BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479266
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17820.1 | Symbols: ATGSKB6, GLN1.3, GLN1;3 | glutamine synt... 1864 0.0
AT1G48470.1 | Symbols: GLN1;5 | glutamine synthetase 1;5 | chr1... 907 0.0
AT5G37600.1 | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutam... 798 0.0
AT5G16570.1 | Symbols: GLN1;4 | glutamine synthetase 1;4 | chr5... 664 0.0
> AT3G17820.1 | Symbols: ATGSKB6, GLN1.3, GLN1;3 | glutamine synthetase
1.3 | chr3:6097414-6099595 FORWARD LENGTH=1341
Length=1341
Score = 1864 bits (1009), Expect = 0.0
Identities = 1137/1199 (95%), Gaps = 8/1199 (1%)
Strand=Plus/Plus
Query 1 CTCTATAAACACACACTCTCAGGAGAGAAGTTGTATTGATCG-----TC-TTCCCT-AA- 52
|||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 1 CTCTATAAACACACACTCTCAGGAGAGAAGTTGTATTGATCGTCTTCTCTTTCCCTAAAC 60
Query 53 ACACTGATTATTTTCTCTCCGACGCCGCCATGTCTCTGCTATCAGATCTCGTTAACCTCA 112
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 ACACTGATTATTTTCTCTCCGACGCCGCCATGTCTCTGCTCTCAGATCTCGTTAACCTCA 120
Query 113 ACCTCTCCGACGCCACCGAAAAAATCATCGCCGAATACATATGGATCGGTGGATCTGGAA 172
||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCTCACCGATGCCACCGGGAAAATCATCGCCGAATACATATGGATCGGTGGATCTGGAA 180
Query 173 TGGACATCAGAAGCAAAGCCAGGACACTACCAGGACCAGTCACTGATCCATCAAAGCTTC 232
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 TGGATATCAGAAGCAAAGCCAGGACACTACCAGGACCAGTGACTGATCCATCAAAGCTTC 240
Query 233 CCAAATGGAACTACGACGGATCCAGCACCGGTCAGGCTGCCGGAGAAGACAGTGAAGTCA 292
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 CCAAGTGGAACTACGACGGATCCAGCACCGGTCAGGCTGCTGGAGAAGACAGTGAAGTCA 300
Query 293 TTCTATACCCTCAGGCGATATTCAAGGATCCATTCAGGAAAGGCAACAACATCCTGGTGA 352
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TTCTATACCCTCAGGCAATATTCAAGGATCCCTTCAGGAAAGGCAACAACATCCTGGTGA 360
Query 353 TGTGTGATGCTTACACACCAGCTGGTGATCCAATTCCAACCAACAAGAGGCACAACGCTG 412
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 TGTGTGATGCTTACACACCAGCTGGTGATCCTATTCCAACCAACAAGAGGCACAACGCTG 420
Query 413 CTAAGATCTTCAGCCACCCCAACGTTGCCTCTGAGGAGCCTTGGTATGGAATTGAGCAAG 472
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 421 CTAAGATCTTCAGCCACCCCGACGTTGCCAAGGAGGAGCCTTGGTATGGGATTGAGCAAG 480
Query 473 AATACACTTTGATGCAAAAGGACGTGAACTGGCCAATTGGTTGGCCTGTTGGTGGTTTCC 532
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 481 AATACACTTTGATGCAAAAGGATGTGAACTGGCCAATTGGTTGGCCTGTTGGTGGCTACC 540
