BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479235
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17590.2 | Symbols: BSH | transcription regulatory protein S... 1380 0.0
> AT3G17590.2 | Symbols: BSH | transcription regulatory protein
SNF5, putative (BSH) | chr3:6017212-6019666 REVERSE LENGTH=905
Length=905
Score = 1380 bits (747), Expect = 0.0
Identities = 847/893 (95%), Gaps = 16/893 (2%)
Strand=Plus/Plus
Query 1 CACTCTCTCTCGCTGACTCTGTTC-AAAGC-CAAATTGTGAAA-TT-GGGGTTTAAGGAT 56
||| |||||||||||||||| ||| ||| | ||| |||||||| || |||||||||||||
Sbjct 19 CACACTCTCTCGCTGACTCTCTTCGAAA-CTCAATTTGTGAAATTTGGGGGTTTAAGGAT 77
Query 57 GAAGGGTTTAGTGTCTACTGGTTGGAAAGGTCCCGTCAAGTTTAGG----AT--GCCCAC 110
|||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 78 GAAGGGTTTAGTGTCTACTGGTTGGAAAGGTCCCGTCAAGTTCAGGATCTATAGGCCCAC 137
Query 111 TGCTGAAAACTTGGTACCAATTCGTTTGGACATTCAATTCGAGGGTCAGCGTTACAAAGA 170
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 138 TGCTGAAAACTTGGTACCTATTCGATTGGACATTCAATTCGAAGGTCAGCGTTACAAAGA 197
Query 171 TGCTTTCACTTGGAACCCTTCAGACCCGGATAATGAAGTCGTTGTCTTTGCCAAAAGAAC 230
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 198 TGCTTTCACTTGGAACCCTTCAGACCCGGATAATGAAGTCGTTATCTTTGCCAAAAGAAC 257
Query 231 TGTTAAAGACTTGAAACTGCCCTCTGCATTTATCACTCAGATTGCCCAATCTATTCAGTC 290
|||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||
Sbjct 258 TGTTAAAGACTTGAAACTTCCCTATGCATTTGTCACTCAGATTGCCCAATCTATTCAGTC 317
Query 291 TCAGCTCTCAGACTTTCGGGCATATGAAGGACAAGATATGTACACTGGTGAAAAAATCAT 350
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 318 TCAGCTCTCAGACTTTCGGGCTTATGAAGGACAAGACATGTACACTGGTGAAAAAATCAT 377
Query 351 ACCAATTAAGCTTGATCTCCGAGTTAACCATACCCTCATCAAGGATCAGTTCTTGTGGGA 410
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 378 ACCAATTAAGCTTGATCTCCGAGTTAACCATACTCTCATCAAGGATCAGTTCTTATGGGA 437
Query 411 CCTAAACAATTTTGAGAGTGATCCTGAGGAATTCGCAAGAACCTTGTGCAAGGATTTAGG 470
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 438 CCTAAACAATTTTGAGAGTGATCCTGAGGAATTTGCAAGAACCTTGTGCAAGGATTTAGG 497
Query 471 TGTTGAAGATCCTGAAGTTGGACCTGCTGTTGCCTTTGCAATAAGGGAACAACTTTACGA 530
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TGTTGAAGACCCTGAAGTTGGACCTGCTGTTGCCTTTGCAATAAGGGAACAACTTTACGA 557
Query 531 GATTGCAATTCAAAGTGTGGCTTCAGCTAGGGAGAGTAGATTAAGTAAGAAAGGCCGCAG 590
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 558 GATTGCAATTCAAAGTGTGGCTTCAGCTAGGGAGAGTAGATTAAGCAAGAAAGGCCGCAG 617
Query 591 AGGATCTGATCATGGTTCAGCGAGCAAGGCAAGTGGCTTGTCAATGGACTTAATGAAGTT 650
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 618 AGGATCTGATCATGGTTCAGCGAGCAAGGCAAGTGGCCTGTCAATGGACTTAATGAAGTT 677
Query 651 ATTCAGCTTTAAGTCCAGTGTAGTTCGGAAAAGGAAAGACTTGGATGTTTATGAACCAGT 710
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 ATTCAGTTTTAAGTCCAGTGTAGTTCGGAAAAGGAAAGACTTGGATGTTTATGAACCAGT 737
Query 711 TGTGGATCTGCTAACAAGTGAGGAAGTTGATGCGCTTGAAGCGAGGGCAGAGAGGCATGC 770
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||
Sbjct 738 TGTGGATCTGCTAACAAGTGAGGAAGTTGATGCGCTTGAAGCCAGGGAAGAGAGACATGC 797
Query 771 AAGGTAAAGAGTTTCGTTTACATGTATATTTATTTCTTAGGGCAGGACACTCAAAATATG 830
||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 798 AAGGTGAAGAGTTTCGTTTACATGTATAAATATTTCTTAGGGCA--ACACTCAAAATATG 855
Query 831 TTGTATCATGCTTCTTAACTAAAGTTTATGATATTAAGACAATCTTTAATGAG 883
||||||||||||| |||| |||| |||||||||||||||||||| |||||
Sbjct 856 TTGTATCATGCTT---AACTTGAGTTAATGATATTAAGACAATCTTTTATGAG 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43201366420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5