BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479230
Length=1112
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17540.1 | Symbols: | F-box and associated interaction doma... 1299 0.0
AT3G17530.1 | Symbols: | F-box and associated interaction doma... 658 0.0
AT2G24510.1 | Symbols: | F-box associated ubiquitination effec... 551 6e-156
AT2G13130.1 | Symbols: | pseudogene, F-box protein family, con... 366 2e-100
AT3G17270.1 | Symbols: | F-box family protein | chr3:5902479-5... 167 2e-40
AT3G17490.1 | Symbols: | F-box and associated interaction doma... 154 2e-36
AT3G17265.1 | Symbols: | F-box and associated interaction doma... 148 8e-35
AT3G17500.1 | Symbols: | F-box family protein | chr3:5986685-5... 113 3e-24
AT3G22730.1 | Symbols: | F-box and associated interaction doma... 78.7 1e-13
AT4G17200.1 | Symbols: | F-box and associated interaction doma... 69.4 7e-11
AT1G54550.1 | Symbols: | F-box and associated interaction doma... 60.2 4e-08
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 58.4 1e-07
> AT3G17540.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6002783-6003973 FORWARD LENGTH=1191
Length=1191
Score = 1299 bits (703), Expect = 0.0
Identities = 844/912 (93%), Gaps = 10/912 (1%)
Strand=Plus/Plus
Query 207 GATATCAGAAGATTTGAAAATAACCAAAATCTTTCACTGTGACGGTTTAATATTATGCTC 266
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GATATCAGAAGATTTGACAATAACCAAAATCTTTCACTGTGACGGTTTAATATTATGCTC 341
Query 267 CACTAAGGAAAACACTAGACTCGTTGTTTGGAACCCACGTACCGGTCAAACCAGGTGGAT 326
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 342 CACTAAGGAAAACACTAGACTCGTTGTTTGGAACCCATGTACCGGTCAAACCAGGTGGAT 401
Query 327 CAAACGCAGTGATTGTTACCGGAGTGAGGATTTGTATTGTCTTGGATACGTAAACAGCAA 386
||||| ||| | ||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 402 CAAACCCAGCAAACGTTACCGTAGTGATGATTCGTATTGTCTTGGATACGTAAACAGCAA 461
Query 387 GTCTTCTTACCATAGCCACAAAATCTTGAGGTATTGCTTTTATTACAACGACCAGAATGT 446
|||||||||||| | | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 462 GTCTTCTTACCACAACTACAAAATCTTGAGGTATTGCTTTTATTACAACGACCAGGATGC 521
Query 447 TTGTGTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGA 506
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 522 TTGTGTTAGTGAATTTGAGATCTATGACTTTAGCTCTGAATCATGGAGGGTTCTTGATGA 581
Query 507 CT---GCACTCAT-AACTGGGGCTTATTCTGCAATGGCATGTCTTTGAAAGGAAATACTT 562
|| |||||| | || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 582 CTACTGCACTCGTGAA-TGGGGCTTATTCTGCCATGGCATGTCTTTGAAAGGAAATACTT 640
Query 563 ACTTTGTTGCTGGAGAACAAGAAACAGGATTTTTCATGCTGTATTTTGATTTCAAGACAG 622
||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 641 ACTTTGTTGCTGGAGAAAAAGAAACAGGCTTTTTCATGCTGTACTTTGATTTCAAGACAG 700
Query 623 AGAGATTTGAGCGTCTCCCTCTTCCGTATCAAAGTTTTGATTCTGAAGAAACTGCGGTTC 682
||||||||||||||||||||||||||||||| ||||||||||||||||| || || |||
