BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479250
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17670.2 | Symbols: | tetratricopeptide repeat (TPR)-contai... 1195 0.0
> AT3G17670.2 | Symbols: | tetratricopeptide repeat (TPR)-containing
protein | chr3:6040820-6042588 FORWARD LENGTH=885
Length=885
Score = 1195 bits (647), Expect = 0.0
Identities = 704/732 (96%), Gaps = 1/732 (0%)
Strand=Plus/Plus
Query 1 GTGGTTCGATATTCTTATCGTTATGTCTTCCGTCGCTTTGCCGGCGATGAGCTGCCGGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 GTGGTTCGATATTCTTATCGTTATGTCTTCCGTCGCTTTGCCGGCGATGAGCTGCCGGAG 75
Query 61 CTCAGGAGAACAAGTAAAGGAGATTCGCGTTTGTACGAATCGCACCTGCCGGAGACAAGG 120
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 76 CTCAGGTGAACAAGTGAAGGAGATTCGCGTTTGTACGAATCGCACCTGCCGAAGACAAGG 135
Query 121 CTCCTTCCAGATTCTCGAGACATTAACAGCTCTCGCACCTCCCGAACTCCGAGTCACTCC 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 136 CTCCTTCCAGATTCTCGAGACTTTAACAGCTCTCGCACCTCCCGAACTCCGAGTCACTCA 195
Query 181 CTGCGCTTGCCTCGGCCGATGCGGCTCTGGTCCAAACCTCGTGGCTCTCCCTCAAGGTCT 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 196 CTGCGCTTGCCTCGGCCGATGCGGCTCCGGTCCAAACCTCGTGGCTCTCCCTCAAGGTCT 255
Query 241 CATCCTCCGTCACTGCGCCACGCCTTCTCGAGCTGCTGAAATTTTGTTCAGCCTCTGTGG 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 256 CATCCTACGTCACTGCGCCACGCCTTCTCGAGCTGCTGAAATTTTGTTCAGCCTATGTGG 315
Query 301 TGACGGTCGTGAAGCTTCTTCATCCTCCGCCGTCACAGACGCTCTCACCGCTTTAGCGTT 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 316 TGACGGTCGTGAAGCTTCTTCATCCTCCGCCGTCACAGACGCTCTCACGGCTTTAGCGTT 375
Query 361 AACCAACAATGCTCTCTATCAAATCGATGCGGGAAATTTCTCTGAAGCCGAAGCACTTCT 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AACCAACAATGCTCTCTCTCAAATCGATGCGGGAAATTTCTCTGAAGCCGAAGCACTTCT 435
Query 421 CACTCAGGCATTAGAGCTGAAACCATACGGTGGCTTGCATAGAATCTTCAAACACAGATC 480
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 436 CACTCAGGCTTTAGAGCTGAAACCCTACGGTGGCTTGCATAGAATATTCAAACACAGATC 495
Query 481 AGTAGCAAAACTGGGAATGCTTGATTATTCTGGGGCTCTTGAAGATATAAGCCGTGCTCT 540
|||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 496 AGTAGCAAAATTGGGAATGCTTGATTACTCTGGGGCTCTTGAAGATATAAGCCAAGCTCT 555
Query 541 AGCATTAGCTCCTAACTATTATGAGCCATACATATGCCAAGGGGATGTCTACGTAGCAAA 600
||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 556 AGCTTTAGCTCCTAACTATTCTGAGCCCTACATATGCCAAGGGGATGTCTACGTAGCAAA 615
Query 601 GGGTCAATACGATCTTGCAGAGAAGTCATACGTGAAATGTCTAGAGATAGATCCTTCTCT 660
|||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 616 AGGTCAATATGATCTTGCAGAGAAGTCATACTTGACATGTCTAGAGATAGATCCTTCTCT 675
Query 661 TCGCAGATCGAAACCATTCAAGGCCCGGATTGCGAACCTTCAACAGAAAGTTGTTGAAGT 720
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 676 TCGCAGATCGAAACCATTCAAGGCCCGGATTGCGAAACTTCAACAGAAAGTTGTTGAACT 735
Query 721 AGATGTGACATA 732
|||| ||| |||
Sbjct 736 AGATTTGA-ATA 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40538956629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5