Query 533 CTGGCCCTCAGGGACCTTACTACTGTGGTGTGGGAGCTGACAAAGCCATTGGTCGTGACA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGGCCCTCAGGGACCTTACTACTGTGGTGTGGGAGCTGACAAAGCCATTGGTCGTGACA 600
Query 593 TTGTGGATGCACACTACAAAGCCTGTATTTACGCCGGTATTGGCATTTCTGGTGTCAATG 652
|||||||||| |||||||| |||||| |||||||||||||||| ||||||||| ||||||
Sbjct 601 TTGTGGATGCTCACTACAAGGCCTGTCTTTACGCCGGTATTGGTATTTCTGGTATCAATG 660
Query 653 GAGAAGTCATGCCTGGCCAGTGGGAGTTCCAAGTCGGCCCTGTTGAGGGTATTGGTGCTG 712
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 661 GAGAAGTCATGCCAGGCCAGTGGGAGTTCCAAGTCGGCCCTGTTGAGGGTATTAGTTCTG 720
Query 713 GTGATCAAGTCTGGGTTGCTCGATACCTTCTCGAGAGGATCACTGAGATCTCTGGTGTAA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTGATCAAGTCTGGGTTGCTCGATACCTTCTCGAGAGGATCACTGAGATCTCTGGTGTAA 780
Query 773 ATGTCAGCTTCGACCCAAAACCAGTCCCGGGTGATTGGAACGGAGCTGGAGCTCACTGCA 832
||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 781 TTGTCAGCTTCGACCCGAAACCAGTCCCGGGTGACTGGAATGGAGCTGGAGCTCACTGCA 840
Query 833 ACTACAGTACTAAGACAATGAGGAACGATGGAGGATTAGAAGTGATCAAGAAAGCGATAG 892
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 ACTACAGCACTAAGACAATGAGAAACGATGGAGGATTAGAAGTGATCAAGAAAGCGATAG 900
Query 893 GGAAGCTTCAGCTGAAACACAAAGAACACATTGCTGCTTACGGTGAAGGCAACGAGCGTC 952
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 901 GGAAGCTTCAGCTGAAACACAAAGAACACATTGCTGCTTACGGTGAAGGAAACGAGCGTC 960
Query 953 GTCTCACTGGAAAGCACGAAACCGCAGACATCAACACTTTCTCTTGGGGAGTCGCAAACC 1012
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 961 GTCTCACTGGAAAGCACGAAACCGCAGACATCAACACATTCTCTTGGGGAGTCGCGAACC 1020
Query 1013 GTGGAGCATCCGTTAGAATTGGACGTGACACTGAGAAAGAAGGTAAAGGTTACTTCGAGG 1072
||||||| || || ||| | ||||||||||| ||||| ||||||||||| |||||||| |
Sbjct 1021 GTGGAGCGTCAGTGAGAGTGGGACGTGACACAGAGAAGGAAGGTAAAGGGTACTTCGAAG 1080
Query 1073 ACCGAAGGCCAGCTTCTAACATGGATCCTTATGTTGTCACTTCCATGATCGCTGAAACCA 1132
|| |||||||||||||||||||||||||||| |||||||| |||||||||||||| || |
Sbjct 1081 ACAGAAGGCCAGCTTCTAACATGGATCCTTACGTTGTCACCTCCATGATCGCTGAGACGA 1140
Query 1133 CCATCCTCGGTTGATGACACGTTTCATGATTTGATTTCTCTCCCATTTGGttttttttt 1191
|||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1141 CCATACTCGGTTGATGACACATTTCATGATTTGATTTCTCTCCAATTTGGTTTTTTTTT 1199
> AT1G48470.1 | Symbols: GLN1;5 | glutamine synthetase 1;5 | chr1:17913711-17916098
FORWARD LENGTH=1307
Length=1307