Sbjct 701 AGAGATTTGAGCGTCTCCCTCTTCCGTATCAGAGTTTTGATTCTGAAGATACCGCTGTTT 760
Query 683 TATCAGTTGTTAGGGAAGAAAAACTTGCGGTGTTACAGCAGAATATTCAAGCGTTGTCAA 742
||||| ||||| ||| ||||||||||||||||||||| || ||||||||| |||| ||||
Sbjct 761 TATCAATTGTTGGGGGAGAAAAACTTGCGGTGTTACATCAAAATATTCAATCGTTTTCAA 820
Query 743 ATGAGATGAGGATATGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGACGTGGAGCA 802
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 821 ATGAGATGAGGATATGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGACATGGAGCA 880
Query 803 ACTTCGTCTTAACAGTGGATTATGATAGATTTAGTTTACCAAGTGTGAATAATGTGTCAA 862
||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 881 ACTTCTTCTTAGCAGTGGATTATGATATATTTAACTTACCAAGTGTGAATAATGTGACAA 940
Query 863 GCTTCTTGTTGGACGAGGAGAATAAAGTGGCATTGTGTTGTGATAGAGACATGGATGATG 922
|||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||
Sbjct 941 GCTTCTTGTTGGACGAGGAGAATAAAGTGGCAGTGTGTTGTGATAGACACATAGATGATG 1000
Query 923 AAGATAAGACCAGAGTCTACATTGTTGGAGA-GACTACAT-ATAAAGAAGTTTATAAAGA 980
|||||||||||||| ||||||||||||||| || | | | |||||||||||||||||||
Sbjct 1001 AAGATAAGACCAGAATCTACATTGTTGGAGTTGA-T-CTTTATAAAGAAGTTTATAAAGA 1058
Query 981 GACTATAAAGGGATCCCATTTCAATTGGCCACTTCTCCTCAGTTATCTTCCAAGCTTGGT 1040
|| | ||||||| | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1059 GAGGACAAAGGGAGCTCATTTCAATTGGCCACTTCTCATCAGTTATCTTCCAAGCTTGGT 1118
Query 1041 TCACATTCACGAAAATACACCCAAAAGACAAAAGAAAGGGAAACAAGAAGAGGTTAGTTA 1100
||| ||||| ||||| | ||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1119 TCATATTCAGGAAAA-ATACCCAAAAGACAAAAGAAAAGGAAACAAGAGGAGGTTAGTTA 1177
Query 1101 AACGAATTACTT 1112
||||||||||||
Sbjct 1178 AACGAATTACTT 1189
Score = 257 bits (139), Expect = 1e-67
Identities = 152/158 (96%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAAGAAGATGATGATTTCTGATCTTCCACACGAACTAGAATCGGAAATACTCTCT 60
|||||||||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGAGAAAGACGATGGTGATTTCGGATCTTCCACACGAAATAGAATCGGAAATACTCTCT 60
Query 61 AGGGTTCCGACCAAGTCTCTAGCAAAGTTGCAAACTACATGCAAACGATGGTACGCTTTA 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 AGGGTTCCGACCAAGTCTCTAGCAAAGTTGCATACTACATGCAAACGATGGTACGCTTTA 120
Query 121 TTCAGAGATCCGAGATTCGTGAAGAAGAACTTTG-TAA 157
|||||||||||||||||||||||||||||||||| |||
Sbjct 121 TTCAGAGATCCGAGATTCGTGAAGAAGAACTTTGGTAA 158
> AT3G17530.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6000860-6002282 FORWARD LENGTH=1423
Length=1423
Score = 658 bits (356), Expect = 0.0
Identities = 719/889 (81%), Gaps = 46/889 (5%)
Strand=Plus/Plus
Query 235 ATCTTTCACTGTGACGGTTTAATATTATGCTCCACTAAGGAAAACACTAGACTCGTTGTT 294
||||||||||| |||||||| ||||||||| | || | ||||| |||| |||| || |||
Sbjct 301 ATCTTTCACTGCGACGGTTTGATATTATGCACTACGACGGAAAGCACTGGACTTGTGGTT 360
Query 295 TGGAACCCACGTACCGGTCAAACCAGGTGGATCAAACGCAGTGAT-TGTTACCGGAGTGA 353
