BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479237
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17609.2 | Symbols: HYH | HY5-homolog | chr3:6023866-6024698... 977 0.0
> AT3G17609.2 | Symbols: HYH | HY5-homolog | chr3:6023866-6024698
FORWARD LENGTH=668
Length=668
Score = 977 bits (529), Expect = 0.0
Identities = 615/656 (94%), Gaps = 7/656 (1%)
Strand=Plus/Plus
Query 1 GCAATATCCTTTGGTTTAATATTCTCTTGAACCTCTTACCTCTCTACTCTGGTCTTTACC 60
||||| ||||||||||| |||||||||| ||||||||||||||||| ||| ||||||| |
Sbjct 19 GCAATTTCCTTTGGTTTGATATTCTCTTCAACCTCTTACCTCTCTATTCTCGTCTTTAGC 78
Query 61 AAAATCTCAAAAGACAAAAAGATATTGATGTCTCTTCAACGACCCAATGGGCACTCGAGT 120
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 79 AAAATCTCAAAAGACAAAAAGATATTGATGTCTCTCCAACGACCCAATGGGAACTCGAGT 138
Query 121 TCGTCTTCTTCCCACATGAAGCACAAAACTGAGGAAAGTGATGAGGAGTTGTTGATGGTT 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 TCGTCTTCTTCCCACAAGAAGCACAAAACTGAGGAAAGTGATGAGGAGTTGTTGATGGTT 198
Query 181 CCTAACATGGAAGCAGCTGGATCAACATGTGTTCTAAGCAGCAGCGCCGATGATGGAGTC 240
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 199 CCTGACATGGAAGCAGCTGGATCAACATGTGTTCTAAGCAGCAGCGCCGACGATGGAGTC 258
Query 241 AATAATCCGGAGCTTGACCCGACTCAAAATGAAGTCTCTACCGCTAAACGCCGCCGTGGT 300
|| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 259 AACAATCCGGAGCTTGACCAGACTCAAAATGGAGTCTCTACAGCTAAACGCCGCCGTGGA 318
Query 301 CGAAACCCAGTTGATAAAGAGTATAGAAGCCTCAAGAGATTGTTGAGGAACAGAGTATCA 360
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 319 AGAAACCCTGTTGATAAAGAATATAGAAGCCTCAAGAGATTATTGAGGAACAGAGTATCA 378
Query 361 GCACAACAAGCGAGAGAGAGGAAGAAAGTGTATGTGAGTGATTTGGAATCAAGAGCTAAT 420
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 GCGCAACAAGCAAGAGAGAGGAAGAAAGTGTATGTGAGTGATTTGGAATCAAGAGCTAAT 438
Query 421 GAGTTACAGAACAACAATGATCAACTTGAAGAGAAGATATCGACTTTGACGAACGAGAAC 480
|||||||||||||||||||| || || ||||||||||| || ||||||||||||||||||
Sbjct 439 GAGTTACAGAACAACAATGACCAGCTCGAAGAGAAGATTTCTACTTTGACGAACGAGAAC 498
Query 481 ACAATGCTTCGTAAAATGCTTATTAACACAAGGCCTAAAGCTGATGACAATCACTAAATA 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 499 ACAATGCTTCGTAAAATGCTTATTAACACAAGGCCTAAAACTGATGACAATCACTAAATA 558
Query 541 TTTACCCTTGAATCCATTGTTCAGTGTTGTATAATTATCTTA-TTTAtttttttGGTTTC 599
||||||||| |||||||||||||||||||||| |||||||| ||| |||||| |||||
Sbjct 559 TTTACCCTTTAATCCATTGTTCAGTGTTGTATGATTATCTTTCTTTCTTTTTT-GGTTTT 617
Query 600 GGTTTGTATACAATTTTTGTTCGAATAACAATCAGTTCACTTTGAGCATCATTGTC 655
|||||||||||| ||||||||||||||||| | | |||||||||||||||||||
Sbjct 618 GGTTTGTATACACTTTTTGTTCGAATAACA-T---T-CACTTTGAGCATCATTGTC 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31647512610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5