Score = 907 bits (491), Expect = 0.0
Identities = 882/1070 (82%), Gaps = 29/1070 (3%)
Strand=Plus/Plus
Query 84 GTCT-CTGCTATCAGATCTCGTTAACCTCAACCTCTCCGACGCCACCGAA-AAAATCATC 141
|||| || || ||||||||| | ||||| | || | | | | |||| || |||||||||
Sbjct 79 GTCTCCT-CTCTCAGATCTCCTAAACCTTGATCTAT-C-A-GACACC-AAGAAAATCATC 133
Query 142 GCCGAATACATATGGATCGGTGGATCTGGAATGGACATCAGAAGCAAAGCCAGGACACTA 201
|| |||||||||||||||||||| ||||||||||| || |||||||||||||||||| ||
Sbjct 134 GCTGAATACATATGGATCGGTGGCTCTGGAATGGATATTAGAAGCAAAGCCAGGACATTA 193
Query 202 CCAGGACCAGTCACTGATCCATCAAAGCTTCCCAAATGGAACTACGACGGATCCAGCACC 261
||||||||||| | | ||||| |||||||||| |||||||||||||| ||||| ||||||
Sbjct 194 CCAGGACCAGTAAGTAATCCAACAAAGCTTCCAAAATGGAACTACGATGGATCTAGCACC 253
Query 262 GGTCAGGCTGCCGGAGAAGACAGTGAAGTCATTCTATACCCTCAGGCGATATTCAAGGAT 321
| ||| ||||||||||| || |||||||||||||| || |||||||| ||||| |||||
Sbjct 254 GATCAAGCTGCCGGAGATGATAGTGAAGTCATTCTTTATCCTCAGGCAATATTTAAGGAC 313
Query 322 CCATTCAGGAAAGGCAACAACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGAT 381
||||||||||| || |||||||| |||||||||||||||||||||| ||| || || |||
Sbjct 314 CCATTCAGGAAGGGGAACAACATTCTGGTGATGTGTGATGCTTACAGACCGGCCGGAGAT 373
Query 382 CCAATTCCAACCAACAAGAGGCACAACGCTGCT-AAGATCTTCAG-CCACCCCAACGTTG 439
|||||||| |||||||| |||||||| || | | || |||||| | || ||||| | ||
Sbjct 374 CCAATTCCGACCAACAATAGGCACAAGGCCG-TAAAAATCTTC-GATCATCCCAATG-TG 430
Query 440 -CCTCTGAGGAGCCTTGGTATGGAATTGAGCAAGAATACACTTTGA-TGCAAAAGGACGT 497
|||| |||||||||| ||| || |||||||||||||| || | | |||| || ||
Sbjct 431 AAGGCTGAAGAGCCTTGGTTTGGGATAGAGCAAGAATACACATT-ACTTAAAAAAGATGT 489
Query 498 GAACTGGCCAATTGGTTGGCCTGTTGGTGG-TTTCCCTGGCCCTCAGGGACCTTACTACT 556
||| |||||| | ||||||||| ||||||| ||| ||||| ||||||||||| ||||| |
Sbjct 490 GAAGTGGCCACTAGGTTGGCCTCTTGGTGGCTTT-CCTGGTCCTCAGGGACCGTACTATT 548
Query 557 GTGGTGTGGGAGCTGACAAAGCCATTGGTCGTGACATTGTGGATGCACACTACAAAGCCT 616
||| || || || |||||||| |||||||||||||||| ||||| ||||| ||||| |
Sbjct 549 GTGCAGTAGGTGCAGACAAAGCTTTTGGTCGTGACATTGTCGATGCTCACTATAAAGCTT 608
Query 617 GTATTTACGCCGGTATTG-GCATTTCTGGTGTCAATGGAGAAGTCATGCCTGGCCAGTGG 675
|| | ||| ||||| ||| | ||| ||||| |||||| |||||||||||||| || |||
Sbjct 609 GTCTATACTCCGGT-TTGAGTATTGGTGGTGCCAATGGTGAAGTCATGCCTGGACAATGG 667
Query 676 GAGTTCCAAGTCGGCCCTGTTGAGGGTATTGGTGCTGGTGATCAAGTCTGGGTTGCTCGA 735
||||| ||| || | ||| || ||||||||||| ||||||||| | |||||||||||