|||||||| |||||||| ||| || || ||||||| ||| || | ||||||| || |
Sbjct 361 TGGAACCCGTGTACCGGTGAAATTAGATGTATCAAACCCAG-AATATTTTACCGGTGTAA 419
Query 354 GGATTTGTATTG-TCTTGGATACGTAAACAGCAAGTCTTCTTACCATAGCCACAAAATCT 412
||| ||| || |||||| |||| ||||||||| ||||||| ||||||| |||||||||
Sbjct 420 TGATAGGTA-TGCTCTTGGTTACGGAAACAGCAAATCTTCTTGCCATAGCTACAAAATCT 478
Query 413 TGAGGTATTGCTTTTATTACAACGACCAGAA--T--G--T-TTGTGTTGGTGAATTTGAG 465
|||||| ||||| ||||||| ||||||||| | | | || | || ||| ||||||
Sbjct 479 TGAGGTCTTGCTGTTATTACGTCGACCAGAACCTCAGCCTCATG-GCTGCTGAGTTTGAG 537
Query 466 ATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGAC-TGCACTCATAAC-TGGG 523
||||||||||||||| ||||||| ||||| | ||||| |||| | ||||| | || | |
Sbjct 538 ATCTATGACTTTAGCACTGATTCTTGGAGAGATCTTGGTGACAT-CACTCGTGACAT-GA 595
Query 524 GC-T-TATTCTGCAATGGCATGTCTTTGAAAGGAAATACTTACTTTGTTGCTGGA-GAAC 580
| | ||||| || |||| |||||||||||||||||||||||| ||| ||||| |
Sbjct 596 TCGTATATTC--CAGTGGCGTGTCTTTGAAAGGAAATACTTACTGGGTTTCTGGATCTA- 652
Query 581 AAGAAACAGGATTTTTCATGCTGTATTTTGATTTCAAGACAGAGA-G-ATTTGAGCGTCT 638
|||||| ||| |||||||||| |||||||||||| || || ||| | ||||| ||||||
Sbjct 653 AAGAAAAAGGTTTTTTCATGCGGTATTTTGATTT-TAG-CAAAGAGGTATTTGGGCGTCT 710
Query 639 CCCTCTTCCGTATCAAAGTTTTGATTCTGAA-GAAACTGCGGTTCTATCAGTTGTTAGGG 697
||||||||| ||||| |||||| || || || | || |||| |||||||| |||| |||
Sbjct 711 CCCTCTTCCATATCAGAGTTTTAATGCT-AACCATACCGCGGCTCTATCAGCTGTT-GGG 768
Query 698 AA-GAAAAACTTGCGGTGTTACAGCAGAATATTCAAGCGTTGTCAAATGAGATGAGGATA 756
|| |||||| | || ||||| || || || |||| || ||||| |||||||||||||
Sbjct 769 AACGAAAAAATCGCCGTGTTGCAACAAAAAATTCTTGCAATGTCAGATGAGATGAGGATT 828
Query 757 TGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGACGTGGAGCAACTT-CGTCTTAAC 815
|||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||
Sbjct 829 TGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGTCGTGGAGCAACTTTC-TCTTAAC 887
Query 816 AGTGGATTATGATAGATTTAGTTTACCAAGTGTGAAT-AATGTGTCAAGCTTCTTGTTGG 874
||||||||||| || ||||| ||||||| || | | | |||||| |||||||||||||||
Sbjct 888 AGTGGATTATGGTAAATTTAATTTACCATGTCT-AGTGAATGTGACAAGCTTCTTGTTGG 946
Query 875 ACGAGGAGAATAAAGTGGCATTGTGTTGTGATAG-AGACATGGATGATGAAGATAAGACC 933
|||||||||||||||||||| |||||| ||| | ||||| | | |||| | || || |
Sbjct 947 ACGAGGAGAATAAAGTGGCAGTGTGTTCTGAC-GTAGACACGAAAGATGGACTTAGGAGC 1005
Query 934 AGAGTCTACATTGTTGGAGAG-ACTACATATAAAGAAGTTTATAAAGAGACTATAAAGGG 992
||| |||||||||| ||| || | | | ||||||||||||| |||||| || | | |||
Sbjct 1006 AGAATCTACATTGTGGGAAAGGATTTC-TATAAAGAAGTTTTTAAAGATAC-A-AG-GGG 1061
Query 993 ATCCCATTTCAATTGGCCACTTCTCCTCAGTTATCTTCCAAGCTTGGTTCA-CATTCACG 1051
||| || ||||||||||||||||||| ||||| |||| || |||||| | |||||| |
Sbjct 1062 ATCAGATAACAATTGGCCACTTCTCCTCTGTTATGTTCCTAGTTTGGTT-AGCATTCAGG 1120
Query 1052 AAAATACACCCAA-AAGACAAAAGAAAGGGAAA-CAAGAAGAGGTTAGT 1098
