BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479232
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17560.1 | Symbols: | F-box and associated interaction doma... 1387 0.0
> AT3G17560.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6006762-6008003 FORWARD LENGTH=1242
Length=1242
Score = 1387 bits (751), Expect = 0.0
Identities = 877/937 (94%), Gaps = 12/937 (1%)
Strand=Plus/Plus
Query 188 TAGCTTCAGAAGCCATTATATCTCAAGCATTTCACTGTGATGGTTTATTGCTATGCACCA 247
||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 306 TAG-TTCAGAAGCTATTATATCTCAAGCCTTTCACTGTGATGGTTTATTGCTATGCACCA 364
Query 248 CCAAGGAAAACCGATTAGTGGTTTGGAACCCGTTTTCGGGGCAAACCAGATGGTTGCAAC 307
|||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||
Sbjct 365 CCAAGGAAAACCGATTAGTGGTTTTGAACCCGTTTTCAGGGCAAACCAAATGGTTGCAAC 424
Query 308 TGCAAAATCGTGGTAGGATAGATGAGGCCTATGTTCTCGGATACGACAACAGGGACGTGT 367
||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 425 CACAAAATCGTTGTAAGATAGATGAGGCCTATGTTCTTGGATACGACAACAGTGACTTGT 484
Query 368 GCCATAGCTACAAAATCTTGAGTTTTCCGGATTTATACGAACAAGAATTGGAAACTATCA 427
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 485 GCCATAGCTACAAAATCTTGAGTTTTCCGGATCTATACGAACAAGAATTGGAAACTATCA 544
Query 428 AGAATGCATGGAAGGATCTTGATGTCACTCCCGAAGGCGACTTAGAATTGAAAATCAATG 487
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 545 AGAATGCAGGGAGGGATCTTGATGTCACTCCCGAAGGCGACTTAGAATTGAAAACCGATG 604
Query 488 ATTCTAGCTCTAATTCATGGAGGAGAAATCTTGGTGTCACTCCCCTA-GGCGACTTAGAA 546
||| ||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |
Sbjct 605 ATTTTAGCTCTAATTCATGGAGGAGAAATCTTGGTGTCACTCCCC-ACGGCGGCTTAGGA 663
Query 547 TTGAAACTATATGATTTTAGCTCTAATTCATGGAAGCATCTTGATGTCATCACTCCCGAA 606
|||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 664 TTGAAAATATATGATTTTAGCTCTAATTCATGGAAGAAACTTGATGTCATCACTCCCGAA 723
Query 607 GGTTGCTTAAAATCTTATGGCGTGTCATTGAAGGGAAATGCTTATTGGGTGTACGTGTCT 666
|||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||
Sbjct 724 GGTTGCTTAAAATCTTATGGTGTGTCACTGAAGGGAAATGCTTATTGGGTGTACATGTCT 783
Query 667 AATCGAAGAGGAGTTAACGACTACTCTATACTTAGTTTTGATTTTTCAACAGAGAGATTT 726
|| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 784 AAACGAAGAGGAGTCAACGACTACTCTCTACTTAGTTTTGATTTTTCAACAGAGAGTTTT 843
Query 727 CAACATTTGTGTGTTCCCTTTCATCAGGAAGCAGATTGTTTTGATACCATGGCTCTCTCG 786
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 844 CAACATTTGTGTGTTCCCTTTCATCAGGAAGCAGATTGTTTTGGTACTATGGCTCTCTCA 903
Query 787 GTTTTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGTAGCGAGACACTAAAGGTGGAA 846
||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 904 GTTGTTAGAGAAGAACATCTTTCGTTGTTATATCAGAGTTGCGAGACTCTAAAGGTGGAA 963
Query 847 ATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAGAAAGTTCTTAATAGTG 906
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 964 ATATGGATGACCAAAGAGATTGATACAACATTTGTGTCATGGAAAAAGTTCTTAACAGTG 1023
Query 907 GATTTAGAACCTCATCT-CC-C-T------ATGTTTTCGTGTCGAATGAGTTTCTTCATC 957
||||||||||||||||| || | | |||||||||||||| |||||||||||||||
Sbjct 1024 GATTTAGAACCTCATCTACCTCATCTCCTTATGTTTTCGTGTCGCATGAGTTTCTTCATC 1083
Query 958 TACGAGGAGAAGAAAGTTGCCGTGTGTTGTGACAGAGATAACAAGGTATACATTATTGGA 1017
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1084 GACGAGGAGAAGAAAGTTGCCGTGTGTTGTGACAGAGATAACAAGGTACACGTTGTTGGA 1143
Query 1018 GAAGATGAATACAAAGTATCTTCCGGTTTTTATTTTGTAGATTTTGAAGGCATAACATGT 1077
||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1144 GAAGATGAATACAGAGTATCTTCTGGTTTTTATTTTCTAGATTTTGAAGGCATAACATGT 1203
Query 1078 TGCCTAACTGTCTTTGGTTATGTACCAAGATTGGTTT 1114
||||| ||||||||||||||||| |||||||||||||
Sbjct 1204 TGCCTGACTGTCTTTGGTTATGTTCCAAGATTGGTTT 1240
Score = 270 bits (146), Expect = 2e-71
Identities = 172/185 (93%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTCAGAAATCGTAAGAGAAACAAAGTTAATCTTCGATCTTCCACAAGATGTGATA 60
||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1 ATGAGGTCAGAAATCACAAGAGAAACAAAGTTGCTCTTCGATCTTCCACAGGATGTGATA 60
Query 61 GAGGAGATTTTTTCTAAGGTTCCGGTGACATCTCTAAGAAGATTACGATCTACTTGCAAA 120
|| ||||| || ||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 61 GAAGAGATATTCTCTAAGGTTCCGGTGACATGTCTAAGAAGAATACGATCTACTTGCAAA 120
Query 121 AGATTGTACGCTTTACTCAAAGATCAAGGATTCATCAAAAAACATTTTGCTAAATCAGCA 180
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 121 AGATTGTACGCTTTACTCAAAGATCGTGGATTCATCAGAAAACATTTTGCTAAATCAGCA 180
Query 181 AGGCA 185
|||||
Sbjct 181 AGGCA 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5