Sbjct 668 GAGTTTCAAATCAGTCCTACTGTTGGTATTGGTGCAGGTGATCAATTATGGGTTGCTCGT 727
Query 736 TACCTTCTCGAGAGGATCACTGAGATCT-CTGGTGTAAATGTCAGC-TTCGACCCAAAAC 793
||| |||| |||||||| |||||||| | | ||||| | |||| | ||||| |||||||
Sbjct 728 TACATTCTTGAGAGGATTACTGAGATATGC-GGTGTGATTGTC-TCATTCGATCCAAAAC 785
Query 794 CAGTCCCGGGTGATTGGAACGGAGCTGGAGCTCACTGC-AACTACAGTACTAAGA-CAAT 851
|| ||| |||||||||||| ||||| | ||||| | | |||| |||||| || | | ||
Sbjct 786 CAATCCAGGGTGATTGGAATGGAGCAGCCGCTCA-TACGAACTTCAGTAC-AAAATCGAT 843
Query 852 GAGGAACGATGGAGGATTAGAAGTGATCAAGAAAGCGATAGGGAAGCTT-CAGCTGAAAC 910
|||||| ||||||||| | || |||| ||| |||| ||| ||||||| || ||||||
Sbjct 844 GAGGAAAGATGGAGGACTGGATTTGATTAAGGAAGCAATAAAGAAGCTTGAAG-TGAAAC 902
Query 911 ACAAAGAACACATTGCTGCTTACGGTGAAGGCAACGAGCGTCGTCTCACTGGAAAGCACG 970
||||| |||||||||||||||| ||||||||||||||| | ||||||||||| ||||| |
Sbjct 903 ACAAACAACACATTGCTGCTTATGGTGAAGGCAACGAGAGGCGTCTCACTGGGAAGCATG 962
Query 971 AAACCGCAGACATCAACACTTTCTCTTGGGGAGTCGCAAACCGTGGAGCATCCGTTAGAA 1030
|||| ||||||||||||||||||||||||||||| || | ||||||||||| || |||
Sbjct 963 AAACTGCAGACATCAACACTTTCTCTTGGGGAGTGGCGGATCGTGGAGCATCGGTGAGAG 1022
Query 1031 TTGGACGTGACACTGAGAAAGAAGGTAAAGGTTACTTCGAGGACCGAAGGCCAGCTTCTA 1090
| ||| | || || ||||||||||||||||| || || || || |||||||| | ||||
Sbjct 1023 TAGGAAGAGATACGGAGAAAGAAGGTAAAGGGTATTTTGAAGATCGAAGGCCTTCGTCTA 1082
Query 1091 ACATGGATCCTTATGTTGTCACTTCCATGATCGCTGAAACCACCATCCTC 1140
| ||||||||||| | || || |||||||| ||||||||||||||||||
Sbjct 1083 ATATGGATCCTTACCTAGTTACCTCCATGATTGCTGAAACCACCATCCTC 1132
> AT5G37600.1 | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine
synthase clone R1 | chr5:14933336-14935841 REVERSE LENGTH=1494
Length=1494
Score = 798 bits (432), Expect = 0.0
Identities = 862/1067 (81%), Gaps = 40/1067 (4%)
Strand=Plus/Plus
Query 94 TCAGATCTCGTTAACCTCAACCTCTCCGACGCCACCGAAAAAATCATCGCCGAATACATA 153
||||||||| | ||||| |||||||| ||| |||| || |||||||| || |||||||||
Sbjct 198 TCAGATCTCATCAACCTTAACCTCTCAGACTCCACTGACAAAATCATTGCTGAATACATA 257
Query 154 TGGATCGGTGGATCTGGAATGGACATCAGAAGCAAAGCCAGGACACTACCAGGACCAGTC 213
||| | ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 258 TGGGTTGGTGGTTCTGGAATGGACATGAGAAGCAAAGCCAGGACTCTACCTGGACCAGTG 317
Query 214 ACTGATCCATCAAAGCTTCCCAAA-TGGAACTACGACGGATCCAGCACCGGTCAGGCTGC 272
||||| || || ||| | ||||| |||||||| || || || ||||| || || ||| |
Sbjct 318 ACTGACCCTTCGCAGC-TACCAAAGTGGAACTATGATGGTTCAAGCACAGGCCAAGCT-C 375