|||||| |||||| ||| || |||||| |||| ||| | |||||||||
Sbjct 1121 AAAATATACCCAACAAGGCAGAAGAAAATGAAATCAA-AGGAGGTTAGT 1168
> AT2G24510.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:10404373-10405650 FORWARD LENGTH=907
Length=907
Score = 551 bits (298), Expect = 6e-156
Identities = 560/683 (82%), Gaps = 32/683 (5%)
Strand=Plus/Plus
Query 276 AAACACTAGACTCGTTGTTTGGAAC-CCACGTACCGGTCAAACCAGGTGGATCAAA-CGC 333
|||||||||||| || |||||| || ||| |||||||| ||||| ||||||||||| ||
Sbjct 87 AAACACTAGACTTGTGGTTTGGGACTCCA-GTACCGGTGAAACCCGGTGGATCAAACCG- 144
Query 334 AGTGA-TTGTTACCGGAGTGAGGATTTGTATTGTCTT-GGATACGTAAACAGCAAGTCTT 391
|| | | ||| |||| ||| |||| ||| || || ||||||||||||||||||||||
Sbjct 145 AG-AACTCGTTTTCGGAATGATGATTACTATGGT-TTAGGATACGTAAACAGCAAGTCTT 202
Query 392 CTTACCATAGCCACAAAATCTTGAGGTATTGCTTTTATTA-CAACGACCAGAATGTTTGT 450
|| ||||||| |||||||||||||| ||||| ||| || ||||||||||| ||
Sbjct 203 CTGGCCATAGCTTCAAAATCTTGAGGTCTTGCTATTA-TAGAAACGACCAGAAACAATGG 261
Query 451 GTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGACTGC 510
|||| ||| |||||||||||||| ||| |||||||| | ||||||||||||||| ||| |
Sbjct 262 GTTGCTGAGTTTGAGATCTATGAGTTTGGCTCTGATACTTGGAGGGTTCTTGATTACTTC 321
Query 511 ACTCATAACTGGGGCT-TATTCTGCAA-TGGCATGTCTTTGAAAGGAAATACTTACTTTG 568
|||||| ||| || | |||| | ||| |||| | | |||||| |||| ||||||| |
Sbjct 322 ACTCATGACTATGG-TGTATT-TTCAAGTGGCGGGCCCTTGAAAAGAAACACTTACTGGG 379
Query 569 TTGCTGGAGA-ACAAGAAACAGG-ATTTTTCATGCTGTATTTTGATTTCA-AGACAGAGA 625
|||||||||| | |||||| || | | |||||| ||||||||||||||| | | ||||
Sbjct 380 TTGCTGGAGATA-AAGAAATGGGCA-TGTTCATGTTGTATTTTGATTTCACA-AGGGAGA 436
Query 626 GATTTGAGCGTCTCCCTCTTCCGTATCAA-AGTTTTGATTC-TGAAGAAACTGCGGT-TC 682
|||||| || | | |||||||||| | || |||||| | || |||||| ||||| | ||
Sbjct 437 GATTTGGGCATTTTCCTCTTCCGT-TTAAGAGTTTT-AATCGTGAAGATACTGC-TTCTC 493
Query 683 TATCAGTTGTTAGGGAAGAAAAACT-TGCGGTGTTACAGCAGAATATTCAAGCGTTGTCA 741
||||||||||||||||||||||||| | | |||||||| || || |||| | || |||
Sbjct 494 TATCAGTTGTTAGGGAAGAAAAACTCT-CAGTGTTACATCAAAAGATTCTTGAATTTTCA 552
Query 742 AATGAGATGAGGATATGGGTCACCAATAAGATTGATGAGGCCAAAGACTTGACGTGGAGC 801
|||||||||| ||||||| | ||||||||||||||||| ||| ||| ||| ||||||||
Sbjct 553 AATGAGATGAAGATATGGTTGACCAATAAGATTGATGAAACCATAGAATTGTCGTGGAGC 612
Query 802 AACTTCGTCTTAACAGTGGATTATGATA-GATTTAGTTTACCAAGTGTGAAT-AATGTGT 859
|||||||||||||||||||||||||||| | |||| |||||| || ||| | ||||||
Sbjct 613 AACTTCGTCTTAACAGTGGATTATGATAAG-TTTAATTTACCGAGCGTGG-TGAATGTGG 670
Query 860 CAAGCTTCTTGTTGGACGAGGAGAATAAAGTGGCATTGTGTTGTGATAGAGACATGGATG 919
|||| ||||||||||| |||||||||||||||||| |||||| ||||| ||| ||||||
Sbjct 671 CAAGTTTCTTGTTGGATGAGGAGAATAAAGTGGCAGTGTGTTCTGATATTGACGTGGATG 730
Query 920 ATGAAGATAAGACCAGAGTCTAC 942
||||| ||| |||||||||||||
Sbjct 731 ATGAAAATAGGACCAGAGTCTAC 753
> AT2G13130.1 | Symbols: | pseudogene, F-box protein family, contains
