BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479245
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17640.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1018 0.0
> AT3G17640.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:6032393-6033583 FORWARD LENGTH=1191
Length=1191
Score = 1018 bits (551), Expect = 0.0
Identities = 600/624 (96%), Gaps = 2/624 (0%)
Strand=Plus/Plus
Query 1 ATGAGCTACACTTTCTTTCTCCTTCTGCTCACTCTCGTCCACTCCACTTTCTCTTCATTA 60
|||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 1 ATGAGCTACACTTTCTTTCTCCTTTTGCTCTCTCTTGTCCACTCCACTTTCTCTTCATTA 60
Query 61 GCTCCTACGGATCGAGCCGCGCTCCAATCCATCAGAGACTCTTTAACCGACATGCCTGGT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GCTCCTACGGATCGAGCCGCGCTCCAATCCATCAGAGACTCTTTAACCGACATGCCCGGT 120
Query 121 TCAGCCTTCTTCTCCTCTTGGGACTTCACAGTCCCTGACCCTTGTTCCTCCTTCTCTGGC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TCAGCCTTCTTCTCCTCTTGGGACTTCACAGTTCCTGACCCTTGTTCCTCCTTCTCTGGC 180
Query 181 CTTACCTGCTCTTCTCTCGGCCGTGTCACCGGCTTAACTCTTGGCCCTAATCTCTCAGGT 240
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTACCTGCTCTTCTCGCGGCCGTGTCACCGGCTTAACTCTTGGCCCTAATCTCTCAGGC 240
Query 241 TCTCTCTCCCCTTCCATCTCCATTCTAACACACTTAAACCAACTCATTCTCTACCCTGGC 300
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 241 TCTCTCTCCCCTTCCATCTCCATTCTAACCCACTTAACCCAACTCATTCTCTACCCCGGT 300
Query 301 TCAGTCACCGGTCCTCTCCCTCCTCGGTTCGATTCCCTCCCTCTCCTTAGAGTCATTTCC 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TCAGTCACCGGTCCTCTCCCTCCTCGGTTCGATTCCCTCCCTCTCCTTCGAGTCATTTCC 360
Query 361 TTAACAAGAAACCGCTTAACCGGTCCTATACCAGTTTCTTTCTCATCTCTCTCAAACCTC 420
|||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 361 TTAACAAGAAACCGTTTAACCGGTCCTATACCCGTATCTTTCTCATCTCTCTCAAATCTC 420
Query 421 CACACTCTTGACCTTAGCTATAACCAACTCTCAGGCTCTCTCCCTCCGTTTCTCACTACT 480
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 421 CACACTCTTGACCTTAGCTATAACCAACTCTCTGGCTCTCTCCCTCCTTTTCTCACCACT 480
Query 481 CTTCCTCGACTCAAAGTCCTTGTTTTAGCCTCAAACCAGTTCTCCAACAACCTTAAACCT 540
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 481 CTTCCTCGACTCAAAGTCCTTGTTTTAGCCTCAAACCATTTCTCCAACAACCTTAAGCCT 540
Query 541 GTCTCTAGCCCATTGTTCCATTTAGACCTAAAGATGAACCAAATCTCCGGCCAACTCCCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTCTCTAGCCCATTGTTCCATTTAGACCTAAAGATGAACCAAATCTCCGGCCAACTCCCA 600
Query 601 CCCGCTTTCCCCA-TCACTCTCCG 623
||||||||||| | | ||||||||
Sbjct 601 CCCGCTTTCCCGACT-ACTCTCCG 623
Score = 569 bits (308), Expect = 1e-161
Identities = 330/341 (97%), Gaps = 0/341 (0%)
Strand=Plus/Plus
Query 623 GCCATAACTCAATCTCCGGAGAGTTACCTCCTGCGCTCGTCGGAGCAGAGGCTCAGTTCT 682
||||||||||||||||||||||| || |||| ||||| ||||||||||||||| |||||
Sbjct 851 GCCATAACTCAATCTCCGGAGAGCTAACTCCCGCGCTTGTCGGAGCAGAGGCTTTGTTCT 910
Query 683 TGAACAATAACCGTCTCACAGGAGACATTCCAGAGGAATACGTCAAGAGCTTAATCAACG 742
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TGAACAACAACCGTCTCACTGGAGACATTCCAGAGGAATACGTCAAGAGCTTAATCAACG 970
Query 743 GTACAACAAAACAGCTCTTCTTGCAACATAACTACTTCACGAGATTCCCTTGGAACTCTG 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GTACAACAAAACAGCTCTTCTTGCAACATAACTACTTCACGAGATTCCCTTGGAACTCTG 1030
Query 803 GTCTCCAACTACCAGACTCTGTTTCGCTCTGTTTGTCATATAATTGTATGGAGACAGATC 862
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1031 GTCTCCAACTACCAGACTCTGTTTCGCTCTGTTTGTCATATAACTGTATGGAGACAGATC 1090
Query 863 CAGTCGTTGGTTTGTCCACGTGTCCGATCGAAGTTGCACCTCTGCTCTCAAGGCCTGCTT 922
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1091 CAGTCGTTGGTTTGTCCACGTGTCCGATCGAAGTTGCACCTCTGCTCTCAAGACCTGCTT 1150
Query 923 CACAATGTTCAAGATTCTATAATCACAGCTCCACTGGCTAA 963
||||||||||||||||||||||||||||||||||||| |||
Sbjct 1151 CACAATGTTCAAGATTCTATAATCACAGCTCCACTGGTTAA 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5