BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479249
Length=584
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17668.1 | Symbols: ENA | DnaJ/Hsp40 cysteine-rich domain su... 809 0.0
> AT3G17668.1 | Symbols: ENA | DnaJ/Hsp40 cysteine-rich domain
superfamily protein | chr3:6039603-6040489 FORWARD LENGTH=610
Length=610
Score = 809 bits (438), Expect = 0.0
Identities = 544/593 (92%), Gaps = 15/593 (3%)
Strand=Plus/Plus
Query 1 ACTGAAGAGTGACGGAGATGGCAGCGAACGCGTGTCTACCTCCGCCGGCGTTAATGGCCG 60
|||||||||||||||||||||| | ||||||||||||| ||||||||| | | ||||| |
Sbjct 21 ACTGAAGAGTGACGGAGATGGCGGTGAACGCGTGTCTATCTCCGCCGGAGATGATGGCTG 80
Query 61 TCC-GCGCAGAGGAAGGTGTTCCAAATTCAAAATCGACGCAGGGACAAACTAGGCTCTAT 119
||| || ||| |||||| ||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 81 TCCGGC-CAGGGGAAGGCGTTCCGAATTCAAAATCTACGCAGGGAAAAACTAGGCTCTAT 139
Query 120 CTCACCAAACCTTCATGGATAGTAAGAACTCAGTCAGGAGCTAAGACGTGTATGAAGAGG 179
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct 140 CTCACCAAACCTTCATGGATAGTCAGAACTCAGTCTGGAGCTAAGACGTGTATGAAGTCG 199
Query 180 AAGGCGAAAGGCCGGTGCGTAATCTGCCATGG-AGCTGGAAGAGTCGATTGTTTCAATTG 238
||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 200 AAGGCGAAAGGACGATGCGTAATCTGCCATGGAAG-TGGAAGAGTCGATTGTTTCAATTG 258
Query 239 CTGTGGGAAAGGGAGGACTAATTGTGTGGATGTGGAAATGCTTCCAAAAGGAGAATGGCC 298
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 259 TTGTGGGAAAGGGAGGACTAATTGTGTGGATGTGGAAATGCTTCCAAGAGGAGAATGGCC 318
Query 299 TAAATGGTGCAAGAGTTGTGGAGGGAGTGGATTAAGTGACTGTTCTCGCTGTCTTGGCAC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 TAAATGGTGCAAGAGTTGTGGAGGGAGTGGATTAAGTGACTGTTCTCGCTGTCTTGGCAC 378
Query 359 CGGAGAGTATAGATACATTATGGGTTTCCGCTTCTTAAACCAAAACGATGATGGCGATCC 418
||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 379 CGGAGAGTACAGATACATCATGGGTTTCCGCTTCTTAAACCAAAACGATGATGCCGATCC 438
Query 419 ACAATTATGATTTGCTGAAACTCTTAA---TCATGTCCTTGCCAGTTTTTGTATATGTTC 475
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 439 ACAATAATGATTTGGAGAAACTCTTAACGATCATGTCCTTGCCAGTTTTTGTATATGTCC 498
Query 476 AATGATGAGGCTTAAGACTTGTTTAGTAATGT---ATATGGTTTGCTCCTGACTTGTTGA 532
||||| |||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 499 AATGAGGAGGCTTAAGACTTGTTTAGTAATGTTGTATATGGTT-GCTCCTGACTTGTTAA 557
Query 533 TATTGTCTGCAGTCTTCAAGGTCAT-TATGTTGCAAGTGAAGAGAAATCGCCA 584
|||||| || | ||||||||| || | |||||||||| |||||||||| |||
Sbjct 558 TATTGTTTGTAATCTTCAAGG--ATGT-TGTTGCAAGTAAAGAGAAATCACCA 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28080888173
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5