BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479252
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17680.2 | Symbols: | Kinase interacting (KIP1-like) family... 1646 0.0
> AT3G17680.2 | Symbols: | Kinase interacting (KIP1-like) family
protein | chr3:6042947-6044504 REVERSE LENGTH=1318
Length=1318
Score = 1646 bits (891), Expect = 0.0
Identities = 1021/1084 (94%), Gaps = 7/1084 (1%)
Strand=Plus/Plus
Query 119 GACCTTGAAGCTCGGATGCAAATCCTGCGCGAGTCTGGTTTTGAAGAAAGCCAAGGAGAT 178
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 234 GACCTTGAAGCTCGGATGCAAATCCTGCGTGAGTCTGGTTTTCAAGAAAGCCAAGGAGAT 293
Query 179 GATGATACATTTGGTCAACGAGCTGAATGGTTTTACCAGAGACGACCTCTGCTTCTC-AA 237
|||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 294 GATGATACCTTTGCTCAACGAGCTGAATGGTTTTACCAGGGACGACCTTTGCTTCTCTCA 353
Query 238 GCTTTGTCTTGACCTGTACAACGGCTACATCACTCTCTTGGGTCGTTCTTCTCATCAGAC 297
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 354 -CTTTGTCTGGACCTGTACAACGGCTACGTCACTCTCTTGGGTCGTTCTTCTCATCAGAC 412
Query 298 CAGACTTAAACCCA-TAACTTCTCTTCCCAACCAGCTTCTCCAAGATGATGATGACTGCA 356
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 413 CAGACTTAAACCCACT-ACTTCTCTTCCGAACCAGCTTCTCCAAGATGATGATGACTGCA 471
Query 357 TTTCAGACCTTGATTCCGTTAGTGAGATCAGTTCCGAAGTCGAGAGCACCTTGTCCTTTC 416
|||| ||| ||||||||||||||||| ||||||| ||||| ||||||||||| |||||||
Sbjct 472 TTTCGGACATTGATTCCGTTAGTGAGGTCAGTTCTGAAGTTGAGAGCACCTTATCCTTTC 531
Query 417 AACAGATGCAAGATTCTGCTGCGGTTTCAGAGAAAGTTGAGGAGCTGGTATCCCAACTTG 476
|||||||| ||||| || |||||||||| |||||||| || ||||| |||||||||||||
Sbjct 532 AACAGATGAAAGATCCTACTGCGGTTTCTGAGAAAGTCGATGAGCTTGTATCCCAACTTG 591
Query 477 TGACAGCAAGCTTGGACAAAGAGATTCTGAAACACGAGTTACTTCACAAGGAGCAACAGT 536
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 592 TGACAGCAAGCTTGGACAAAGAGATTCTGAAACACGAGTTACTTCACAAGGACCAACAGT 651
Query 537 TTCATGAAGCCTCCAAGACTATAGAGCTGTTGAAGAAGTTTGTCATGTTGCTGGAGATGG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TTCATGAAGCCTCCAAGACTATAGAGCTGTTGAAGAAGTTTGTCATGTTGCTGGAGATGG 711
Query 597 AGAAAGAAGTGGCTGTGGAGGAAAACGCTAATCTTGGCTACAAACTCACTTCTCTCTTGG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AGAAAGAAGTGGCTGTGGAGGAAAACGCTAATCTTGGCTACAAACTCACTTCTCTCTTGG 771
Query 657 AGGAGAACAGAGAGCTAGCGACTGAGGCGTTGTTCATGAAGAACGAAGCTGTTGGGCTTG 716
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 772 AGGAGAACAGAGAGCTAGCCACTGAGGCATTGTTCATGAAGAACGAAGCTGTTGGGCTTG 831
Query 717 CTAGGTGCGTGCTTAAGATGAGAGATGACCACTTTCACAAAGTCTGCATTCTCCAGAACC 776
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 832 CTAGGTGTGTGCTTAAGATGAGAGATGACCACTTTCACAAGGTCTGCATTCTCCAGAACC 891
Query 777 GCATCTACTCGCTTCAGGCATCCAGGAACTCAGAGCCTGTCTCTGATAAGGTCTCATCCG 836
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 892 GCATCTACTCGCTTCAGGCATCTAGGAACTCAGAGCCCGTCTCTGATAAGGTCTCATACG 951
Query 837 GATGCTTTGGCCTGGATAAACATAAGACCAAAAAGAAGAAGGAGAACAAAACCGAAGAGA 896
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GATGCTTTGGCCTGGATAAGCATAAGACCAAAAAGAAGAAGGAGAACAAAACCGAAGAGA 1011
Query 897 AGA--C-TGGATTCAAGTGGTTGAAGAAGCTGAACAACATTAACCTGTTTACAAAGCGCA 953
||| | ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||
Sbjct 1012 AGAAGCCTGGATTCAAGTGGTTGAAGAAACTGAACACCATTAACCTGTTTACAAAGTGCA 1071
Query 954 ACCTTAACCCATCAGCTGCTGCTCCATCATGCTGCACTTTCGACATGCCTAATTAGCTTA 1013
|||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1072 GCCTTAACCCATCGGCTGCTGCTCCATCATGCTGCACTTTCGACTTGCCTTATTAGCTTA 1131
Query 1014 ATCCTTTGGTGTATTAGTAAACTAAGAACAATGCATACATGACTATGTATGTTCTATCGC 1073
|||||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 1132 ATCCTTTGCTGTATTAGTAAACTATGAACAATGCATACATAACTGTGTATGTTCTATCGC 1191
Query 1074 CTTATTAGGTTTCATGCTTTTCAGTGCATCGCCCTGATGCACAGTTTGTTGTATACTGCA 1133
|||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1192 CTTATTAGGTTTAATGCTTTTCAGTGCATCGCCCTGATGCACAGTTTGTTGTACCCCGCA 1251
Query 1134 AACAATCTGTGACTCCTCGATTTACAGATGTATGGTTTTCATGACTTACTTATCTAGTAA 1193
|||||||||| ||||| ||| ||| ||||||||||||||||||| |||||||| || |
Sbjct 1252 TACAATCTGTGGCTCCTTGATCCACATATGTATGGTTTTCATGACTCACTTATCTGGTTA 1311
Query 1194 ACAC 1197
||||
Sbjct 1312 ACAC 1315
Score = 113 bits (61), Expect = 3e-24
Identities = 79/86 (92%), Gaps = 7/86 (8%)
Strand=Plus/Plus
Query 1 TGAACAAACGTGTCAGCTATCTTCTCTCCCTCTCTTTCACTATTTCTGGGTTGAAGAA-A 59
||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||| |
Sbjct 1 TGAACAAACGTGTCAGCTATC-T-TCT--CTCTC--TCACTATTTCTGGGTTGAAGAAGA 54
Query 60 TGAAGAACAAAGCATCCATGGAAGCT 85
||||||||||||||||||||||||||
Sbjct 55 TGAAGAACAAAGCATCCATGGAAGCT 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5