Query 273 C-GGAGAAGACAGTGAAGTCATTC-TATACCCTCAGGCGATATTCAAGGATCCATTCAGG 330
| || |||||||||||||||| || |||||||||| || |||||||||||||| ||| |
Sbjct 376 CTGGTGAAGACAGTGAAGTCA-TCTTATACCCTCAAGCCATATTCAAGGATCCTTTCCGT 434
Query 331 AAAGGCAACAACATCCTGGTGATGTGTGATGCTTACACACCAGCTGGTGATCCAATTCCA 390
| ||| |||||||| || || ||||| ||||| ||||| || || ||||| ||||| ||
Sbjct 435 AGAGGAAACAACATTCTTGTCATGTGCGATGCGTACACTCCCGCGGGTGAACCAATCCCG 494
Query 391 ACCAACAAGAGGCACAAC-GCTGCTAAGATCTTCAGCCACCCCAACGTTGCCTCTGAGGA 449
|| ||||| || ||| | || |||||| |||| ||| |||| | ||||| |||| |
Sbjct 495 ACTAACAAAAGACAC-GCTGCGGCTAAGGTCTTTAGCAACCCTGATGTTGCAGCTGAAGT 553
Query 450 GCCTTGGTATGGAATTGAGCAAGAATACACTTTGA-TGCA-AAAGGACGTGAACTGGCCA 507
||| |||||||| |||||||||||||||||||| | | || ||| || ||||| |||||
Sbjct 554 GCCATGGTATGGTATTGAGCAAGAATACACTTT-ACTCCAGAAA-GATGTGAAGTGGCCT 611
Query 508 ATTGGTTGGCCTGTTGGTGGTT-TCCCTGGCCCTCAGGGACCTTACTACTGTGGTGTGGG 566
||||||||||| ||||||||| |||| |||||||||||||| ||||| || ||| | ||
Sbjct 612 GTTGGTTGGCCTATTGGTGGTTATCCC-GGCCCTCAGGGACCGTACTATTGCGGTATTGG 670
Query 567 AGCTGACAAAGCCATTGGTC-GTGACATTGTGGATGCACACTACAAAGCCTGTATT-TAC 624
||| |||||| | |||| | | || |||| ||| | |||||||| ||||| || |||
Sbjct 671 AGCAGACAAATCTTTTGG-CAGAGATGTTGTTGATTCTCACTACAAGGCCTG-CTTATAC 728
Query 625 GCCGGTATTGGCATTTCTGGTGTCAATGGAGAAGTCATGCCTGGCCAGTGGGAGTTCCAA 684
|| || || |||| ||| ||||||||||||||||||| || ||||||||||||||
Sbjct 729 GCTGGGATCAACATTAGTGGCATCAATGGAGAAGTCATGCCGGGTCAGTGGGAGTTCCAG 788
Query 685 GTCGGCCCTGTTGAGGGTAT-TGGTGCTGGTGATCAAGTCTGGGTTGCTCGATACCTTCT 743
||||| || | || ||||| | | |||| |||| || | ||||| ||||| ||| || |
Sbjct 789 GTCGGTCCAGCTGTTGGTATCTCG-GCTGCTGATGAAATTTGGGTCGCTCGTTACATTTT 847
Query 744 CGAGAGGATCACTGAGATCT-CTGGTGTAAAT-GTCAGC-TTCGACCCAAAACC-AGTCC 799
||||||||||| ||||| | ||||||| | | || | | || ||||| ||||| | |||
Sbjct 848 GGAGAGGATCACAGAGAT-TGCTGGTGT-AGTGGT-ATCTTTTGACCCGAAACCGATTCC 904
Query 800 CGGGTGATTGGAACGGAGCTGGAGCTCACTGCAACTACAGTACTAAGACAATGA-GGAAC 858
| ||||| |||||||| ||||| |||||||||||||||||||| ||| |||||| ||||
Sbjct 905 C-GGTGACTGGAACGGTGCTGGTGCTCACTGCAACTACAGTACCAAGTCAATGAGGGAA- 962
Query 859 GATGGAGGATTA-GAAG-TGATCAAGAAAGCGATAGGGAAGCTTCAG-CTGAAACACAAA 915
|| || || ||| | || | ||||||||||| || | || || | |||| |||||||
Sbjct 963 GAAGGCGG-TTACG-AGATCATCAAGAAAGCAATCGATAA-ATTGGGACTGAGACACAAA 1019
Query 916 GAACACATTGCTGCTTACGGTGAAGGCAACGAGCGTCGTCTCACTGGAAAGCACGAAACC 975