Pfam PF00646: F-box domain; similar to F-box protein
family, AtFBX9 (GI:20197985) (Arabidopsis thaliana) | chr2:5419675-5420834
REVERSE LENGTH=1160
Length=1160
Score = 366 bits (198), Expect = 2e-100
Identities = 533/686 (78%), Gaps = 57/686 (8%)
Strand=Plus/Plus
Query 442 AATGTTTGTGTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGG-AGGGTTCT 500
||| || |||| | ||| ||||| |||| ||| ||| | ||||||| ||| |||||| |
Sbjct 456 AATCTTCGTGTAGCTGAGTTTGAAATCTTTGATTTTGGATCTGATT-GTGGAAGGGTTAT 514
Query 501 TGATGACTGCACTCATAAC-TGGGGCTTA-T-TCTGCAATGGCATGTCTTTGAAAGGAAA 557
|||||| || || || || ||||| || | ||||| ||| ||||||| || || ||
Sbjct 515 TGATGA-TG--CT-ATCACTTGGGGAATATTCTCTGC--TGGTGTGTCTTTCAATGGTAA 568
Query 558 TACTTACTTTG-TTGCTGGAGA-ACAAGAAACAGGATTTTTCATGCTGTATTTTGATTTC 615
||||||| | | ||| |||||| | ||||||| || |||||| || || |||||||||||
Sbjct 569 TACTTAC-TGGATTGGTGGAGAGA-AAGAAACTGGTTTTTTCTTGATGGATTTTGATTTC 626
Query 616 A-AGACAGAGAGATTTGAGCGTCTCCCTCTTCCGTATCAAAGTTTTGATTCTGAAGA-AA 673
| | |||||||| |||| |||| | |||||||||||||| |||| ||||| |||||| |
Sbjct 627 ACA-ACAGAGAGGTTTGGGCGTTTTCCTCTTCCGTATCAGAGTTATGATTATGAAGATAT 685
Query 674 CTGCGGTTCTATCAGTTGTTAGGGAAGAAAAACT-TGCGGTG-TTACAGCAGAATATTCA 731
| ||||||||||| || |||| |||||||||||| | | || | | | |||||||||||
Sbjct 686 C-GCGGTTCTATCGGTAGTTAAGGAAGAAAAACTCT-CCTTGATGA-ATCAGAATATTCA 742
Query 732 -A-GCGTT-GTCAAATGAGATGAGGATATGGGTCACCAATAAGATTGATGAGGCCAAAGA 788
| || || | ||||||| ||||||||| || |||||| ||||||| |||||| |
Sbjct 743 TATAAATTCTTC--A-GAGATGAAGATATGGGTGACTAATAAGTTTGATGAAGCCAAATA 799
Query 789 CTTGACGTGGAGCAACTTCGTCTTAACAGTGGATTATGATAGATTTA-GTTTACCAAGTG 847
|||| | |||||| | | ||||| |||||||| ||||| ||||| | ||||||| |
Sbjct 800 CTTGTCATGGAGCCA-GT--TCTTAGTAGTGGATTTTGATAAATTTACG-TTACCAAATT 855
Query 848 TGAATAATGTG-TCAAGC-TTCTTGTTGGACGAGGAGAATAAAGTGGCATTGTGTTGTGA 905
|||| | ||| | || | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 856 TGAACAGCGTGAT-AA-CTTTCTTGTTGGACGAGGAGAATAAAGTGGCACTGTGTTGTGA 913
Query 906 TAGAGACATGGATGATGAAGATAAGACCAGAGTCTACATTGTTGGAGAG-ACTACATA-T 963
|| ||||||||| |||||||| | ||||| | |||| |||||||||| | | | | | |
Sbjct 914 TACAGACATGGAAGATGAAGAGAGGACCAAAATCTATATTGTTGGAGTGGA-T-CTTTGT 971
Query 964 AAAGAAGT-TTATAAAGAGACTATAAAGGGATCCCAT-TTCAATTGGCCAC-TTCTCCTC 1020
||| |||| || ||||||| || ||||||||| | || ||||||||| || || ||
Sbjct 972 AAACAAGTCTT-TAAAGAGGTTACAAAGGGATCAGTTCTT-AATTGGCCATGTT-TCGTC 1028
Query 1021 AGTTAT-CTTCCAAGCTTGGTTCACATTCACGAAA-ATACACCCAAAAGACAAAA-GAAA 1077
|||||| || |||| |||||||||||||| |||| | || |||||| | |||| ||||
Sbjct 1029 AGTTATGCT-CCAAATTTGGTTCACATTCA-GAAAGACACTCCCAAA-GTTAAAAAGAAA 1085
Query 1078 GGGAAA-CAAGAAGAGGTTAGT-TAA 1101
|| | ||| | ||||| ||| |||
Sbjct 1086 TTGAGAGCAA-AGGAGGTAAGTCTAA 1110
> AT3G17270.1 | Symbols: | F-box family protein | chr3:5902479-5902883
