BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479233
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17570.1 | Symbols: | F-box and associated interaction doma... 1537 0.0
> AT3G17570.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6009407-6010562 FORWARD LENGTH=1156
Length=1156
Score = 1537 bits (832), Expect = 0.0
Identities = 1059/1166 (91%), Gaps = 25/1166 (2%)
Strand=Plus/Plus
Query 5 TGTTTACAAATCTTCCACGAGATTTAGAATCGGAAATACTCTCAAGAGTTCCTGCCAGAT 64
||||||| |||||||||||||||||||| | |||||||||||||||||||| |||| ||
Sbjct 8 TGTTTACCGATCTTCCACGAGATTTAGAAACAGAAATACTCTCAAGAGTTCCCGCCACAT 67
Query 65 CTCTACAAAAACTGAAACCTACTTGCAAACGGTGGTACACTTTATTCAAAGATCCGGAAT 124
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 CTCTACAAAAATTGAAGCCTACTTGCAAACGGTGGTACACTTTATTCAAAGATCCGGAAT 127
Query 125 TCCTCAAGAAGCACGTGGGTAGAGCGGAAAGGGAGGTGCTCTCACTGATGGGTTTCAGGG 184
||||||||||||| |||||||||||||||||||||||| | || |||||| || ||||||
Sbjct 128 TCCTCAAGAAGCATGTGGGTAGAGCGGAAAGGGAGGTGATTTCGCTGATGAGTCTCAGGG 187
Query 185 TTTATTCAGTTAGTGTCAATCTCTCTGGAATCCACAGCAGCGTTGATCCACCCATTGAAA 244
|||||||| ||||||| |||||||||||||||||||||||| | ||||||
Sbjct 188 TTTATTCACTTAGTGTTAATCTCTCTGGAATCCACAGCAGC---G---------TTGAAA 235
Query 245 TGACAGGCATGTTTAACAGTCTGAAGGATTCTGCAA-ATGTCAAAATAT-TGGAAATCTG 302
||||||| ||||| |||||||| |||||||||| || |||||||||||| | || |||
Sbjct 236 TGACAGGTATGTTAAACAGTCTCAAGGATTCTG-AAGATGTCAAAATATCT-GACATCAC 293
Query 303 TGAGTGCAACGGTTTATTATTGTGCACCACCAATGACAGTAGACTCGTGGTTTGGAATCC 362
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct 294 TGAGTGCAACGGTTTATTATTGTGCACCACCGATGACAGTAGACTTGTGGTTTGGAACCC 353
Query 363 TTATACTGGTGAAACCAGGTGGATCCCATACAAATCCAGCACACGTTTTGCAATGTACCA 422
||||||||||||||||||||||||||| |||||||||| | ||| || || |||||||||
Sbjct 354 TTATACTGGTGAAACCAGGTGGATCCCTTACAAATCCAACTCACCTTATGAAATGTACCA 413
Query 423 TAAGTTTGTTTTAGGATACGACAACAGC---AAATCTTGCTATGGCTACAAAATCTTGAG 479
||||||||||| ||||||||||||| | |||||| ||||| ||||||||||||||||
Sbjct 414 GAAGTTTGTTTTGGGATACGACAACACCAATAAATCTCGCTATAGCTACAAAATCTTGAG 473
Query 480 GTGTTACCACTTCTACATTGACTTTGGTTTTGAGTATGAAATCTATGATTTTAACTCTGA 539
|||||||||| || || |||||||||| ||||| |||||||||||| ||||||||| |
Sbjct 474 GTGTTACCACGGCTTGATCGACTTTGGTTATGAGTTTGAAATCTATGAGTTTAACTCTCA 533
Query 540 TTCATGGAGGCGTTTTTATGACAACTCTCCTAATTGTTCCTTT-ATATCTAAGGGCGTGA 598
|||||||||| | |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 534 TTCATGGAGGAGATTTTATGACAACTCTCCTAATTGTTCCTTTGA-ATCTAAGGGCGTGA 592
Query 599 CATTGAAGGGAAATACTTACTGGTTTACTTCAGATACTGAAGGCCGCCA-ATTCATACTC 657
|| ||||||| || |||||||||||| |||||||||||||||||||||| | ||||||||
Sbjct 593 CACTGAAGGGCAACACTTACTGGTTTGCTTCAGATACTGAAGGCCGCCACA-TCATACTC 651
Query 658 ATGTTTAATTTCACAACAGAGAAATTTGGACGTCTCTCTCTTCCTTATCAGAGTGGTGGT 717
| |||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 652 AGGTTTGATTTCGCAACAGAGAGATTTGGACGTCTCTCTCTTCTTTATCAGAGTGGTGGT 711
Query 718 TATGTTGATGATGTTGTGGAGACTGGGGTTTTATCGGCTGTTAGAGAAGAGAAACTTGCG 777
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 712 TATGTTGATAATGTTGTGGAAACTGGGGTTTTATCGGCTGTTAGAGAAGAGAAACTTGCG 771
Query 778 TTGTTATATGAGAGGTTTGATGAGCTTACTGATACATCAGTGATGAAGATATGGGTGACC 837
|||||||||||||||||||||||||| | |||| |||||| ||||||||||||||||||
Sbjct 772 TTGTTATATGAGAGGTTTGATGAGCTGAATGATTCATCAGAGATGAAGATATGGGTGACG 831
Query 838 AATACTAAAATCGAT-GAGGCCAAAGACTTGTCGTGGAGCGACTTCTTGGTAGTGGATTC 896
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AATACTAAAATCG-TCGAGGCCAAAGACTTGTCGTGGAGCGACTTCTTGGTAGTGGATTC 890
Query 897 CTGTAAATTTATGGTACCAAGGATGACGAATGTGATGAGTTTCTTGGTGGACGAGGAGaa 956
|| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 891 CTCTAAATTTATGGTAACAAGGATGACGAATGTGATGAGTTTCCTGGTGGACGAGGAGAA 950
Query 957 aaaaaTGGTTGTGTTTTGTGATACATACAGTGATCAAAACATGACCAGATTTTACATTGT 1016
||||||||| ||| ||||||||||| ||| ||||||| | |||| |||||||||||||||
Sbjct 951 AAAAATGGTGGTGGTTTGTGATACAGACATTGATCAACATATGAACAGATTTTACATTGT 1010
Query 1017 CGGAGAGGATATATACAAAGAAGTTTATAATGATATTACAGAGGGATCGTTTTCCTATTG 1076
|||||||||||||||||||||||||||||| |||||| || |||||| ||||||||||||
Sbjct 1011 CGGAGAGGATATATACAAAGAAGTTTATAAAGATATTGCACAGGGATGGTTTTCCTATTG 1070
Query 1077 GCCACGTCTCGTCAGTTATGCACCAAGTCTGGTTCAAATTCAGCAAGGTAAAGTGAATCC 1136
||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1071 GCCACTTCTCATCAGTTATGCTCCAAGTCTGGTTCAAATTCAGCAAGGTAAAGTGATTCC 1130
Query 1137 TGGAGGCAAAAGAAAAAGGTGATTAG 1162
|||||||||||||||||||||||||
Sbjct 1131 CGGAGGCAAAAGAAAAAGGTGATTAG 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5