BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479232 Length=1116 Score E Sequences producing significant alignments: (Bits) Value AT3G17560.1 | Symbols: | F-box and associated interaction doma... 1387 0.0 > AT3G17560.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6006762-6008003 FORWARD LENGTH=1242 Length=1242 Score = 1387 bits (751), Expect = 0.0 Identities = 877/937 (94%), Gaps = 12/937 (1%) Strand=Plus/Plus Query 188 TAGCTTCAGAAGCCATTATATCTCAAGCATTTCACTGTGATGGTTTATTGCTATGCACCA 247 ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 306 TAG-TTCAGAAGCTATTATATCTCAAGCCTTTCACTGTGATGGTTTATTGCTATGCACCA 364 Query 248 CCAAGGAAAACCGATTAGTGGTTTGGAACCCGTTTTCGGGGCAAACCAGATGGTTGCAAC 307 |||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||| Sbjct 365 CCAAGGAAAACCGATTAGTGGTTTTGAACCCGTTTTCAGGGCAAACCAAATGGTTGCAAC 424 Query 308 TGCAAAATCGTGGTAGGATAGATGAGGCCTATGTTCTCGGATACGACAACAGGGACGTGT 367 ||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||| ||| Sbjct 425 CACAAAATCGTTGTAAGATAGATGAGGCCTATGTTCTTGGATACGACAACAGTGACTTGT 484 Query 368 GCCATAGCTACAAAATCTTGAGTTTTCCGGATTTATACGAACAAGAATTGGAAACTATCA 427 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 485 GCCATAGCTACAAAATCTTGAGTTTTCCGGATCTATACGAACAAGAATTGGAAACTATCA 544 Query 428 AGAATGCATGGAAGGATCTTGATGTCACTCCCGAAGGCGACTTAGAATTGAAAATCAATG 487 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 545 AGAATGCAGGGAGGGATCTTGATGTCACTCCCGAAGGCGACTTAGAATTGAAAACCGATG 604 Query 488 ATTCTAGCTCTAATTCATGGAGGAGAAATCTTGGTGTCACTCCCCTA-GGCGACTTAGAA 546 ||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||| | Sbjct 605 ATTTTAGCTCTAATTCATGGAGGAGAAATCTTGGTGTCACTCCCC-ACGGCGGCTTAGGA 663 Query 547 TTGAAACTATATGATTTTAGCTCTAATTCATGGAAGCATCTTGATGTCATCACTCCCGAA 606 |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 664 TTGAAAATATATGATTTTAGCTCTAATTCATGGAAGAAACTTGATGTCATCACTCCCGAA 723 Query 607 GGTTGCTTAAAATCTTATGGCGTGTCATTGAAGGGAAATGCTTATTGGGTGTACGTGTCT 666 |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| Sbjct 724 GGTTGCTTAAAATCTTATGGTGTGTCACTGAAGGGAAATGCTTATTGGGTGTACATGTCT 783 Query 667 AATCGAAGAGGAGTTAACGACTACTCTATACTTAGTTTTGATTTTTCAACAGAGAGATTT 726 || ||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 784 AAACGAAGAGGAGTCAACGACTACTCTCTACTTAGTTTTGATTTTTCAACAGAGAGTTTT 843 Query 727 CAACATTTGTGTGTTCCCTTTCATCAGGAAGCAGATTGTTTTGATACCATGGCTCTCTCG 786 ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 844 CAACATTTGTGTGTTCCCTTTCATCAGGAAGCAGATTGTTTTGGTACTATGGCTCTCTCA 903 Query 787 GTTTTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGTAGCGAGACACTAAAGGTGGAA 846 ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 904 GTTGTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGTTGCGAGACTCTAAAGGTGGAA 963 Query 847 ATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAGAAAGTTCTTAATAGTG 906 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 964 ATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAAAAAGTTCTTAACAGTG 1023 Query 907 GATTTAGAACCTCATCT-CC-C-T------ATGTTTTCGTGTCGAATGAGTTTCTTCATC 957 ||||||||||||||||| || | | |||||||||||||| ||||||||||||||| Sbjct 1024 GATTTAGAACCTCATCTACCTCATCTCCTTATGTTTTCGTGTCGCATGAGTTTCTTCATC 1083 Query 958 TACGAGGAGAAGAAAGTTGCCGTGTGTTGTGACAGAGATAACAAGGTATACATTATTGGA 1017 ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 1084 GACGAGGAGAAGAAAGTTGCCGTGTGTTGTGACAGAGATAACAAGGTACACGTTGTTGGA 1143 Query 1018 GAAGATGAATACAAAGTATCTTCCGGTTTTTATTTTGTAGATTTTGAAGGCATAACATGT 1077 ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 1144 GAAGATGAATACAGAGTATCTTCTGGTTTTTATTTTCTAGATTTTGAAGGCATAACATGT 1203 Query 1078 TGCCTAACTGTCTTTGGTTATGTACCAAGATTGGTTT 1114 ||||| ||||||||||||||||| ||||||||||||| Sbjct 1204 TGCCTGACTGTCTTTGGTTATGTTCCAAGATTGGTTT 1240 Score = 270 bits (146), Expect = 2e-71 Identities = 172/185 (93%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 1 ATGAGGTCAGAAATCGTAAGAGAAACAAAGTTAATCTTCGATCTTCCACAAGATGTGATA 60 ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| Sbjct 1 ATGAGGTCAGAAATCACAAGAGAAACAAAGTTGCTCTTCGATCTTCCACAGGATGTGATA 60 Query 61 GAGGAGATTTTTTCTAAGGTTCCGGTGACATCTCTAAGAAGATTACGATCTACTTGCAAA 120 || ||||| || ||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 61 GAAGAGATATTCTCTAAGGTTCCGGTGACATGTCTAAGAAGAATACGATCTACTTGCAAA 120 Query 121 AGATTGTACGCTTTACTCAAAGATCAAGGATTCATCAAAAAACATTTTGCTAAATCAGCA 180 ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 121 AGATTGTACGCTTTACTCAAAGATCGTGGATTCATCAGAAAACATTTTGCTAAATCAGCA 180 Query 181 AGGCA 185 ||||| Sbjct 181 AGGCA 185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54718594050 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5