REVERSE LENGTH=405
Length=405
Score = 167 bits (90), Expect = 2e-40
Identities = 121/135 (90%), Gaps = 5/135 (4%)
Strand=Plus/Plus
Query 26 ATCTTCCACACGAACTAGAATCGGAAATACTCTCTAGGGTTCCGACCAAGTCTCTAGC-A 84
|||||||| ||||| | ||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 17 ATCTTCCAGACGAATTGGAATCGGAAATACTCTCTAGGGTTCCGGCGAAGTCTCTAGCGA 76
Query 85 AAGTTGCAA-ACTACATGCAAACGATGGTACGCTTTATTCAGAGATCCGAGATTCGTGAA 143
|| || || |||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 77 AA--TGGAAGACTATTTGCAAACGATGGTACGCTTTGTTCAGAGATCCGAGATTCGTGAA 134
Query 144 GAAGAACTT-TGTAA 157
||||||||| |||||
Sbjct 135 GAAGAACTTGTGTAA 149
> AT3G17490.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5984827-5985993 FORWARD LENGTH=1167
Length=1167
Score = 154 bits (83), Expect = 2e-36
Identities = 235/302 (78%), Gaps = 35/302 (12%)
Strand=Plus/Plus
Query 217 GATTT-GAAAATAACCA-AAATCTTTCACTGTGACGGTTTAATATTATGCTCCACTAAG- 273
||||| | |||| | || |||||| || ||| ||||||||||||||||||||||| |||
Sbjct 292 GATTTCG-AAAT-ATCACAAATCTATCCCTGCGACGGTTTAATATTATGCTCCACGAAGC 349
Query 274 GAAAACACTAGACTCGTTGTTTGGAACCCAC-GTACCGGTCAAACCAGGTGGATCAAACG 332
| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 350 G-TAACACTAGACTCGTGGTTTGGAACCC-CTGTACCGGTCAAACCAGGTGGATCAAACG 407
Query 333 CAGTGATT-GTTACCGGA-GTGAGGATTTGTATTG-TCTTGGATACGTA-AACAGCAAGT 388
||| || | || | ||| ||| | || | ||| | ||||||| | | ||||||||||
Sbjct 408 CAG-GAATCGT-A--GGATGTGTG-ATACCT-TTGCTTTTGGATATG-ACAACAGCAAGT 460
Query 389 CTTCTTACC--A-TAGCCACAAAATCTTGAGG-TATTGCTTTTAT-TACAACGACCAGAA 443
|||||| || | || | |||||||| ||||| | |||| | || || ||| || |
Sbjct 461 CTTCTTGCCTTAATAACTACAAAATCCTGAGGGT-TTGCGAAAAAATAAAAGGAC-AGCA 518
Query 444 TGTTTGTGTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGA 503
||||| || |||| | ||| ||| ||||||||| |||||||||||||||| ||
Sbjct 519 -GTTTGAGTA--TGAA----A--TCTTTGAGTTTAGCTCTAATTCATGGAGGGTTCTCGA 569
Query 504 TG 505
||
Sbjct 570 TG 571
> AT3G17265.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5899515-5900637 REVERSE LENGTH=1038
Length=1038
Score = 148 bits (80), Expect = 8e-35
Identities = 125/145 (86%), Gaps = 10/145 (7%)
Strand=Plus/Plus
Query 13 ATGATGATTT-CTGATCTTCCACAC-GAACTAGAATCGGAAATACTCTCTAGGGTTCC-G 69
|||||| ||| || ||||||||| | || |||||||||||||||||||||||||||| |
Sbjct 1 ATGATG-TTTGCTTATCTTCCAC-CTGATTTAGAATCGGAAATACTCTCTAGGGTTCCTG 58
Query 70 ACCA-AGTCTCTAGCA-AAGTTGCAAACTACATGCAAACGATGGTACGCTTTATTCAGAG 127
||| | | |||| | || ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 59 -CCACATT-TCTAAAAGAA-TTGCAAACTACTTGCAAACGATGGTACGCTTTATTTAGAG 115
Query 128 ATCCGAGATTCGTGAAGAAGAACTT 152
|||||| |||||| |||||||||||
Sbjct 116 ATCCGATATTCGTCAAGAAGAACTT 140
> AT3G17500.1 | Symbols: | F-box family protein | chr3:5986685-5988498
FORWARD LENGTH=1317
Length=1317
