BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479265
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17810.1 | Symbols: PYD1 | pyrimidine 1 | chr3:6094098-60965... 2477 0.0
> AT3G17810.1 | Symbols: PYD1 | pyrimidine 1 | chr3:6094098-6096566
FORWARD LENGTH=1739
Length=1739
Score = 2477 bits (1341), Expect = 0.0
Identities = 1596/1715 (93%), Gaps = 33/1715 (2%)
Strand=Plus/Plus
Query 1 TTAAGTTGTTTACTTTGTTCTTCGATTTGATCACCAACTCTCACATATCTCGATATCCAA 60
||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 22 TTAAGTTCTTTCCTTTGTTCTTCGATTTGATCACCAACTCTCACATATTTCGAAATCGTC 81
Query 61 ACACTTTGTTGCGTGTTATCTTCTCCctctc-t-ctctctT-A---T-A-ATC-CTTGAG 111
|||||||||||||||| ||||||| ||||| | | |||| | | | || | ||
Sbjct 82 ACACTTTGTTGCGTGTCGTCTTCTCTCTCTCATAAT-TCTTGAGTTTCACGTCTCAAGAT 140
Query 112 TT--TCACGTCT--CAA---GCCAGATTGATCTCTGTAATCATGGCTTCCATGAGTTTCG 164
|| |||| ||| ||| |||||||||||||| |||| |||||||||||||||||||
Sbjct 141 TTGATCACTTCTGCCAATTTTCCAGATTGATCTCTCTAATTATGGCTTCCATGAGTTTCG 200
Query 165 CCTTGAATCGCTTCTCTGGACTCTCCTCTAAAACCACCTTATCAGCTGACTTCGATCCAT 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 CCTTGAATCGCTTCTCTGGACTCTCCTCTAAAACCACCTTATCAGCTGACTTCGATCCAT 260
Query 225 CAACTCGCCGGAGTTTTCTACCGCCGACTAGAGTTGGACTTAAGATCTCTTCCGCCGCCG 284
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CCTCTCGCCGGAGTTTTCTACCGCCGACTAGAGTTGGACTTAAGATCTCTTCCGCCGCCG 320
Query 285 AATCGGAGCCTGATCTCAGTGTCACTGTAAATGGCCTGAAAATGCCTAATCCTTTCGTGA 344
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 321 AATCGGAGCCTGATCTCAGTGTCACTGTAAATGGCCTGAAAATGCCCAATCCTTTCGTGA 380
Query 345 TCGGGTCGGGTCCACCGGGTACCAACTACACCGTCATGAAGAGAGCCTTTGACGAAGGTT 404
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 381 TCGGGTCGGGTCCACCGGGTACCAACTACACCGTCATGAAGAGAGCCTTTGATGAAGGTT 440
Query 405 GGGGAGCCGTCATCGCCAAAACCGTATCATTAGATGCAGCCAAAGTTATCAACGTGACAC 464
|||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 441 GGGGGGCCGTCATCGCCAAAACCGTATCTTTAGATGCATCCAAAGTTATCAACGTGACAC 500
Query 465 CTCGATATGCTCGGCTACGAACTGGTTCCAGTGGCTCAGCCAAAACAGATGTAATTGGGT 524
|| ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 501 CTAGATATGCTCGGCTACGAACCGGATCCAATGGCTCAGCCAAAACAGATGTAATTGGGT 560
Query 525 GGCAGAACATAGAACTCATCAGTGACCGACCTCTTGAAACCATGCTCAGAGAGTTTGAGC 584
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 561 GGCAGAACATAGAACTCATCAGTGACAGACCTCTTGAAACCATGCTCAAAGAGTTTGAGC 620
Query 585 GATTGAAAAAAGAGTATCCTGATCGGATTTTGATTGCTTCCA-TCATGGAGGAATACAAC 643
| ||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |||
Sbjct 621 GGTTGAAAAAAGAGTATCCTGATCGGATTCTGATTGCTTC-AGTCATGGAGGAATATAAC 679
Query 644 AAAACTGCTTGGGAAGAGCTTATCGACCGTGTTGAGCAAACTGGTGTTGATGCTTTAGAA 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 AAAACTGCTTGGGAAGAGCTTATCGACCGTGTTGAGCAAACTGGTGTTGATGCTTTAGAA 739
Query 704 ATCAACTTCTCGTGTCCTCACGGTATGCCAGAGCGCAGAATGGGTGCCGCTGTTGGACAA 763
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 740 ATCAACTTCTCGTGTCCTCATGGTATGCCAGAGCGCAGAATGGGTGCCGCTGTTGGACAA 799
Query 764 GATTGTGCGCTTCTCGACGAGGTTTGCGGATGGATTAATGCTAAAGCTACAGTTCCTGTT 823
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GATTGTGCGCTTCTCGACGAGGTTTGCGGATGGATTAATGCTAAAGCTACAGTTCCTGTA 859