||||||||||||||||||||||||||||| |||||||||||||| ||| | ||||| ||
Sbjct 1020 GAACACATTGCTGCTTACGGTGAAGGCAATGAGCGTCGTCTCACAGGACACCACGAGACT 1079
Query 976 GCAGACATCAACACTTTCTCTT-GGGGAGTCGCAAACCGTGGAGCATCCGTTA-GAATTG 1033
|| ||||||||||||||| ||| |||| || || |||||||||||||| | | || | |
Sbjct 1080 GCTGACATCAACACTTTC-CTTTGGGGTGTTGCGAACCGTGGAGCATC-GATCCGAGTAG 1137
Query 1034 GACGTGACACTGAGAAAGAAGGTAAAGGTTACTTCGAGGACCGAAGGCCAGCTTCTAACA 1093
||||||| || ||||||||||| ||||| ||||| |||||| | ||||||||||| ||||
Sbjct 1138 GACGTGATACGGAGAAAGAAGGGAAAGGATACTTTGAGGACAGGAGGCCAGCTTCGAACA 1197
Query 1094 TGGATCCTTATGTTGTCACTTCCATGATCGCTGAAACCACCATCCTC 1140
|||||||||| |||||||||||||||| || || || || ||||||
Sbjct 1198 TGGATCCTTACATTGTCACTTCCATGATTGCAGAGACTACAATCCTC 1244
> AT5G16570.1 | Symbols: GLN1;4 | glutamine synthetase 1;4 | chr5:5421743-5424566
REVERSE LENGTH=1269
Length=1269
Score = 664 bits (359), Expect = 0.0
Identities = 828/1050 (79%), Gaps = 50/1050 (5%)
Strand=Plus/Plus
Query 115 CTCTCCGACGCCACCGAAAAAATCATCGCCGAATACATATGGATCGGTGGATCTGGAATG 174
|||||||| |||| || | ||||||||||| ||||||||||| |||||||| || ||
Sbjct 77 CTCTCCGATTCCACTGACCAGATCATCGCCGAGTACATATGGATTGGTGGATCGGGCTTG 136
Query 175 GACATCAGAAGCAAAGCCAGGACACTACCAGGACCAGTCACTGATCCATCAAAGCTT-CC 233
|| || ||||||||||| ||||| | || |||||||| || |||||||| || || ||
Sbjct 137 GATATGAGAAGCAAAGCAAGGACTTTGCCTGGACCAGTGACGGATCCATCGCAG-TTACC 195
Query 234 CAAATGGAACTACGACGGATCCAGCACCGGTCAGGCTGCC-GGAGAAGACAGTGAAGTCA 292
||||||||||||||||| || |||||||| || ||| || || || |||||||||||||
Sbjct 196 GAAATGGAACTACGACGGTTCAAGCACCGGCCAAGCT-CCGGGCGATGACAGTGAAGTCA 254
Query 293 TTC-TATACCCTCAGGCGATATTCAAGGATCCATTCAGGAA-AGGCAACAACATCCTGGT 350
|| | |||||||| || || ||||| || || |||| ||| ||||||||||||||| ||
Sbjct 255 -TCATCTACCCTCAAGCTATCTTCAAAGACCCCTTCA-GAAGAGGCAACAACATCCTTGT 312
Query 351 GATGTGTGATGCTTACACACCAGCTGGTGATCCAATTCCAACCAACAAGAGGCACAAC-G 409
||||||||| || || ||||| || || || || ||||| || ||||| ||||| | |
Sbjct 313 GATGTGTGACGCATATACACCGGCAGGAGAGCCGATTCCGACGAACAAAAGGCA-TGCGG 371
Query 410 CTGCTAAGATC-TT-CAGCCACCCCAACGTTGCCTCTGAGGAGCCTTGGTATGGAATTGA 467
| ||||||||| || || |||| | |||| | | || || | ||||| ||||||||
Sbjct 372 CGGCTAAGATCTTTGAAG--ACCCTAGTGTTGTCGCCGAAGAAACATGGTACGGAATTGA 429
Query 468 GCAAGAATACACTTTGATGCAAAAGGACGTGAACTGGCCAATTGGTTGGCCTGTTGGTGG 527
||||| || || ||| |||||||||| | || ||||| | |||||||| || || ||