Score = 113 bits (61), Expect = 3e-24
Identities = 208/277 (75%), Gaps = 17/277 (6%)
Strand=Plus/Plus
Query 234 AATCTTTCACTGTGACGGTTTAATATTATGCTCCACTAAGGAAAAC-ACTAGACTCGTTG 292
|||||||||||| || |||||| | |||||| |||| | || || | |||||| | |
Sbjct 285 AATCTTTCACTGCGATGGTTTATTGTTATGCACCAC-CA--AAGACGA-TAGACTTGAGG 340
Query 293 TTTGGAACCCACGTACCGGTCAAACCAGGTGGATCAAACGCAGTGAT-TGTTACCGGAGT 351
|||||||||| |||| || ||||||||| || || ||| |||| || |||| || |
Sbjct 341 TTTGGAACCCTTGTACTGGCCAAACCAGGCGGGTCCAACACAGT-ATACATTACAAGACT 399
Query 352 GAGGATTTGTATTG-TCTTGGATACGTAAACAGCAAGTCTTCTTACCATAGCCACAAAAT 410
| | || ||| |||||| ||||| |||| ||| | ||| ||||||| |||||||
Sbjct 400 AACTCTGAGT-TTGTTCTTGGGTACGTCAACAACAA--C-TCTCGCCATAGCTACAAAAT 455
Query 411 CTTGAGGTA-TTGCTTTTATTACAACGACCAGAATGTTTGTGTTGGTGAATTTGAGATCT 469
||||||||| | | ||| |||| | | | | | | | ||| |||| || || ||||
Sbjct 456 CTTGAGGTACTGGAATTT-TTAC-ATGTCTA-ACT-ACCGAGTTAGTGAGTTCGAAATCT 511
Query 470 ATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGA 506
|||||||||||||||||||||||||| || |||||||
Sbjct 512 ATGACTTTAGCTCTGATTCATGGAGGTTTATTGATGA 548
> AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8031341-8032459 REVERSE LENGTH=1119
Length=1119
Score = 78.7 bits (42), Expect = 1e-13
Identities = 50/54 (93%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 451 GTTGGTGAATTTGAGATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGAT 504
|||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 505 GTTGATGAGTTTGAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGAT 558
> AT4G17200.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:9651108-9652253 FORWARD LENGTH=1146
Length=1146
Score = 69.4 bits (37), Expect = 7e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 466 ATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 505
||||| ||||||||||||||||||||||||||||||||||
Sbjct 493 ATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 532
> AT1G54550.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:20369651-20370986 FORWARD LENGTH=1336
Length=1336
Score = 60.2 bits (32), Expect = 4e-08
Identities = 83/105 (79%), Gaps = 13/105 (12%)
Strand=Plus/Plus
Query 475 TTTAGCTCTGATTCATGGAGGGTTCTTGATGACTGCACTCATA-ACTGGG--G--CT-TA 528
|||||||||||||||||||||||||||||| | || | | ||| | ||| | || |
Sbjct 558 TTTAGCTCTGATTCATGGAGGGTTCTTGAT-ATTG-A-T-ATAGATTGGCATGAACTGTT 613
Query 529 T--TCTGCAATGGCATGTCTTTGAAAGGAAATACTTACTTTGTTG 571
| || |||| || |||||||||| ||||||||||||||| |||
Sbjct 614 TAGTCA-CAATAGCGTGTCTTTGAAGGGAAATACTTACTTTTTTG 657
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 475 TTTAGCTCTGATTCATGGAGGGTTCTTGATG 505
|||||||||||||||||||||||||||||||
Sbjct 587 TTTAGCTCTGATTCATGGAGGGTTCTTGATG 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54517791870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5