Query 824 TGGGCTAAGATGACTCCTAATATCACTGACATAACAGAGCCTGCAAGGGTATCTCTAAAA 883
||||||||||||||||||||||| ||||||||||| |||||||| ||||| || ||||||
Sbjct 860 TGGGCTAAGATGACTCCTAATATTACTGACATAACTGAGCCTGCTAGGGTGTCACTAAAA 919
Query 884 TCAGGATGTGAAGGAATTTCAGCTATCAATACAATCATGAGTGTTATGGGAATTGATATG 943
|| ||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 920 TCCGGATGTGAAGGAATTGCAGCGATCAATACAATCATGAGTGTAATGGGAATTGATATG 979
Query 944 AAGACGCTGCGTCCTGAGCCATGCGTTGAAGGTTATTCAACTCCAGGAGGCTACTCTTAT 1003
|||||| |||||||||||||||||||||||||||| || |||||||| || |||||||||
Sbjct 980 AAGACGTTGCGTCCTGAGCCATGCGTTGAAGGTTACTCCACTCCAGGGGGATACTCTTAT 1039
Query 1004 AAGGCCGTTCGCCCCATTGCGCTTGCGAAAGTTATGAACATTGCCAAAATGATGAAATCT 1063
|||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1040 AAGGCCGTTCGCCCAATTGCACTGGCAAAAGTTATGAACATTGCCAAAATGATGAAATCT 1099
Query 1064 GAGTTCAGTGAAAATCACTCGCTTTCGGGTATCGGAGGTGTTGAAACTGGCTATGATGCC 1123
||||| ||||| ||| ||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1100 GAGTTTAGTGAGGATCGCTCGCTTTCGGGTATTGGAGGAGTTGAAACTGGCTATGATGCC 1159
Query 1124 GCTGAGTTCATTCTCCTTGGATCAAATACTGTACAGGTATGCACCGGTGTGATGATGCAC 1183
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 GCTGAATTCATTCTCCTTGGATCAAATACTGTACAGGTATGCACCGGTGTGATGATGCAC 1219
Query 1184 GGCTATGGTCATGTGAAAACCCTTTGCGCCGAGCTTCAAGATTTCATGAAACAACACAAC 1243
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1220 GGCTATGGTCATGTGAAAACCCTTTGCGCTGAGCTGAAAGATTTCATGAAACAACACAAC 1279
Query 1244 TTCTCGACGATAGAAGAGTTCAGAGGGCATTCGCTGCAGTACTTTACGACACACACAGAT 1303
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1280 TTCTCTACAATAGAAGAGTTCAGAGGGCATTCGCTGCAGTACTTTACAACACACACAGAT 1339
Query 1304 TTAGTTAAGAGACAGAAAGAAGCAGTTGAGCAGCGAAAAGCTGAGAAGAGAGGCTTGAAA 1363
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1340 TTAGTTAAGAGACAGAAAGAAGCAGTTGAGCAGAGAAAAGCTGAGAAGAGAGGCTTGAAA 1399
Query 1364 TCTGACAAAGATTGGACCGGAGATGGGTTCGTGAAGGAGACTGAAAGTATGGTTTCTAAC 1423
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1400 TCTGATAAAGATTGGACCGGGGATGGGTTCGTGAAGGAGACTGAGAGTATGGTTTCTAAC 1459
Query 1424 TAAGTTAGTAGCCTGTTGAAGTAGTGATGACCACCCAAATATTT-AATAAAGGTTCTGCA 1482
||||||||||||||| |||||| | |||||||||||||||||| ||||||||||| |||
Sbjct 1460 TAAGTTAGTAGCCTGATGAAGT--T-ATGACCACCCAAATATTTCAATAAAGGTTCAGCA 1516
Query 1483 GCTTCATTCACAA-TCAAAT-CAC-T-A--A-GGCTCTTTCTTTCAAATGTTTCAAATCG 1535
|||||||||||| ||| || || | | | ||||||||||||||||||||| |||||
Sbjct 1517 ACTTCATTCACAACTCACATGCAAATTACGAAGGCTCTTTCTTTCAAATGTTTAAAATCA 1576
Query 1536 ACTTCGTTAA-TCTCACTTGAAAGGAAATAACTAAATTT-ATGTATCTTAATTTTCTTCT 1593
||||| |||| |||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 1577 ACTTC-TTAAATCTCACTTGAAAAGAAATAACTAAATTTTATGTTTCTTAATTTTCTTCT 1635
Query 1594 CCTTGTGTACTATTCATCTTGTATCCATCCATAGCAACCATTTCTTTGTTCCTTCAAGTT 1653
| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1636 CGTTGTGTATTATTCATCTTGTATCCATCCATAGCAACCATTTCTTTGTTACTTCAAGTT 1695
Query 1654 GGCTTAATTTTTGGCCAATAATAATATCATAGACC 1688
||||||| |||||||||||||||||| ||||||||
Sbjct 1696 GGCTTAAATTTTGGCCAATAATAATACCATAGACC 1730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83433305790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5