Sbjct 430 ACAAGAGTATACCTTGTTGCAAAAGGATATTAAGTGGCCGGTAGGTTGGCCGGTCGGCGG 489
Query 528 TTTCCCTGGCCCTCAGGGACCTTACTACTGTGGTGTGGGAGCTGACAAAGCCATTGGTCG 587
|||||| || ||||||||||| ||||||||||| || ||||| ||||||||| |||| |
Sbjct 490 TTTCCCAGGTCCTCAGGGACCGTACTACTGTGGAGTTGGAGCAGACAAAGCCTTTGGAAG 549
Query 588 TGACATTGTGGATGCACACTACAAAGCCTGTATTTACGCCGGTATTGGC-ATTTC--TGG 644
||||| || ||| | || |||||||| ||| |||||||||| | | | || || |||
Sbjct 550 AGACATCGTTGATTCTCATTACAAAGCTTGTCTTTACGCCGG-AAT--CAATGTCAGTGG 606
Query 645 TGTC-AATGGAGAAGTCATGCCTGGCCAGTGGGAGTTCCAAGTCGG-CCCT--GTTGAGG 700
| | || || ||||| ||||||||||||||||||||||||||||| ||| |||| |
Sbjct 607 -GACTAACGGCGAAGTTATGCCTGGCCAGTGGGAGTTCCAAGTCGGTCCCACCGTTG-GA 664
Query 701 GTATTGGTGCTGGTGATCAAGTCTGGGTTGCTCGATACCTTCTCGAGAGGATCACTGAGA 760
|| | ||| | ||||| |||||||||||||| ||| |||| ||||||||||| || |
Sbjct 665 --ATCGCTGCCGCCGATCAGGTCTGGGTTGCTCGTTACATTCTTGAGAGGATCACAGA-A 721
Query 761 TCT--CTGGTGTAAATGT-CAG-CT-TCGACCCAAAACCAGTCCCGGGTGATTGGAACGG 815
| | |||| || ||| | | || | ||||| |||||| | ||||| |||||||| ||
Sbjct 722 T-TGGCTGGAGT---TGTTCTGTCTCTAGACCCTAAACCAATTCCGGGAGATTGGAATGG 777
Query 816 AGCTGGAGCTCACTGCAACT-ACAGTACTAAGACAATGAG-GAACGATGGAGGATTA-GA 872
|| || || ||| ||| | ||||||| ||| | ||||| ||| |||||||| | | ||
Sbjct 778 TGCAGGGGCACACA-CAAATTACAGTACGAAGTCGATGAGAGAA-GATGGAGGGT-ACGA 834
Query 873 AGTGATCAAGAAAGCGATAGGGAAGCTTCAGCT-GAAACACAAAGAACACATTGCTGCTT 931
||||| |||||||| |||| ||||||| | | | ||||| ||||||||||||||||
Sbjct 835 GGTGATAAAGAAAGCAATAGAGAAGCTTG-GATTGCGTCACAAGGAACACATTGCTGCTT 893
Query 932 ACGGTGAAGGCAACGAGCGTCGTCTCACTGGAAAGCACGAAACCGCAGACATCAACACTT 991
| |||||||||||||||||||||||||| ||||| || |||||||| || ||||||||||
Sbjct 894 ATGGTGAAGGCAACGAGCGTCGTCTCACCGGAAAACATGAAACCGCCGATATCAACACTT 953
Query 992 TCTCT-TGGGGAGTCGCAAACCGTGGAGCATCCG-TTAGAATTGGACGTGACACTGAGAA 1049
||| | ||||| || ||||||||||| ||||| | |||| |||| |||||||||||| |
Sbjct 954 TCT-TATGGGGTGTGGCAAACCGTGGGGCATC-GATTAGGGTTGGGCGTGACACTGAGCA 1011
Query 1050 AGAAGGTAAAGGTTACTTCGAGGACCGAAGGCCAGCTTCTAACATGGATCCTTATGTTGT 1109
| || ||||| ||||| || || || ||||||||||| |||||||||||||| |||
Sbjct 1012 GGCTGGAAAAGGATACTTTGAAGATCGTAGGCCAGCTTCGAACATGGATCCTTACACTGT 1071
Query 1110 CACTTCCATGATCGCTGAAACCACCATCCT 1139
|| |||||||| |||||| |||| |||||
Sbjct 1072 GACCTCCATGATTGCTGAATCCACAATCCT 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62449477980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5