 742 GAGATGAGGATTTGGGTCACAAATAAGATTGATGAGGCCAAAGACTTGTCGTGGAGGGAG 801
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 817 GAGATGAGGATTTGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGTCGTGGAGC-A- 874
Query 802 CGACTTCCTCTGAACAGTGGATTATG 827
|||| |||| ||||||||||||||
Sbjct 875 --ACTTTCTCTTAACAGTGGATTATG 898
> AT3G17540.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6002783-6003973 FORWARD LENGTH=1191
Length=1191
Score = 220 bits (119), Expect = 2e-56
Identities = 256/321 (80%), Gaps = 13/321 (4%)
Strand=Plus/Plus
Query 1 ATGATGATTTCCGATCTTCCACACGATTTGGAATCGGAAATACTTTATAGGGTTCCGGCG 60
||| ||||||| |||||||||||||| | |||||||||||||| | |||||||||| |
Sbjct 13 ATGGTGATTTCGGATCTTCCACACGAAATAGAATCGGAAATACTCTCTAGGGTTCCGACC 72
Query 61 AAGTCTCTAGCAAAATGGAAGACTACTTGCAAACGATGGTACGCTTTATTCAGAGATCCG 120
|||||||||||||| | | | ||||| |||||||||||||||||||||||||||||||||
Sbjct 73 AAGTCTCTAGCAAAGTTGCATACTACATGCAAACGATGGTACGCTTTATTCAGAGATCCG 132
Query 121 AGATTCGTCAAGAAGAACTTTGGTAAAGCAGCAACAAGGGAAATGAT-CGTACTGATGAA 179
|||||||| |||||||||||||||||| ||| || ||| ||| | | || | | ||
Sbjct 133 AGATTCGTGAAGAAGAACTTTGGTAAATCAGAAAGGAGGTTGATGTTACATA--G-T-AA 188
Query 180 TTTGAGGC-TTTATTCAAAC-AGCGTCAATCTCCAAGGGATTAACCACAGAGTTGATCCA 237
||| ||| ||||| ||| | || | ||||||| || ||| | |||| | |||||||
Sbjct 189 TTTC-GGCGTTTATA-AAATTACCGACGATCTCCATGGAATTCTCAACAGCGGTGATCCA 246
Query 238 GCTATGGAGGTTACAGGTAAACTCATCAAGCTAAATGAT-TCAGAAGCTGTTGACATTT- 295
|| | ||| ||||| ||||||| | ||| ||||| ||| ||||||| | |||||| |
Sbjct 247 TCTCTCGAGTTTACAAGTAAACTTAGCAACCTAAA-GATATCAGAAGAT-TTGACAATAA 304
Query 296 CTAATATCTTTTACTGCGACG 316
| || |||||| |||| ||||
Sbjct 305 CCAAAATCTTTCACTGTGACG 325
> AT3G17265.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5899515-5900637 REVERSE LENGTH=1038
Length=1038
Score = 159 bits (86), Expect = 5e-38
Identities = 137/160 (86%), Gaps = 10/160 (6%)
Strand=Plus/Plus
Query 1 ATGATGATTT-CCGATCTTCCACAC-GATTTGGAATCGGAAATACTTTATAGGGTTCCGG 58
|||||| ||| | ||||||||| | ||||| |||||||||||||| | ||||||||| |
Sbjct 1 ATGATG-TTTGCTTATCTTCCAC-CTGATTTAGAATCGGAAATACTCTCTAGGGTTCCTG 58
Query 59 CGA-AGTCTCTAGCAA-AA-TGGAAGACTACTTGCAAACGATGGTACGCTTTATTCAGAG 115
| | | | |||| || || || || ||||||||||||||||||||||||||||| ||||
Sbjct 59 CCACA-TTTCTA-AAAGAATTGCAA-ACTACTTGCAAACGATGGTACGCTTTATTTAGAG 115
Query 116 ATCCGAGATTCGTCAAGAAGAACTTTGGTAAAGCAGCAAC 155
|||||| |||||||||||||||||| ||||||||||||||
Sbjct 116 ATCCGATATTCGTCAAGAAGAACTTGGGTAAAGCAGCAAC 155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5