BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479261
Length=526
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17780.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 771 0.0
> AT3G17780.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: intracellular protein transport; LOCATED
IN: endomembrane system, integral to membrane, endoplasmic
reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated
31-like (InterPro:IPR008417); BEST Arabidopsis
thaliana protein match is: B-cell receptor-associated 31-like
(TAIR:AT1G48440.1); Has 102 Blast hits to 102 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr3:6086913-6088371 FORWARD LENGTH=736
Length=736
Score = 771 bits (417), Expect = 0.0
Identities = 465/488 (95%), Gaps = 3/488 (1%)
Strand=Plus/Plus
Query 1 GGGGAACAATGGCATTGCAATGGCTTATTCTGTCGTATGTGGTCGCCGCCGAGGTCGCGA 60
|||||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 96 GGGGAATAATGGCATTGCAATGGCTGATTCTGTCGTATGTGGTTGCCGCCGAGGTAGCGA 155
Query 61 TCGCCGTCATCTTGACTCTCCCTTACCCAATGCTCCTGAAGAAACGCATTGTATCACTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 156 TCGCCGTCATCTTGACTCTCCCTTACCCAATGCTCCTGAAGAAACGCATCGTATCACTTA 215
Query 121 TCTCGCTCATACTCAATCCTGCCGCTTCCATCGTCGCCTTCGCTGGATTTCAACTCCTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TCTCGCTCATACTCAATCCTGCCGCTTCCATCGTCGCCTTCGCTGGATTTCAACTCCTCG 275
Query 181 ATATTTACTGGAAGAATGAGCATAGGCTACTGTGCTCATCTGAAGTTTGCACTACTACAG 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 276 ATATTTACTGGAAGAATGAGCATAGGCTATTGTGCTCATCTGAAGTTTGCACTACTACAG 335
Query 241 AGCGGGATCGTTACGAGAAATCCATCTATAAGGCTCAGAGGAATGGGGTTCTGTGTGCGG 300
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 336 AGCGGGATCGTCACGAGAAATCCGTCTATAAGGCTCAGAGGAATGGGGTTCTGTGTGCGG 395
Query 301 CTGGGATCCTGCTCTACTGGTGCATCTTCCGCATCTGCAAGTACCACAAAGACCTTGAGC 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CTGGGATCCTTCTCTACTGGTGCATCTTCCGCATCTGCAAGTACCACAAAGACCTTGAGC 455
Query 361 GTTTGGAGGAATTAGAGAAGAGATACAAAGACGAGTAGAAGTCTTCCCAAGTCTGAGAGT 420
|||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 456 GTTTGGAGCAATTAGAGAAGAGATACAAGGACGAGTAGAAATCTTCCCAA--CTGAGAGT 513
Query 421 CTTGTTCTTCTCTTATAGTATCACCTCGGCTTGTGACTAGTCCCAAAAACTGAATGAGAC 480
|| || || || |||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 514 CTGGTACTACTGTTATAGTATCAC-TCGGCGTGTGAGTAGTCCCAAAAACTGAATGAGAG 572
Query 481 CATGATTT 488
||||||||
Sbjct 573 CATGATTT 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25167307647
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5